diff --git a/.codespellrc b/.codespellrc
new file mode 100644
index 0000000000000000000000000000000000000000..02b92638db4213162d0bc2be4000f065f16cedaf
--- /dev/null
+++ b/.codespellrc
@@ -0,0 +1,6 @@
+[codespell]
+# Ignore long base64 - e.g. images in notebooks
+ignore-regex = [A-Za-z0-9+/]{100,}
+skip = "./docs/_build"
+count = true
+quiet-level = 3
diff --git a/.gitignore b/.gitignore
index 3077e087194aa3c3e197178455eb69055b0c61fb..bb7502570abbba1cd1d26fb5c42bba4c0ff287df 100644
--- a/.gitignore
+++ b/.gitignore
@@ -25,7 +25,7 @@ share/python-wheels/
.installed.cfg
*.egg
MANIFEST
-uv.lock
+.DS_Store
# PyInstaller
# Usually these files are written by a python script from a template
@@ -73,6 +73,7 @@ instance/
docs/_build/
docs/_static/
docs/_templates/
+docs/*.tex
# PyBuilder
.pybuilder/
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
new file mode 100644
index 0000000000000000000000000000000000000000..afbbcf9d3a9b4a1a97bc03930a326f9b0f63e4ea
--- /dev/null
+++ b/.gitlab-ci.yml
@@ -0,0 +1,52 @@
+variables:
+ UV_VERSION: "0.5"
+ PYTHON_VERSION: "3.12"
+ BASE_LAYER: "bookworm-slim"
+ UV_CACHE_DIR: ".uv-cache"
+ UV_SYSTEM_PYTHON: "1"
+stages:
+ - build
+ - test
+ - lint
+pre-commit:
+ stage: build
+ image: python:3.11
+ script:
+ - pip install pre-commit
+ - pre-commit run --all-files
+ rules:
+ - if: $CI_PIPELINE_SOURCE == "merge_request_event"
+ - if: $CI_COMMIT_BRANCH == "main"
+pytest:
+ stage: test
+ image: ghcr.io/astral-sh/uv:$UV_VERSION-python$PYTHON_VERSION-$BASE_LAYER
+ cache:
+ - key:
+ files:
+ - uv.lock
+ paths:
+ - $UV_CACHE_DIR
+ script:
+ - uv --version
+ - uv sync --all-extras
+ - uv pip list
+ - uv run pytest test
+ rules:
+ - if: $CI_PIPELINE_SOURCE == "merge_request_event"
+ - if: $CI_COMMIT_BRANCH == "main"
+ruff:
+ stage: lint
+ interruptible: true
+ image:
+ name: ghcr.io/astral-sh/ruff:0.9.9-alpine
+ before_script:
+ - cd $CI_PROJECT_DIR
+ - ruff --version
+ script:
+ - ruff check --output-format=gitlab > code-quality-report.json
+ artifacts:
+ reports:
+ codequality: $CI_PROJECT_DIR/code-quality-report.json
+ rules:
+ - if: $CI_PIPELINE_SOURCE == "merge_request_event"
+ - if: $CI_COMMIT_BRANCH == "main"
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
new file mode 100644
index 0000000000000000000000000000000000000000..c4583712342b5675d51005627bc6578ec04ab5a0
--- /dev/null
+++ b/.pre-commit-config.yaml
@@ -0,0 +1,16 @@
+repos:
+ - repo: https://github.com/pre-commit/pre-commit-hooks
+ rev: v5.0.0
+ hooks:
+ - id: end-of-file-fixer
+ - id: trailing-whitespace
+ - repo: https://github.com/astral-sh/ruff-pre-commit
+ rev: v0.8.5
+ hooks:
+ - id: ruff
+ args: [--fix]
+ - id: ruff-format
+ - repo: https://github.com/codespell-project/codespell
+ rev: v2.3.0
+ hooks:
+ - id: codespell
diff --git a/CHANGES.md b/CHANGES.md
index 4daa04ac7456351357e7a685f001e14de44f8b8d..c2df14a14b5d2079cd73363aa8de35961dd661ef 100644
--- a/CHANGES.md
+++ b/CHANGES.md
@@ -6,6 +6,7 @@ Contributors to this version: Joseph Siddons (@josidd)
### Internal changes
+* Added CI/CD scripts for GitLab (!25).
* Added changelog (!26).
## 0.11.2 (2025-02-27)
diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
index 7e585bdab176685ad0953532d89b61b64bec67b2..6bebe150351297e5f7d21bf9b5599fc00616948a 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -15,3 +15,102 @@ Please write tests for your code, add these to the `test` directory. I use `pyte
## Issues
Please file issues as they arise. Describe the problem, the steps to reproduce, and provide any output.
+
+# Contributing to `GeoSpatialTools`
+
+To contribute to this package you will need to be a member of NOC GitLab & have access permissions
+to this repository - if you're able to read this then you have access!
+
+If you wish to contribute please make sure you are working on your own branches (not main), ideally
+you should work on your own fork. If you wish to work on a particular module you could name your
+branch `module-user` where `module` would be replaced by the name of the module you are working on,
+and `user` would be your user name. However you can name your branch as you see fit, but it is a
+good idea to name it something that relates to what you are working on. If you are working on an
+issue please reference the issue number in the branch name and associated Merge request. It is
+generally easier to make a merge request and create a branch from the issue.
+
+If you wish to merge to `main` please create a merge request and assign it to `josidd`,
+and/or `ricorne` - either to perform the merge and/or review/approve the request. Please provide a
+summary of the main changes that you have made so that there is context for us to review the
+changes.
+
+## Changelog
+
+The changelog is `CHANGES.md`. Please add your changes to the changelog in your merge request.
+
+## Commit Messages
+
+We are trying to use a consistent and informative approach for writing commit messages in this
+repository. We have adopted the [conventional commits](https://www.conventionalcommits.org/en/v1.0.0/)
+standard for commit messages. Whilst we won't enforce this standard upon others, we do recommend the
+approach. Otherwise please ensure that your messages are descriptive and not just `changes` or
+similar.
+
+## Development Instructions
+
+We recommend [uv](https://docs.astral.sh/uv/) for development purposes.
+
+Clone the repository and create your development branch
+
+```bash
+git clone git@git.noc.ac.uk:noc_surface_processes/geospatialtools.git /path/to/geospatialtools
+cd /path/to/geospatialtools
+git checkout -b new-branch-name # if not a new branch exclude the '-b'
+```
+
+Create a virtual environment and install the dependencies
+
+```bash
+uv venv --python 3.12 # recommended version >= 3.9 is supported
+source .venv/bin/activate # assuming bash or zsh
+```
+
+To install the dependencies run:
+
+```bash
+uv sync
+```
+
+Or to install all development dependencies and dependencies run:
+
+```bash
+uv sync --extra all --dev
+```
+
+## Standards
+
+We recommend the use of [ruff](https://docs.astral.sh/ruff/) as a linter/formatter. The
+`pyproject.toml` file includes all the settings for `ruff` for `GeoSpatialTools`.
+
+```bash
+uvx ruff check
+uvx ruff check --fix
+uvx ruff format
+```
+
+[codespell](https://github.com/codespell-project/codespell) is also used to check spelling/bad
+names.
+
+We use [pre-commit](https://pre-commit.com/) as part of out CI/CD processing.
+
+## Tests
+
+If you create new functionality please write and perform unit-tests on your code. The current
+implementation of `GeoSpatialTools` uses the `pytest` library.
+
+New tests do not need to be comprehensive, but I likely won't merge if your changes fails testing,
+especially the pre-existing tests. You will need to include (and reference) any data that is
+needed for testing.
+
+We have a CI/CD pipeline that will automatically implement testing as part of merge requests.
+
+We welcome additions/improvements to the current tests. New python test files should be placed in
+the `test` directory and filenames must be prefixed with `test_`.
+
+To perform tests you will need to have the environment set-up and active. Then run:
+
+```
+uv run pytest test/test_*.py
+```
+
+from the main/top directory for the repository.
diff --git a/GeoSpatialTools/great_circle.py b/GeoSpatialTools/great_circle.py
index b6a2882f10285b2618449b73c0d8412a674144c3..59cf3eb09aaebd67627561f42846417f7c69b244 100644
--- a/GeoSpatialTools/great_circle.py
+++ b/GeoSpatialTools/great_circle.py
@@ -6,6 +6,7 @@ comparisons between GreatCircle objects.
"""
import numpy as np
+from typing import Optional, Tuple
from .distance_metrics import bearing, gcd_slc
@@ -15,7 +16,7 @@ def cartesian_to_lonlat(
y: float,
z: float,
to_radians: bool = False,
-) -> tuple[float, float]:
+) -> Tuple[float, float]:
"""
Get lon, and lat from cartesian coordinates.
@@ -54,7 +55,7 @@ def polar_to_cartesian(
R: float = 6371,
to_radians: bool = True,
normalised: bool = True,
-) -> tuple[float, float, float]:
+) -> Tuple[float, float, float]:
"""
Convert from polars coordinates to cartesian.
