#!/usr/bin/env python3 # -*- coding: utf-8 -*- """ Created on Fri Jan 10 13:17:43 2020 FUNCTION TO PREPARE SOURCE DATA TO WHAT GET_SECTIONS() EXPECTS, AN ITERABLE: EITHER A PD.IO.PARSERS.TEXTFILEREADER OR A LIST, DEPENDING ON SOURCE TYPE AND CHUNKSIZE ARGUMENT BASICALLY 1 RECORD (ONE OR MULTIPLE REPORTS) IN ONE LINE delimiter="\t" option in pandas.read_fwf avoids white spaces at taild to be stripped @author: iregon OPTIONS IN OLD DEVELOPMENT: 1. DLMT: delimiter = ',' default names = [ (x,y) for x in schema['sections'].keys() for y in schema['sections'][x]['elements'].keys()] missing = { x:schema['sections'][x[0]]['elements'][x[1]].get('missing_value') for x in names } TextParser = pd.read_csv(source,header = None, delimiter = delimiter, encoding = 'utf-8', dtype = 'object', skip_blank_lines = False, chunksize = chunksize, skiprows = skiprows, names = names, na_values = missing) 2. FWF:# delimiter = '\t' so that it reads blanks as blanks, otherwise reads as empty: NaN this applies mainly when reading elements from sections, but we leave it also here TextParser = pd.read_fwf(source,widths=[FULL_WIDTH],header = None, skiprows = skiprows, delimiter="\t", chunksize = chunksize) """ import pandas as pd import os from mdf_reader import properties def import_data(source,chunksize = None, skiprows = None): if isinstance(source,pd.io.parsers.TextFileReader): TextParser = source elif os.path.isfile(source): TextParser = pd.read_fwf(source,widths=[properties.MAX_FULL_REPORT_WIDTH],header = None, delimiter="\t", skiprows = skiprows, chunksize = chunksize) if not chunksize: TextParser = [TextParser] else: print('Error') return TextParser