#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Thu Sep 13 15:14:51 2018
Read data file format json schema to dictionary
"""
import os
import sys
import json
import logging
import shutil
from copy import deepcopy
import glob
from .. import properties
if sys.version_info[0] >= 3:
py3 = True
else:
py3 = False
toolPath = os.path.dirname(os.path.abspath(__file__))
schema_lib = os.path.join(toolPath,'lib')
templates_path = os.path.join(schema_lib,'templates','schemas')
def read_schema(schema_name = None, ext_schema_path = None):
if schema_name:
if schema_name not in properties.supported_data_models:
print('ERROR: \n\tInput data model "{}" not supported. See mdf_reader.properties.supported_data_models for supported data models'.format(schema_name))
return
else:
schema_path = os.path.join(schema_lib,schema_name)
else:
schema_path = os.path.abspath(ext_schema_path)
schema_name = os.path.basename(schema_path)
schema_file = os.path.join(schema_path, schema_name + '.json')
if not os.path.isfile(schema_file):
logging.error('Can\'t find input schema file {}'.format(schema_file))
return
with open(schema_file) as fileObj:
schema = json.load(fileObj)
# ---------------------------------------------------------------------------
# FILL IN THE INITIAL SCHEMA TO "FULL COMPLEXITY" TO HOMOGEINIZE
# EXPLICITY ADD INFO THAT IS IMPLICIT TO GIVEN SITUATIONS/SUBFORMATS
# ---------------------------------------------------------------------------
# One report per record: make sure later changes are reflected in MULTIPLE
# REPORTS PER RECORD case below if we ever use it!
# Currently only suppoerted case: one report per record (line)
# First check for no header case: sequential sections
if not schema['header']:
if not schema['sections']:
logging.error('\'sections\' block needs to be defined in a schema with no header. Error in data model schema file {}'.format(schema_file))
return
schema['header'] = dict()
if not schema['header'].get('multiple_reports_per_line'):
# Make no section formats be 1 section format
if not schema.get('sections'):
if not schema.get('elements'):
logging.error('Data elements not defined in data model schema file {} under key \'elements\' '.format(schema_file))
return
schema['sections'] = {properties.dummy_level:{'header':{},'elements':schema.get('elements')}}
schema['header']['parsing_order'] = [{'s':[properties.dummy_level]}]
schema.pop('elements',None)
schema['sections'][properties.dummy_level]['header']['delimiter'] = schema['header'].get('delimiter')
schema['header'].pop('delimiter',None)
schema['sections'][properties.dummy_level]['header']['field_layout'] = schema['header'].get('field_layout')
schema['header'].pop('field_layout',None)
# Make parsing order explicit
if not schema['header'].get('parsing_order'):# assume sequential
schema['header']['parsing_order'] = [{'s':list(schema['sections'].keys())}]
# Make disable_read and field_layout explicit: this is ruled by delimiter or length being set,
# unless explicitly set
for section in schema['sections'].keys():
if schema['sections'][section]['header'].get('disable_read'):
continue
else:
schema['sections'][section]['header']['disable_read'] = False
if not schema['sections'][section]['header'].get('field_layout'):
delimiter = schema['sections'][section]['header'].get('delimiter')
schema['sections'][section]['header']['field_layout'] = 'delimited' if delimiter else 'fixed_width'
return schema
else:
logging.error('Multile reports per line data model: not yet supported')
return
# 1X: MULTIPLE REPORTS PER RECORD
# !!!! NEED TO ADD SECTION LENS TO THE REPORT'S SECTION'S HEADER!!!
# CAN INFER FROM ELEMENTS LENGHT AND ADD, OR MAKE AS REQUIREMENT TO BE GIVEN
# global name_report_section
# Have to assess how the section splitting works when x sequential
# sections are declared, and only x-y are met.
#if not schema['header'].get('reports_per_line'):
# schema['header']['reports_per_line'] = 24
#if not schema.get('sections'):
# schema['sections'] = dict()
# schema['header']['parsing_order'] = [{'s':[]}]
# for i in range(1,schema['header']['reports_per_line'] + 1):
# schema['sections'].update({str(i):{'header':{},'elements':deepcopy(schema.get('elements'))}})
#else:
# name_report_section = list(schema['sections'].keys())[-1]
# schema['header']['name_report_section'] == name_report_section
# schema['header']['parsing_order'] = [{'s':list(schema['sections'].keys())[:-1]}]
# for i in range(1,schema['header']['reports_per_line'] + 1):
# schema['sections'].update({str(i):schema['sections'].get(name_report_section)})
# schema['sections'].pop(name_report_section,None)
#for i in range(1,schema['header']['reports_per_line'] + 1):
# schema['header']['parsing_order'][0]['s'].append(str(i))
#return schema
def df_schema(df_columns, schema):
def clean_schema(columns,schema):
# Could optionally add cleaning of element descriptors that only apply
# to the initial reading of the data model: field_length, etc....
for element in list(schema):
if element not in columns:
schema.pop(element)
return
flat_schema = dict()
# Flatten main model schema
for section in schema.get('sections'):
if section == properties.dummy_level:
flat_schema.update(schema['sections'].get(section).get('elements'))
elif schema['sections'].get(section).get('header').get('disable_read'):
flat_schema.update( { (section, section): {'column_type':'object'} })
else:
flat_schema.update( { (section, x): schema['sections'].get(section).get('elements').get(x) for x in schema['sections'].get(section).get('elements') })
clean_schema(df_columns, flat_schema)
return flat_schema
def templates():
schemas = glob.glob(os.path.join(templates_path,'*.json'))
return [ os.path.basename(x).split(".")[0] for x in schemas ]
def copy_template(schema, out_dir = None,out_path = None):
schemas = templates()
if schema in schemas:
schema_path = os.path.join(templates_path,schema + '.json')
schema_out = out_path if out_path else os.path.join(out_dir,schema + '.json')
shutil.copyfile(schema_path, schema_out)
if os.path.isfile( schema_out):
print('Schema template {0} copied to {1}'.format(schema, schema_out))
return
else:
print('copy_template ERROR:')
print('\tError copying schema template {0} copied to {1}'.format(schema, schema_out))
return
else:
print('copy_template ERROR:')
print('\tRequested template {} must be a valid name.'.format(schema))
print('\tValid names are: {}'.format(", ".join(schemas)))
return