@@ -196,7 +197,7 @@ class GreatCircle:
def intersection(
self, other: object, epsilon: float = 0.01
- ) -> tuple[float, float] | None:
+ ) -> Optional[Tuple[float, float]]:
"""
Determine intersection position with another GreatCircle.
@@ -241,7 +242,7 @@ class GreatCircle:
self,
other: object,
epsilon: float = 0.01,
- ) -> float | None:
+ ) -> Optional[float]:
"""
Get angle of intersection with another GreatCircle.
diff --git a/GeoSpatialTools/kdtree.py b/GeoSpatialTools/kdtree.py
index 7151bc680a818601d53cf09018f3a1a7dc37db0e..96ad2419cd896df2ab5b2cc7e0f91da03f8f113e 100644
--- a/GeoSpatialTools/kdtree.py
+++ b/GeoSpatialTools/kdtree.py
@@ -20,7 +20,7 @@ class KDTree:
This implementation is a _balanced_ KDTree, each leaf node should have the
same number of points (or differ by 1 depending on the number of points
- the KDTree is intialised with).
+ the KDTree is initialised with).
The KDTree partitions in each of the lon and lat dimensions alternatively
in sequence by splitting at the median of the dimension of the points
@@ -34,7 +34,7 @@ class KDTree:
The current depth of the KDTree, you should set this to 0, it is used
internally.
max_depth : int
- The maximium depth of the KDTree. The leaf nodes will have depth no
+ The maximum depth of the KDTree. The leaf nodes will have depth no
larger than this value. Leaf nodes will not be created if there is
only 1 point in the branch.
"""
diff --git a/GeoSpatialTools/octtree.py b/GeoSpatialTools/octtree.py
index ea48d4d33f9b45324a9e733de55bf2c55592e3c7..2c81b7631ea921ce6cada89b22e240516044fe12 100644
--- a/GeoSpatialTools/octtree.py
+++ b/GeoSpatialTools/octtree.py
@@ -1,7 +1,7 @@
"""
OctTree
-------
-Constuctors for OctTree classes that can decrease the number of comparisons
+Constructors for OctTree classes that can decrease the number of comparisons
for detecting nearby records for example. This is an implementation that uses
Haversine distances for comparisons between records for identification of
neighbours.
@@ -18,14 +18,14 @@ from warnings import warn
class SpaceTimeRecord:
"""
- ICOADS Record class.
+ SpaceTimeRecord class.
- This is a simple instance of an ICOARDS record, it requires position and
- temporal data. It can optionally include a UID and extra data.
+ This is a simple instance of a record, it requires position and temporal
+ data. It can optionally include a UID and extra data.
The temporal component was designed to use `datetime` values, however all
methods will work with numeric datetime information - for example a pentad,
- timestamp, julian day, etc. Note that any uses within an OctTree and
+ time-stamp, Julian day, etc. Note that any uses within an OctTree and
SpaceTimeRectangle must also have timedelta values replaced with numeric
ranges in this case.
diff --git a/GeoSpatialTools/quadtree.py b/GeoSpatialTools/quadtree.py
index 1ef4e310a52bc75c7f8c3f7eacddfd5d595959eb..3484febd0e34c34339f4aad778e45b9caaf71778 100644
--- a/GeoSpatialTools/quadtree.py
+++ b/GeoSpatialTools/quadtree.py
@@ -1,7 +1,7 @@
"""
QuadTree
--------
-Constuctors for QuadTree classes that can decrease the number of comparisons
+Constructors for QuadTree classes that can decrease the number of comparisons
for detecting nearby records for example. This is an implementation that uses
Haversine distances for comparisons between records for identification of
neighbours.
@@ -17,9 +17,9 @@ from math import degrees, sqrt
class Record:
"""
- ICOADS Record class
+ Record class
- This is a simple instance of an ICOARDS record, it requires position data.
+ This is a simple instance of a record, it requires position data.
It can optionally include datetime, a UID, and extra data passed as
keyword arguments.
diff --git a/GeoSpatialTools/utils.py b/GeoSpatialTools/utils.py
index 4f83cfec9ed670559d33949c699f58d2516c107c..c524f1fa707fd75ca2684e8020da20aa33ea9bed 100644
--- a/GeoSpatialTools/utils.py
+++ b/GeoSpatialTools/utils.py
@@ -8,6 +8,6 @@ class LatitudeError(ValueError):
class DateWarning(Warning):
- """Warnning for Datetime Value"""
+ """Warning for Datetime Value"""
pass
diff --git a/LICENSE b/LICENSE
index 8050a3b40d9b455457f22ee85f721e6109e4443f..4ea99c213c5c0c005ae4e80df8e52169d06896ec 100644
--- a/LICENSE
+++ b/LICENSE
@@ -393,5 +393,3 @@ the avoidance of doubt, this paragraph does not form part of the
public licenses.
Creative Commons may be contacted at creativecommons.org.
-
-
diff --git a/README.md b/README.md
index 20d6a9c940c27c508b851d4891db322c25235925..cd3000372de6f0cf68e2228f4ec4fc5b212e1b04 100644
--- a/README.md
+++ b/README.md
@@ -81,11 +81,11 @@ N_samples = 1000
records: list[Record] = [Record(choice(lon_range), choice(lat_range)) for _ in range(N_samples)]
# Construct Tree
-kt = KDTree(records)
+kdtree = KDTree(records)
test_value: Record = Record(lon=47.6, lat=-31.1)
neighbours: list[Record] = []
-neighbours, dist = kt.query(test_value)
+neighbours, dist = kdtree.query(test_value)
```
### Points within distance (2d \& 3d)
@@ -126,16 +126,16 @@ N_samples = 1000
# Construct Tree
boundary = Rectangle(-180, 180, -90, 90) # Full domain
-qt = QuadTree(boundary)
+quadtree = QuadTree(boundary)
records: list[Record] = [Record(choice(lon_range), choice(lat_range)) for _ in range(N_samples)]
for record in records:
- qt.insert(record)
+ quadtree.insert(record)
test_value: Record = Record(lon=47.6, lat=-31.1)
dist: float = 340 # km
-neighbours: list[Record] = qt.nearby_points(test_value, dist)
+neighbours: list[Record] = quadtree.nearby_points(test_value, dist)
```
#### OctTree - 3d QuadTree
@@ -190,16 +190,16 @@ N_samples = 1000
# Construct Tree
boundary = SpaceTimeRectangle(-180, 180, -90, 90, datetime(2009, 1, 1, 0), datetime(2009, 1, 2, 23)) # Full domain
-ot = OctTree(boundary)
+octtree = OctTree(boundary)
records: list[SpaceTimeRecord] = [
SpaceTimeRecord(choice(lon_range), choice(lat_range), choice(dates)) for _ in range(N_samples)]
for record in records:
- ot.insert(record)
+ octtree.insert(record)
test_value: SpaceTimeRecord = SpaceTimeRecord(lon=47.6, lat=-31.1, datetime=datetime(2009, 1, 23, 17, 41))
dist: float = 340 # km
t_dist = timedelta(hours=4)
-neighbours: list[Record] = ot.nearby_points(test_value, dist, t_dist)
+neighbours: list[Record] = octtree.nearby_points(test_value, dist, t_dist)
```
diff --git a/docs/Documentation.pdf b/docs/Documentation.pdf
index 9ed18c58ea3d86c693a459472a60918d3c388e7c..95fa6fe6a43615bc261d68dd7d888b19d452c34e 100644
Binary files a/docs/Documentation.pdf and b/docs/Documentation.pdf differ
diff --git a/docs/Documentation.tex b/docs/Documentation.tex
deleted file mode 100644
index 828aec669d3367b411f1c53f0d87f26c10641c8f..0000000000000000000000000000000000000000
--- a/docs/Documentation.tex
+++ /dev/null
@@ -1,2120 +0,0 @@
-%% Generated by Sphinx.
-\def\sphinxdocclass{report}
-\documentclass[letterpaper,10pt,english]{sphinxmanual}
-\ifdefined\pdfpxdimen
- \let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen
-\fi \sphinxpxdimen=.75bp\relax
-\ifdefined\pdfimageresolution
- \pdfimageresolution= \numexpr \dimexpr1in\relax/\sphinxpxdimen\relax
-\fi
-%% let collapsible pdf bookmarks panel have high depth per default
-\PassOptionsToPackage{bookmarksdepth=5}{hyperref}
-
-\PassOptionsToPackage{booktabs}{sphinx}
-\PassOptionsToPackage{colorrows}{sphinx}
-
-\PassOptionsToPackage{warn}{textcomp}
-\usepackage[utf8]{inputenc}
-\ifdefined\DeclareUnicodeCharacter
-% support both utf8 and utf8x syntaxes
- \ifdefined\DeclareUnicodeCharacterAsOptional
- \def\sphinxDUC#1{\DeclareUnicodeCharacter{"#1}}
- \else
- \let\sphinxDUC\DeclareUnicodeCharacter
- \fi
- \sphinxDUC{00A0}{\nobreakspace}
- \sphinxDUC{2500}{\sphinxunichar{2500}}
- \sphinxDUC{2502}{\sphinxunichar{2502}}
- \sphinxDUC{2514}{\sphinxunichar{2514}}
- \sphinxDUC{251C}{\sphinxunichar{251C}}
- \sphinxDUC{2572}{\textbackslash}
-\fi
-\usepackage{cmap}
-\usepackage[T1]{fontenc}
-\usepackage{amsmath,amssymb,amstext}
-\usepackage{babel}
-
-
-
-\usepackage{tgtermes}
-\usepackage{tgheros}
-\renewcommand{\ttdefault}{txtt}
-
-
-
-\usepackage[Bjarne]{fncychap}
-\usepackage[,numfigreset=2,mathnumfig,mathnumsep={.}]{sphinx}
-
-\fvset{fontsize=auto}
-\usepackage{geometry}
-
-
-% Include hyperref last.
-\usepackage{hyperref}
-% Fix anchor placement for figures with captions.
-\usepackage{hypcap}% it must be loaded after hyperref.
-% Set up styles of URL: it should be placed after hyperref.
-\urlstyle{same}
-
-\addto\captionsenglish{\renewcommand{\contentsname}{Contents:}}
-
-\usepackage{sphinxmessages}
-\setcounter{tocdepth}{3}
-\setcounter{secnumdepth}{3}
-
-
-\title{GeoSpatialTools}
-\date{Feb 27, 2025}
-\release{0.11.2}
-\author{NOC Surface Processes}
-\newcommand{\sphinxlogo}{\vbox{}}
-\renewcommand{\releasename}{Release}
-\makeindex
-\begin{document}
-
-\ifdefined\shorthandoff
- \ifnum\catcode`\=\string=\active\shorthandoff{=}\fi
- \ifnum\catcode`\"=\active\shorthandoff{"}\fi
-\fi
-
-\pagestyle{empty}
-\sphinxmaketitle
-\pagestyle{plain}
-\sphinxtableofcontents
-\pagestyle{normal}
-\phantomsection\label{\detokenize{index::doc}}
-
-
-\sphinxstepscope
-
-
-\chapter{Introduction}
-\label{\detokenize{introduction:introduction}}\label{\detokenize{introduction::doc}}
-\sphinxAtStartPar
-Python library containing useful functions and classes for Spatial Analysis.
-
-\sphinxAtStartPar
-Tested on Python versions 3.9 to 3.13.
-
-\sphinxstepscope
-
-
-\chapter{Getting Started}
-\label{\detokenize{getting_started:getting-started}}\label{\detokenize{getting_started::doc}}
-
-\section{Installation}
-\label{\detokenize{getting_started:installation}}
-
-\subsection{Via Pip}
-\label{\detokenize{getting_started:via-pip}}
-\sphinxAtStartPar
-GeoSpatialTools is not available on PyPI, however it can be installed via pip with the following command:
-
-\begin{sphinxVerbatim}[commandchars=\\\{\}]
-\PYG{g+go}{pip install git+ssh://git@git.noc.ac.uk/nocsurfaceprocesses/geospatialtools.git}
-\end{sphinxVerbatim}
-
-
-\subsection{From Source}
-\label{\detokenize{getting_started:from-source}}
-\sphinxAtStartPar
-Alternatively, you can clone the repository and install using pip (or conda if preferred).
-
-\begin{sphinxVerbatim}[commandchars=\\\{\}]
-\PYG{g+go}{git clone git@git.noc.ac.uk/nocsurfaceprocesses/geospatialtools.git}
-\PYG{g+go}{cd geospatialtools}
-\PYG{g+go}{python \PYGZhy{}m venv venv}
-\PYG{g+go}{source venv/bin/activate}
-\PYG{g+go}{pip install \PYGZhy{}e .}
-\end{sphinxVerbatim}
-
-\sphinxstepscope
-
-
-\chapter{Credits}
-\label{\detokenize{authors:credits}}\label{\detokenize{authors::doc}}
-
-\section{Development Lead}
-\label{\detokenize{authors:development-lead}}\begin{itemize}
-\item {}
-\sphinxAtStartPar
-Joseph T. Siddons \textless{}\sphinxhref{mailto:josidd@noc.ac.uk}{josidd@noc.ac.uk}\textgreater{} \sphinxhref{git.noc.ac.uk/josidd}{@josidd}
-
-\end{itemize}
-
-
-\section{Contributoring Developers}
-\label{\detokenize{authors:contributoring-developers}}\begin{itemize}
-\item {}
-\sphinxAtStartPar
-Richard C. Cornes \textless{}\sphinxhref{mailto:rcornes@noc.ac.uk}{rcornes@noc.ac.uk}\textgreater{} \sphinxhref{git.noc.ac.uk/ricorne}{@ricorne}
-
-\end{itemize}
-
-\sphinxstepscope
-
-
-\chapter{Users Guide}
-\label{\detokenize{users_guide:module-GeoSpatialTools.neighbours}}\label{\detokenize{users_guide:users-guide}}\label{\detokenize{users_guide::doc}}\index{module@\spxentry{module}!GeoSpatialTools.neighbours@\spxentry{GeoSpatialTools.neighbours}}\index{GeoSpatialTools.neighbours@\spxentry{GeoSpatialTools.neighbours}!module@\spxentry{module}}
-
-\section{Neighbours}
-\label{\detokenize{users_guide:neighbours}}
-\sphinxAtStartPar
-Functions for finding nearest neighbours using bisection.
-\index{SortedError@\spxentry{SortedError}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.neighbours.SortedError}}
-\pysigstartsignatures
-\pysigline
-{\sphinxbfcode{\sphinxupquote{\DUrole{k}{exception}\DUrole{w}{ }}}\sphinxcode{\sphinxupquote{GeoSpatialTools.neighbours.}}\sphinxbfcode{\sphinxupquote{SortedError}}}
-\pysigstopsignatures
-\sphinxAtStartPar
-Error class for Sortedness
-
-\end{fulllineitems}
-
-\index{SortedWarning@\spxentry{SortedWarning}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.neighbours.SortedWarning}}
-\pysigstartsignatures
-\pysigline
-{\sphinxbfcode{\sphinxupquote{\DUrole{k}{exception}\DUrole{w}{ }}}\sphinxcode{\sphinxupquote{GeoSpatialTools.neighbours.}}\sphinxbfcode{\sphinxupquote{SortedWarning}}}
-\pysigstopsignatures
-\sphinxAtStartPar
-Warning class for Sortedness
-
-\end{fulllineitems}
-
-\index{find\_nearest() (in module GeoSpatialTools.neighbours)@\spxentry{find\_nearest()}\spxextra{in module GeoSpatialTools.neighbours}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.neighbours.find_nearest}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxcode{\sphinxupquote{GeoSpatialTools.neighbours.}}\sphinxbfcode{\sphinxupquote{find\_nearest}}}
-{\sphinxparam{\DUrole{n}{vals}}\sphinxparamcomma \sphinxparam{\DUrole{n}{test}}\sphinxparamcomma \sphinxparam{\DUrole{n}{check\_sorted}\DUrole{o}{=}\DUrole{default_value}{True}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Find the nearest value in a list of values for each test value.
-
-\sphinxAtStartPar
-Uses bisection for speediness!
-\begin{quote}\begin{description}
-\sphinxlineitem{Parameters}\begin{itemize}
-\item {}
-\sphinxAtStartPar
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-\item {}
-\sphinxAtStartPar
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-
-\end{itemize}
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-\sphinxlineitem{Return type}
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-\DUrole{sphinx_autodoc_typehints-type}{\sphinxcode{\sphinxupquote{Union}}{[}\sphinxcode{\sphinxupquote{List}}{[}\sphinxcode{\sphinxupquote{int}}{]}, \sphinxcode{\sphinxupquote{int}}{]}}
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-\sphinxlineitem{Returns}
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-\item {}
-\sphinxAtStartPar
-\sphinxstyleemphasis{A list containing the index of the nearest neighbour in vals for each value}
-
-\item {}
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-
-\end{itemize}
-
-
-\end{description}\end{quote}
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-\end{fulllineitems}
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-\index{module@\spxentry{module}!GeoSpatialTools.quadtree@\spxentry{GeoSpatialTools.quadtree}}\index{GeoSpatialTools.quadtree@\spxentry{GeoSpatialTools.quadtree}!module@\spxentry{module}}
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-\section{QuadTree}
-\label{\detokenize{users_guide:quadtree}}\label{\detokenize{users_guide:module-GeoSpatialTools.quadtree}}
-\sphinxAtStartPar
-Constuctors for QuadTree classes that can decrease the number of comparisons
-for detecting nearby records for example. This is an implementation that uses
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-\index{Ellipse (class in GeoSpatialTools.quadtree)@\spxentry{Ellipse}\spxextra{class in GeoSpatialTools.quadtree}}
-
-\begin{fulllineitems}
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-{\sphinxbfcode{\sphinxupquote{\DUrole{k}{class}\DUrole{w}{ }}}\sphinxcode{\sphinxupquote{GeoSpatialTools.quadtree.}}\sphinxbfcode{\sphinxupquote{Ellipse}}}
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-\pysigstopsignatures
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-A simple Ellipse Class for an ellipse on the surface of a sphere.
-\begin{quote}\begin{description}
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-\item {}
-\sphinxAtStartPar
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-
-\item {}
-\sphinxAtStartPar
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-\item {}
-\sphinxAtStartPar
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-\item {}
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-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{theta}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Angle of the semi\sphinxhyphen{}major axis from horizontal anti\sphinxhyphen{}clockwise in radians
-
-\end{itemize}
-
-\end{description}\end{quote}
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-\begin{quote}\begin{description}
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-\end{fulllineitems}
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-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.quadtree.Ellipse.nearby_rect}}
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-\begin{quote}\begin{description}
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-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-
-\end{fulllineitems}
-
-\index{QuadTree (class in GeoSpatialTools.quadtree)@\spxentry{QuadTree}\spxextra{class in GeoSpatialTools.quadtree}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.quadtree.QuadTree}}
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-{\sphinxbfcode{\sphinxupquote{\DUrole{k}{class}\DUrole{w}{ }}}\sphinxcode{\sphinxupquote{GeoSpatialTools.quadtree.}}\sphinxbfcode{\sphinxupquote{QuadTree}}}
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-A Simple QuadTree class for PyCOADS
-\begin{quote}\begin{description}
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-\item {}
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-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{capacity}} (\sphinxstyleliteralemphasis{\sphinxupquote{int}}) \textendash{} The capacity of each cell, if max\_depth is set then a cell at the
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-
-\item {}
-\sphinxAtStartPar
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-\item {}
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-capacity for cells at the maximum depth.
-
-\end{itemize}
-
-\end{description}\end{quote}
-\index{divide() (GeoSpatialTools.quadtree.QuadTree method)@\spxentry{divide()}\spxextra{GeoSpatialTools.quadtree.QuadTree method}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.quadtree.QuadTree.divide}}
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-
-\end{fulllineitems}
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-\index{insert() (GeoSpatialTools.quadtree.QuadTree method)@\spxentry{insert()}\spxextra{GeoSpatialTools.quadtree.QuadTree method}}
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-\begin{fulllineitems}
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-Insert a point into the QuadTree
-\begin{quote}\begin{description}
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-\end{description}\end{quote}
-
-\end{fulllineitems}
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-\index{len() (GeoSpatialTools.quadtree.QuadTree method)@\spxentry{len()}\spxextra{GeoSpatialTools.quadtree.QuadTree method}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.quadtree.QuadTree.len}}
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-{\sphinxparam{\DUrole{n}{\_current\_len}\DUrole{o}{=}\DUrole{default_value}{0}}}
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-Get the number of points in the OctTree
-\begin{quote}\begin{description}
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
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-
-\end{fulllineitems}
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-\index{nearby\_points() (GeoSpatialTools.quadtree.QuadTree method)@\spxentry{nearby\_points()}\spxextra{GeoSpatialTools.quadtree.QuadTree method}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.quadtree.QuadTree.nearby_points}}
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-{\sphinxparam{\DUrole{n}{point}}\sphinxparamcomma \sphinxparam{\DUrole{n}{dist}}\sphinxparamcomma \sphinxparam{\DUrole{n}{points}\DUrole{o}{=}\DUrole{default_value}{None}}}
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-\pysigstopsignatures
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-Get all points that are nearby another point
-\begin{quote}\begin{description}
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-\sphinxAtStartPar
-\DUrole{sphinx_autodoc_typehints-type}{\sphinxcode{\sphinxupquote{List}}{[}{\hyperref[\detokenize{users_guide:GeoSpatialTools.quadtree.Record}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{Record}}}}}{]}}
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-\end{description}\end{quote}
-
-\end{fulllineitems}
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-\index{query() (GeoSpatialTools.quadtree.QuadTree method)@\spxentry{query()}\spxextra{GeoSpatialTools.quadtree.QuadTree method}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.quadtree.QuadTree.query}}
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-{\sphinxparam{\DUrole{n}{rect}}\sphinxparamcomma \sphinxparam{\DUrole{n}{points}\DUrole{o}{=}\DUrole{default_value}{None}}}
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-\pysigstopsignatures
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-Get points that fall in a rectangle
-\begin{quote}\begin{description}
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-\DUrole{sphinx_autodoc_typehints-type}{\sphinxcode{\sphinxupquote{List}}{[}{\hyperref[\detokenize{users_guide:GeoSpatialTools.quadtree.Record}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{Record}}}}}{]}}
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-\end{description}\end{quote}
-
-\end{fulllineitems}
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-\index{query\_ellipse() (GeoSpatialTools.quadtree.QuadTree method)@\spxentry{query\_ellipse()}\spxextra{GeoSpatialTools.quadtree.QuadTree method}}
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-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.quadtree.QuadTree.query_ellipse}}
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-{\sphinxparam{\DUrole{n}{ellipse}}\sphinxparamcomma \sphinxparam{\DUrole{n}{points}\DUrole{o}{=}\DUrole{default_value}{None}}}
-{}
-\pysigstopsignatures
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-Get points that fall in an ellipse.
-\begin{quote}\begin{description}
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-\DUrole{sphinx_autodoc_typehints-type}{\sphinxcode{\sphinxupquote{List}}{[}{\hyperref[\detokenize{users_guide:GeoSpatialTools.quadtree.Record}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{Record}}}}}{]}}
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-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-\index{remove() (GeoSpatialTools.quadtree.QuadTree method)@\spxentry{remove()}\spxextra{GeoSpatialTools.quadtree.QuadTree method}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.quadtree.QuadTree.remove}}
-\pysigstartsignatures
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-{\sphinxbfcode{\sphinxupquote{remove}}}
-{\sphinxparam{\DUrole{n}{point}}}
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-\pysigstopsignatures
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-Remove a Record from the QuadTree if it is in the QuadTree.
-
-\sphinxAtStartPar
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-\begin{quote}\begin{description}
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-\DUrole{sphinx_autodoc_typehints-type}{\sphinxcode{\sphinxupquote{bool}}}
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-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-
-\end{fulllineitems}
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-\index{Record (class in GeoSpatialTools.quadtree)@\spxentry{Record}\spxextra{class in GeoSpatialTools.quadtree}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.quadtree.Record}}
-\pysigstartsignatures
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-{\sphinxbfcode{\sphinxupquote{\DUrole{k}{class}\DUrole{w}{ }}}\sphinxcode{\sphinxupquote{GeoSpatialTools.quadtree.}}\sphinxbfcode{\sphinxupquote{Record}}}
-{\sphinxparam{\DUrole{n}{lon}}\sphinxparamcomma \sphinxparam{\DUrole{n}{lat}}\sphinxparamcomma \sphinxparam{\DUrole{n}{datetime}\DUrole{o}{=}\DUrole{default_value}{None}}\sphinxparamcomma \sphinxparam{\DUrole{n}{uid}\DUrole{o}{=}\DUrole{default_value}{None}}\sphinxparamcomma \sphinxparam{\DUrole{n}{fix\_lon}\DUrole{o}{=}\DUrole{default_value}{True}}\sphinxparamcomma \sphinxparam{\DUrole{o}{**}\DUrole{n}{data}}}
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-\pysigstopsignatures
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-ICOADS Record class
-
-\sphinxAtStartPar
-This is a simple instance of an ICOARDS record, it requires position data.
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-\sphinxAtStartPar
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-\item {}
-\sphinxAtStartPar
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-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lat}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Vertical coordinate
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-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{datetime}} (\sphinxstyleliteralemphasis{\sphinxupquote{datetime}}\sphinxstyleliteralemphasis{\sphinxupquote{ | }}\sphinxstyleliteralemphasis{\sphinxupquote{None}}) \textendash{} Datetime of the record
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-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{uid}} (\sphinxstyleliteralemphasis{\sphinxupquote{str}}\sphinxstyleliteralemphasis{\sphinxupquote{ | }}\sphinxstyleliteralemphasis{\sphinxupquote{None}}) \textendash{} Unique Identifier
-
-\item {}
-\sphinxAtStartPar
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-\item {}
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-{\sphinxparam{\DUrole{n}{other}}}
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-\begin{quote}\begin{description}
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-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{east}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Eastern boundary of the Rectangle
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{south}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Southern boundary of the Rectangle
-
-\item {}
-\sphinxAtStartPar
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-
-\end{itemize}
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-
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-{\sphinxbfcode{\sphinxupquote{\DUrole{k}{property}\DUrole{w}{ }}}\sphinxbfcode{\sphinxupquote{lat}}\sphinxbfcode{\sphinxupquote{\DUrole{p}{:}\DUrole{w}{ }float}}}
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-
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-
-\end{fulllineitems}
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-
-\begin{fulllineitems}
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-{\sphinxbfcode{\sphinxupquote{\DUrole{k}{property}\DUrole{w}{ }}}\sphinxbfcode{\sphinxupquote{lon}}\sphinxbfcode{\sphinxupquote{\DUrole{p}{:}\DUrole{w}{ }float}}}
-\pysigstopsignatures
-\sphinxAtStartPar
-Centre longitude of the Rectangle
-
-\end{fulllineitems}
-
-\index{lon\_range (GeoSpatialTools.quadtree.Rectangle property)@\spxentry{lon\_range}\spxextra{GeoSpatialTools.quadtree.Rectangle property}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.quadtree.Rectangle.lon_range}}
-\pysigstartsignatures
-\pysigline
-{\sphinxbfcode{\sphinxupquote{\DUrole{k}{property}\DUrole{w}{ }}}\sphinxbfcode{\sphinxupquote{lon\_range}}\sphinxbfcode{\sphinxupquote{\DUrole{p}{:}\DUrole{w}{ }float}}}
-\pysigstopsignatures
-\sphinxAtStartPar
-Longitude range of the Rectangle
-
-\end{fulllineitems}
-
-\index{nearby() (GeoSpatialTools.quadtree.Rectangle method)@\spxentry{nearby()}\spxextra{GeoSpatialTools.quadtree.Rectangle method}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.quadtree.Rectangle.nearby}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxbfcode{\sphinxupquote{nearby}}}
-{\sphinxparam{\DUrole{n}{point}}\sphinxparamcomma \sphinxparam{\DUrole{n}{dist}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Check if point is nearby the Rectangle
-\begin{quote}\begin{description}
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-\DUrole{sphinx_autodoc_typehints-type}{\sphinxcode{\sphinxupquote{bool}}}
-
-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-
-\end{fulllineitems}
-
-\index{module@\spxentry{module}!GeoSpatialTools.octtree@\spxentry{GeoSpatialTools.octtree}}\index{GeoSpatialTools.octtree@\spxentry{GeoSpatialTools.octtree}!module@\spxentry{module}}
-
-\section{OctTree}
-\label{\detokenize{users_guide:octtree}}\label{\detokenize{users_guide:module-GeoSpatialTools.octtree}}
-\sphinxAtStartPar
-Constuctors for OctTree classes that can decrease the number of comparisons
-for detecting nearby records for example. This is an implementation that uses
-Haversine distances for comparisons between records for identification of
-neighbours.
-\index{OctTree (class in GeoSpatialTools.octtree)@\spxentry{OctTree}\spxextra{class in GeoSpatialTools.octtree}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.octtree.OctTree}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxbfcode{\sphinxupquote{\DUrole{k}{class}\DUrole{w}{ }}}\sphinxcode{\sphinxupquote{GeoSpatialTools.octtree.}}\sphinxbfcode{\sphinxupquote{OctTree}}}
-{\sphinxparam{\DUrole{n}{boundary}}\sphinxparamcomma \sphinxparam{\DUrole{n}{capacity}\DUrole{o}{=}\DUrole{default_value}{5}}\sphinxparamcomma \sphinxparam{\DUrole{n}{depth}\DUrole{o}{=}\DUrole{default_value}{0}}\sphinxparamcomma \sphinxparam{\DUrole{n}{max\_depth}\DUrole{o}{=}\DUrole{default_value}{None}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-A Simple OctTree class for PyCOADS.
-
-\sphinxAtStartPar
-Acts as a space\sphinxhyphen{}time OctTree on the surface of Earth, allowing for querying
-nearby points faster than searching a full DataFrame. As SpaceTimeRecords
-are added to the OctTree, the OctTree divides into 8 children as the
-capacity is reached. Additional SpaceTimeRecords are then added to the
-children where they fall within the child OctTree’s boundary.
-
-\sphinxAtStartPar
-SpaceTimeRecords already part of the OctTree before divided are not
-distributed to the children OctTrees.
-
-\sphinxAtStartPar
-Whilst the OctTree has a temporal component, and was designed to utilise
-datetime / timedelta objects, numeric values and ranges can be used. This
-usage must be consistent for the boundary and all SpaceTimeRecords that
-are part of the OctTree. This allows for usage of pentad, timestamp,
-Julian day, etc. as datetime values.
-\begin{quote}\begin{description}
-\sphinxlineitem{Parameters}\begin{itemize}
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{boundary}} ({\hyperref[\detokenize{users_guide:GeoSpatialTools.octtree.SpaceTimeRectangle}]{\sphinxcrossref{\sphinxstyleliteralemphasis{\sphinxupquote{SpaceTimeRectangle}}}}}) \textendash{} The bounding SpaceTimeRectangle of the QuadTree
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{capacity}} (\sphinxstyleliteralemphasis{\sphinxupquote{int}}) \textendash{} The capacity of each cell, if max\_depth is set then a cell at the
-maximum depth may contain more points than the capacity.
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{depth}} (\sphinxstyleliteralemphasis{\sphinxupquote{int}}) \textendash{} The current depth of the cell. Initialises to zero if unset.
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{max\_depth}} (\sphinxstyleliteralemphasis{\sphinxupquote{int}}\sphinxstyleliteralemphasis{\sphinxupquote{ | }}\sphinxstyleliteralemphasis{\sphinxupquote{None}}) \textendash{} The maximum depth of the QuadTree. If set, this can override the
-capacity for cells at the maximum depth.
-
-\end{itemize}
-
-\end{description}\end{quote}
-\index{divide() (GeoSpatialTools.octtree.OctTree method)@\spxentry{divide()}\spxextra{GeoSpatialTools.octtree.OctTree method}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.octtree.OctTree.divide}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxbfcode{\sphinxupquote{divide}}}
-{}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Divide the QuadTree
-
-\end{fulllineitems}
-
-\index{insert() (GeoSpatialTools.octtree.OctTree method)@\spxentry{insert()}\spxextra{GeoSpatialTools.octtree.OctTree method}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.octtree.OctTree.insert}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxbfcode{\sphinxupquote{insert}}}
-{\sphinxparam{\DUrole{n}{point}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Insert a SpaceTimeRecord into the QuadTree.
-
-\sphinxAtStartPar
-Note that the SpaceTimeRecord can have numeric datetime values if that
-is consistent with the OctTree.
-\begin{quote}\begin{description}
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-\DUrole{sphinx_autodoc_typehints-type}{\sphinxcode{\sphinxupquote{bool}}}
-
-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-\index{len() (GeoSpatialTools.octtree.OctTree method)@\spxentry{len()}\spxextra{GeoSpatialTools.octtree.OctTree method}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.octtree.OctTree.len}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxbfcode{\sphinxupquote{len}}}
-{\sphinxparam{\DUrole{n}{\_current\_len}\DUrole{o}{=}\DUrole{default_value}{0}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Get the number of points in the OctTree
-\begin{quote}\begin{description}
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-\DUrole{sphinx_autodoc_typehints-type}{\sphinxcode{\sphinxupquote{int}}}
-
-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-\index{nearby\_points() (GeoSpatialTools.octtree.OctTree method)@\spxentry{nearby\_points()}\spxextra{GeoSpatialTools.octtree.OctTree method}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.octtree.OctTree.nearby_points}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxbfcode{\sphinxupquote{nearby\_points}}}
-{\sphinxparam{\DUrole{n}{point}}\sphinxparamcomma \sphinxparam{\DUrole{n}{dist}}\sphinxparamcomma \sphinxparam{\DUrole{n}{t\_dist}}\sphinxparamcomma \sphinxparam{\DUrole{n}{points}\DUrole{o}{=}\DUrole{default_value}{None}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Get all points that are nearby another point.
-
-\sphinxAtStartPar
-Query the OctTree to find all SpaceTimeRecords within the OctTree that
-are nearby to the query SpaceTimeRecord. This search should be faster
-than searching through all records, since only OctTree children whose
-boundaries are close to the query SpaceTimeRecord are evaluated.
-\begin{quote}\begin{description}
-\sphinxlineitem{Parameters}\begin{itemize}
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{point}} ({\hyperref[\detokenize{users_guide:GeoSpatialTools.octtree.SpaceTimeRecord}]{\sphinxcrossref{\sphinxstyleliteralemphasis{\sphinxupquote{SpaceTimeRecord}}}}}) \textendash{} The query point.
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{dist}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} The distance for comparison. Note that Haversine distance is used
-as the distance metric as the query SpaceTimeRecord and OctTree are
-assumed to lie on the surface of Earth.
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{t\_dist}} (\sphinxstyleliteralemphasis{\sphinxupquote{datetime.timedelta}}) \textendash{} Max time gap between SpaceTimeRecords within the OctTree and the
-query SpaceTimeRecord. Can be numeric if the OctTree boundaries,
-SpaceTimeRecords, and query SpaceTimeRecord have numeric datetime
-values and ranges.
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{points}} ({\hyperref[\detokenize{users_guide:GeoSpatialTools.octtree.SpaceTimeRecords}]{\sphinxcrossref{\sphinxstyleliteralemphasis{\sphinxupquote{SpaceTimeRecords}}}}}\sphinxstyleliteralemphasis{\sphinxupquote{ | }}\sphinxstyleliteralemphasis{\sphinxupquote{None}}) \textendash{} List of SpaceTimeRecords already found. Most use cases will be to
-not set this value, since it’s main use is for passing onto the
-children OctTrees.
-
-\end{itemize}
-
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-\DUrole{sphinx_autodoc_typehints-type}{{\hyperref[\detokenize{users_guide:GeoSpatialTools.octtree.SpaceTimeRecords}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{SpaceTimeRecords}}}}}}
-
-\sphinxlineitem{Returns}
-\sphinxAtStartPar
-\begin{itemize}
-\item {}
-\sphinxAtStartPar
-\sphinxstylestrong{SpaceTimeRecords} (\sphinxstyleemphasis{A list of SpaceTimeRecords whose distance to the})
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleemphasis{query SpaceTimeRecord is \textless{}= dist, and the datetimes of the}
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleemphasis{SpaceTimeRecords fall within the datetime range of the query}
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleemphasis{SpaceTimeRecord.}
-
-\end{itemize}
-
-
-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-\index{query() (GeoSpatialTools.octtree.OctTree method)@\spxentry{query()}\spxextra{GeoSpatialTools.octtree.OctTree method}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.octtree.OctTree.query}}
-\pysigstartsignatures
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-{\sphinxbfcode{\sphinxupquote{query}}}
-{\sphinxparam{\DUrole{n}{rect}}\sphinxparamcomma \sphinxparam{\DUrole{n}{points}\DUrole{o}{=}\DUrole{default_value}{None}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Get points that fall in a SpaceTimeRectangle
-\begin{quote}\begin{description}
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-\DUrole{sphinx_autodoc_typehints-type}{{\hyperref[\detokenize{users_guide:GeoSpatialTools.octtree.SpaceTimeRecords}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{SpaceTimeRecords}}}}}}
-
-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-\index{query\_ellipse() (GeoSpatialTools.octtree.OctTree method)@\spxentry{query\_ellipse()}\spxextra{GeoSpatialTools.octtree.OctTree method}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.octtree.OctTree.query_ellipse}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxbfcode{\sphinxupquote{query\_ellipse}}}
-{\sphinxparam{\DUrole{n}{ellipse}}\sphinxparamcomma \sphinxparam{\DUrole{n}{points}\DUrole{o}{=}\DUrole{default_value}{None}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Get points that fall in an ellipse.
-\begin{quote}\begin{description}
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-\DUrole{sphinx_autodoc_typehints-type}{{\hyperref[\detokenize{users_guide:GeoSpatialTools.octtree.SpaceTimeRecords}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{SpaceTimeRecords}}}}}}
-
-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-\index{remove() (GeoSpatialTools.octtree.OctTree method)@\spxentry{remove()}\spxextra{GeoSpatialTools.octtree.OctTree method}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.octtree.OctTree.remove}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxbfcode{\sphinxupquote{remove}}}
-{\sphinxparam{\DUrole{n}{point}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Remove a SpaceTimeRecord from the OctTree if it is in the OctTree.
-
-\sphinxAtStartPar
-Returns True if the SpaceTimeRecord is removed.
-\begin{quote}\begin{description}
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-\DUrole{sphinx_autodoc_typehints-type}{\sphinxcode{\sphinxupquote{bool}}}
-
-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-
-\end{fulllineitems}
-
-\index{SpaceTimeEllipse (class in GeoSpatialTools.octtree)@\spxentry{SpaceTimeEllipse}\spxextra{class in GeoSpatialTools.octtree}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.octtree.SpaceTimeEllipse}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxbfcode{\sphinxupquote{\DUrole{k}{class}\DUrole{w}{ }}}\sphinxcode{\sphinxupquote{GeoSpatialTools.octtree.}}\sphinxbfcode{\sphinxupquote{SpaceTimeEllipse}}}
-{\sphinxparam{\DUrole{n}{lon}}\sphinxparamcomma \sphinxparam{\DUrole{n}{lat}}\sphinxparamcomma \sphinxparam{\DUrole{n}{a}}\sphinxparamcomma \sphinxparam{\DUrole{n}{b}}\sphinxparamcomma \sphinxparam{\DUrole{n}{theta}}\sphinxparamcomma \sphinxparam{\DUrole{n}{start}}\sphinxparamcomma \sphinxparam{\DUrole{n}{end}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-A simple Ellipse Class for an ellipse on the surface of a sphere.
-\begin{quote}\begin{description}
-\sphinxlineitem{Parameters}\begin{itemize}
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lon}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Horizontal centre of the ellipse
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lat}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Vertical centre of the ellipse
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{a}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Length of the semi\sphinxhyphen{}major axis
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{b}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Length of the semi\sphinxhyphen{}minor axis
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{theta}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Angle of the semi\sphinxhyphen{}major axis from horizontal anti\sphinxhyphen{}clockwise in radians
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{start}} (\sphinxstyleliteralemphasis{\sphinxupquote{datetime.datetime}}) \textendash{} Start date of the Ellipse
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{end}} (\sphinxstyleliteralemphasis{\sphinxupquote{datetime.datetime}}) \textendash{} Send date of the Ellipse
-
-\end{itemize}
-
-\end{description}\end{quote}
-\index{contains() (GeoSpatialTools.octtree.SpaceTimeEllipse method)@\spxentry{contains()}\spxextra{GeoSpatialTools.octtree.SpaceTimeEllipse method}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.octtree.SpaceTimeEllipse.contains}}
-\pysigstartsignatures
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-{\sphinxbfcode{\sphinxupquote{contains}}}
-{\sphinxparam{\DUrole{n}{point}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Test if a point is contained within the Ellipse
-\begin{quote}\begin{description}
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-\DUrole{sphinx_autodoc_typehints-type}{\sphinxcode{\sphinxupquote{bool}}}
-
-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-\index{nearby\_rect() (GeoSpatialTools.octtree.SpaceTimeEllipse method)@\spxentry{nearby\_rect()}\spxextra{GeoSpatialTools.octtree.SpaceTimeEllipse method}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.octtree.SpaceTimeEllipse.nearby_rect}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxbfcode{\sphinxupquote{nearby\_rect}}}
-{\sphinxparam{\DUrole{n}{rect}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Test if a rectangle is near to the Ellipse
-\begin{quote}\begin{description}
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-\DUrole{sphinx_autodoc_typehints-type}{\sphinxcode{\sphinxupquote{bool}}}
-
-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-
-\end{fulllineitems}
-
-\index{SpaceTimeRecord (class in GeoSpatialTools.octtree)@\spxentry{SpaceTimeRecord}\spxextra{class in GeoSpatialTools.octtree}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.octtree.SpaceTimeRecord}}
-\pysigstartsignatures
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-{\sphinxbfcode{\sphinxupquote{\DUrole{k}{class}\DUrole{w}{ }}}\sphinxcode{\sphinxupquote{GeoSpatialTools.octtree.}}\sphinxbfcode{\sphinxupquote{SpaceTimeRecord}}}
-{\sphinxparam{\DUrole{n}{lon}}\sphinxparamcomma \sphinxparam{\DUrole{n}{lat}}\sphinxparamcomma \sphinxparam{\DUrole{n}{datetime}}\sphinxparamcomma \sphinxparam{\DUrole{n}{uid}\DUrole{o}{=}\DUrole{default_value}{None}}\sphinxparamcomma \sphinxparam{\DUrole{n}{fix\_lon}\DUrole{o}{=}\DUrole{default_value}{True}}\sphinxparamcomma \sphinxparam{\DUrole{o}{**}\DUrole{n}{data}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-ICOADS Record class.
-
-\sphinxAtStartPar
-This is a simple instance of an ICOARDS record, it requires position and
-temporal data. It can optionally include a UID and extra data.
-
-\sphinxAtStartPar
-The temporal component was designed to use \sphinxtitleref{datetime} values, however all
-methods will work with numeric datetime information \sphinxhyphen{} for example a pentad,
-timestamp, julian day, etc. Note that any uses within an OctTree and
-SpaceTimeRectangle must also have timedelta values replaced with numeric
-ranges in this case.
-
-\sphinxAtStartPar
-Equality is checked only on the required fields + UID if it is specified.
-\begin{quote}\begin{description}
-\sphinxlineitem{Parameters}\begin{itemize}
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lon}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Horizontal coordinate (longitude).
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lat}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Vertical coordinate (latitude).
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{datetime}} (\sphinxstyleliteralemphasis{\sphinxupquote{datetime.datetime}}) \textendash{} Datetime of the record. Can also be a numeric value such as pentad.
-Comparisons between Records with datetime and Records with numeric
-datetime will fail.
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{uid}} (\sphinxstyleliteralemphasis{\sphinxupquote{str}}\sphinxstyleliteralemphasis{\sphinxupquote{ | }}\sphinxstyleliteralemphasis{\sphinxupquote{None}}) \textendash{} Unique Identifier.
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{fix\_lon}} (\sphinxstyleliteralemphasis{\sphinxupquote{bool}}) \textendash{} Force longitude to \sphinxhyphen{}180, 180
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{**data}} \textendash{} Additional data passed to the SpaceTimeRecord for use by other functions
-or classes.
-
-\end{itemize}
-
-\end{description}\end{quote}
-\index{distance() (GeoSpatialTools.octtree.SpaceTimeRecord method)@\spxentry{distance()}\spxextra{GeoSpatialTools.octtree.SpaceTimeRecord method}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.octtree.SpaceTimeRecord.distance}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxbfcode{\sphinxupquote{distance}}}
-{\sphinxparam{\DUrole{n}{other}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Compute the Haversine distance to another SpaceTimeRecord.
-Only computes spatial distance.
-\begin{quote}\begin{description}
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-\DUrole{sphinx_autodoc_typehints-type}{\sphinxcode{\sphinxupquote{float}}}
-
-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-
-\end{fulllineitems}
-
-\index{SpaceTimeRecords (class in GeoSpatialTools.octtree)@\spxentry{SpaceTimeRecords}\spxextra{class in GeoSpatialTools.octtree}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.octtree.SpaceTimeRecords}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxbfcode{\sphinxupquote{\DUrole{k}{class}\DUrole{w}{ }}}\sphinxcode{\sphinxupquote{GeoSpatialTools.octtree.}}\sphinxbfcode{\sphinxupquote{SpaceTimeRecords}}}
-{\sphinxparam{\DUrole{n}{iterable}\DUrole{o}{=}\DUrole{default_value}{()}}\sphinxparamcomma \sphinxparam{\DUrole{positional-only-separator}{\DUrole{o}{\sphinxstyleabbreviation{/} (Positional\sphinxhyphen{}only parameter separator (PEP 570))}}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-List of SpaceTimeRecords
-
-\end{fulllineitems}
-
-\index{SpaceTimeRectangle (class in GeoSpatialTools.octtree)@\spxentry{SpaceTimeRectangle}\spxextra{class in GeoSpatialTools.octtree}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.octtree.SpaceTimeRectangle}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxbfcode{\sphinxupquote{\DUrole{k}{class}\DUrole{w}{ }}}\sphinxcode{\sphinxupquote{GeoSpatialTools.octtree.}}\sphinxbfcode{\sphinxupquote{SpaceTimeRectangle}}}
-{\sphinxparam{\DUrole{n}{west}}\sphinxparamcomma \sphinxparam{\DUrole{n}{east}}\sphinxparamcomma \sphinxparam{\DUrole{n}{south}}\sphinxparamcomma \sphinxparam{\DUrole{n}{north}}\sphinxparamcomma \sphinxparam{\DUrole{n}{start}}\sphinxparamcomma \sphinxparam{\DUrole{n}{end}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-A simple Space Time SpaceTimeRectangle class.
-
-\sphinxAtStartPar
-This constructs a simple Rectangle object.
-The defining coordinates are the centres of the box, and the extents
-are the full width, height, and time extent.
-
-\sphinxAtStartPar
-Whilst the rectangle is assumed to lie on the surface of Earth, this is
-a projection as the rectangle is defined by a longitude/latitude range.
-
-\sphinxAtStartPar
-The temporal components are defined in the same way as the spatial
-components, that is that the \sphinxtitleref{datetime} component (t) is the “centreâ€, and
-the time extent (dt) is the full time range of the box.
-\begin{quote}\begin{description}
-\sphinxlineitem{Parameters}\begin{itemize}
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{west}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Western boundary of the Rectangle
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{east}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Eastern boundary of the Rectangle
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{south}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Southern boundary of the Rectangle
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{north}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Northern boundary of the Rectangle
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{start}} (\sphinxstyleliteralemphasis{\sphinxupquote{datetime.datetime}}) \textendash{} Start datetime of the Rectangle
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{end}} (\sphinxstyleliteralemphasis{\sphinxupquote{datetime.datetime}}) \textendash{} End datetime of the Rectangle
-
-\end{itemize}
-
-\end{description}\end{quote}
-\index{centre\_datetime (GeoSpatialTools.octtree.SpaceTimeRectangle property)@\spxentry{centre\_datetime}\spxextra{GeoSpatialTools.octtree.SpaceTimeRectangle property}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.octtree.SpaceTimeRectangle.centre_datetime}}
-\pysigstartsignatures
-\pysigline
-{\sphinxbfcode{\sphinxupquote{\DUrole{k}{property}\DUrole{w}{ }}}\sphinxbfcode{\sphinxupquote{centre\_datetime}}\sphinxbfcode{\sphinxupquote{\DUrole{p}{:}\DUrole{w}{ }datetime}}}
-\pysigstopsignatures
-\sphinxAtStartPar
-The midpoint time of the Rectangle
-
-\end{fulllineitems}
-
-\index{contains() (GeoSpatialTools.octtree.SpaceTimeRectangle method)@\spxentry{contains()}\spxextra{GeoSpatialTools.octtree.SpaceTimeRectangle method}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.octtree.SpaceTimeRectangle.contains}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxbfcode{\sphinxupquote{contains}}}
-{\sphinxparam{\DUrole{n}{point}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Test if a point is contained within the SpaceTimeRectangle
-\begin{quote}\begin{description}
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-\DUrole{sphinx_autodoc_typehints-type}{\sphinxcode{\sphinxupquote{bool}}}
-
-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-\index{edge\_dist (GeoSpatialTools.octtree.SpaceTimeRectangle property)@\spxentry{edge\_dist}\spxextra{GeoSpatialTools.octtree.SpaceTimeRectangle property}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.octtree.SpaceTimeRectangle.edge_dist}}
-\pysigstartsignatures
-\pysigline
-{\sphinxbfcode{\sphinxupquote{\DUrole{k}{property}\DUrole{w}{ }}}\sphinxbfcode{\sphinxupquote{edge\_dist}}\sphinxbfcode{\sphinxupquote{\DUrole{p}{:}\DUrole{w}{ }float}}}
-\pysigstopsignatures
-\sphinxAtStartPar
-Approximate maximum distance from the centre to an edge
-
-\end{fulllineitems}
-
-\index{intersects() (GeoSpatialTools.octtree.SpaceTimeRectangle method)@\spxentry{intersects()}\spxextra{GeoSpatialTools.octtree.SpaceTimeRectangle method}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.octtree.SpaceTimeRectangle.intersects}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxbfcode{\sphinxupquote{intersects}}}
-{\sphinxparam{\DUrole{n}{other}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Test if another Rectangle object intersects this Rectangle
-\begin{quote}\begin{description}
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-\DUrole{sphinx_autodoc_typehints-type}{\sphinxcode{\sphinxupquote{bool}}}
-
-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-\index{lat (GeoSpatialTools.octtree.SpaceTimeRectangle property)@\spxentry{lat}\spxextra{GeoSpatialTools.octtree.SpaceTimeRectangle property}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.octtree.SpaceTimeRectangle.lat}}
-\pysigstartsignatures
-\pysigline
-{\sphinxbfcode{\sphinxupquote{\DUrole{k}{property}\DUrole{w}{ }}}\sphinxbfcode{\sphinxupquote{lat}}\sphinxbfcode{\sphinxupquote{\DUrole{p}{:}\DUrole{w}{ }float}}}
-\pysigstopsignatures
-\sphinxAtStartPar
-Centre latitude of the Rectangle
-
-\end{fulllineitems}
-
-\index{lat\_range (GeoSpatialTools.octtree.SpaceTimeRectangle property)@\spxentry{lat\_range}\spxextra{GeoSpatialTools.octtree.SpaceTimeRectangle property}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.octtree.SpaceTimeRectangle.lat_range}}
-\pysigstartsignatures
-\pysigline
-{\sphinxbfcode{\sphinxupquote{\DUrole{k}{property}\DUrole{w}{ }}}\sphinxbfcode{\sphinxupquote{lat\_range}}\sphinxbfcode{\sphinxupquote{\DUrole{p}{:}\DUrole{w}{ }float}}}
-\pysigstopsignatures
-\sphinxAtStartPar
-Latitude range of the Rectangle
-
-\end{fulllineitems}
-
-\index{lon (GeoSpatialTools.octtree.SpaceTimeRectangle property)@\spxentry{lon}\spxextra{GeoSpatialTools.octtree.SpaceTimeRectangle property}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.octtree.SpaceTimeRectangle.lon}}
-\pysigstartsignatures
-\pysigline
-{\sphinxbfcode{\sphinxupquote{\DUrole{k}{property}\DUrole{w}{ }}}\sphinxbfcode{\sphinxupquote{lon}}\sphinxbfcode{\sphinxupquote{\DUrole{p}{:}\DUrole{w}{ }float}}}
-\pysigstopsignatures
-\sphinxAtStartPar
-Centre longitude of the Rectangle
-
-\end{fulllineitems}
-
-\index{lon\_range (GeoSpatialTools.octtree.SpaceTimeRectangle property)@\spxentry{lon\_range}\spxextra{GeoSpatialTools.octtree.SpaceTimeRectangle property}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.octtree.SpaceTimeRectangle.lon_range}}
-\pysigstartsignatures
-\pysigline
-{\sphinxbfcode{\sphinxupquote{\DUrole{k}{property}\DUrole{w}{ }}}\sphinxbfcode{\sphinxupquote{lon\_range}}\sphinxbfcode{\sphinxupquote{\DUrole{p}{:}\DUrole{w}{ }float}}}
-\pysigstopsignatures
-\sphinxAtStartPar
-Longitude range of the Rectangle
-
-\end{fulllineitems}
-
-\index{nearby() (GeoSpatialTools.octtree.SpaceTimeRectangle method)@\spxentry{nearby()}\spxextra{GeoSpatialTools.octtree.SpaceTimeRectangle method}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.octtree.SpaceTimeRectangle.nearby}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxbfcode{\sphinxupquote{nearby}}}
-{\sphinxparam{\DUrole{n}{point}}\sphinxparamcomma \sphinxparam{\DUrole{n}{dist}}\sphinxparamcomma \sphinxparam{\DUrole{n}{t\_dist}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Check if point is nearby the Rectangle
-
-\sphinxAtStartPar
-Determines if a SpaceTimeRecord that falls on the surface of Earth is
-nearby to the rectangle in space and time. This calculation uses the
-Haversine distance metric.
-
-\sphinxAtStartPar
-Distance from rectangle to point is challenging on the surface of a
-sphere, this calculation will return false positives as a check based
-on the distance from the centre of the rectangle to the corners, or
-to its Eastern edge (if the rectangle crosses the equator) is used in
-combination with the input distance.
-
-\sphinxAtStartPar
-The primary use\sphinxhyphen{}case of this method is for querying an OctTree for
-nearby Records.
-\begin{quote}\begin{description}
-\sphinxlineitem{Parameters}\begin{itemize}
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{point}} ({\hyperref[\detokenize{users_guide:GeoSpatialTools.octtree.SpaceTimeRecord}]{\sphinxcrossref{\sphinxstyleliteralemphasis{\sphinxupquote{SpaceTimeRecord}}}}})
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{dist}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}\sphinxstyleliteralemphasis{\sphinxupquote{,}})
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{t\_dist}} (\sphinxstyleliteralemphasis{\sphinxupquote{datetime.timedelta}})
-
-\end{itemize}
-
-\sphinxlineitem{Returns}
-\sphinxAtStartPar
-\sphinxstylestrong{bool}
-
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-True if the point is \textless{}= dist + max(dist(centre, corners))
-
-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-\index{time\_range (GeoSpatialTools.octtree.SpaceTimeRectangle property)@\spxentry{time\_range}\spxextra{GeoSpatialTools.octtree.SpaceTimeRectangle property}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.octtree.SpaceTimeRectangle.time_range}}
-\pysigstartsignatures
-\pysigline
-{\sphinxbfcode{\sphinxupquote{\DUrole{k}{property}\DUrole{w}{ }}}\sphinxbfcode{\sphinxupquote{time\_range}}\sphinxbfcode{\sphinxupquote{\DUrole{p}{:}\DUrole{w}{ }timedelta}}}
-\pysigstopsignatures
-\sphinxAtStartPar
-The time extent of the Rectangle
-
-\end{fulllineitems}
-
-
-\end{fulllineitems}
-
-\index{module@\spxentry{module}!GeoSpatialTools.kdtree@\spxentry{GeoSpatialTools.kdtree}}\index{GeoSpatialTools.kdtree@\spxentry{GeoSpatialTools.kdtree}!module@\spxentry{module}}
-
-\section{KDTree}
-\label{\detokenize{users_guide:kdtree}}\label{\detokenize{users_guide:module-GeoSpatialTools.kdtree}}
-\sphinxAtStartPar
-An implementation of KDTree using Haversine Distance for GeoSpatial analysis.
-Useful tool for quickly searching for nearest neighbours. The implementation is
-a K=2 or 2DTree as only 2 dimensions (longitude and latitude) are used.
-
-\sphinxAtStartPar
-Haversine distances are used for comparisons, so that the spherical geometry
-of the earth is accounted for.
-\index{KDTree (class in GeoSpatialTools.kdtree)@\spxentry{KDTree}\spxextra{class in GeoSpatialTools.kdtree}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.kdtree.KDTree}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxbfcode{\sphinxupquote{\DUrole{k}{class}\DUrole{w}{ }}}\sphinxcode{\sphinxupquote{GeoSpatialTools.kdtree.}}\sphinxbfcode{\sphinxupquote{KDTree}}}
-{\sphinxparam{\DUrole{n}{points}}\sphinxparamcomma \sphinxparam{\DUrole{n}{depth}\DUrole{o}{=}\DUrole{default_value}{0}}\sphinxparamcomma \sphinxparam{\DUrole{n}{max\_depth}\DUrole{o}{=}\DUrole{default_value}{20}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-A Haverine distance implementation of a balanced KDTree.
-
-\sphinxAtStartPar
-This implementation is a \_balanced\_ KDTree, each leaf node should have the
-same number of points (or differ by 1 depending on the number of points
-the KDTree is intialised with).
-
-\sphinxAtStartPar
-The KDTree partitions in each of the lon and lat dimensions alternatively
-in sequence by splitting at the median of the dimension of the points
-assigned to the branch.
-\begin{quote}\begin{description}
-\sphinxlineitem{Parameters}\begin{itemize}
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{points}} (\sphinxstyleliteralemphasis{\sphinxupquote{list}}\sphinxstyleliteralemphasis{\sphinxupquote{{[}}}{\hyperref[\detokenize{users_guide:GeoSpatialTools.quadtree.Record}]{\sphinxcrossref{\sphinxstyleliteralemphasis{\sphinxupquote{Record}}}}}\sphinxstyleliteralemphasis{\sphinxupquote{{]}}}) \textendash{} A list of GeoSpatialTools.Record instances.
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{depth}} (\sphinxstyleliteralemphasis{\sphinxupquote{int}}) \textendash{} The current depth of the KDTree, you should set this to 0, it is used
-internally.
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{max\_depth}} (\sphinxstyleliteralemphasis{\sphinxupquote{int}}) \textendash{} The maximium depth of the KDTree. The leaf nodes will have depth no
-larger than this value. Leaf nodes will not be created if there is
-only 1 point in the branch.
-
-\end{itemize}
-
-\end{description}\end{quote}
-\index{delete() (GeoSpatialTools.kdtree.KDTree method)@\spxentry{delete()}\spxextra{GeoSpatialTools.kdtree.KDTree method}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.kdtree.KDTree.delete}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxbfcode{\sphinxupquote{delete}}}
-{\sphinxparam{\DUrole{n}{point}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Delete a Record from the KDTree. May unbalance the KDTree
-\begin{quote}\begin{description}
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-\DUrole{sphinx_autodoc_typehints-type}{\sphinxcode{\sphinxupquote{bool}}}
-
-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-\index{insert() (GeoSpatialTools.kdtree.KDTree method)@\spxentry{insert()}\spxextra{GeoSpatialTools.kdtree.KDTree method}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.kdtree.KDTree.insert}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxbfcode{\sphinxupquote{insert}}}
-{\sphinxparam{\DUrole{n}{point}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Insert a Record into the KDTree. May unbalance the KDTree.
-
-\sphinxAtStartPar
-The point will not be inserted if it is already in the KDTree.
-\begin{quote}\begin{description}
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-\DUrole{sphinx_autodoc_typehints-type}{\sphinxcode{\sphinxupquote{bool}}}
-
-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-\index{query() (GeoSpatialTools.kdtree.KDTree method)@\spxentry{query()}\spxextra{GeoSpatialTools.kdtree.KDTree method}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.kdtree.KDTree.query}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxbfcode{\sphinxupquote{query}}}
-{\sphinxparam{\DUrole{n}{point}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Find the nearest Record within the KDTree to a query Record
-\begin{quote}\begin{description}
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-\DUrole{sphinx_autodoc_typehints-type}{\sphinxcode{\sphinxupquote{Tuple}}{[}\sphinxcode{\sphinxupquote{List}}{[}{\hyperref[\detokenize{users_guide:GeoSpatialTools.quadtree.Record}]{\sphinxcrossref{\sphinxcode{\sphinxupquote{Record}}}}}{]}, \sphinxcode{\sphinxupquote{float}}{]}}
-
-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-
-\end{fulllineitems}
-
-\index{module@\spxentry{module}!GeoSpatialTools.great\_circle@\spxentry{GeoSpatialTools.great\_circle}}\index{GeoSpatialTools.great\_circle@\spxentry{GeoSpatialTools.great\_circle}!module@\spxentry{module}}
-
-\section{GreatCircle}
-\label{\detokenize{users_guide:greatcircle}}\label{\detokenize{users_guide:module-GeoSpatialTools.great_circle}}
-\sphinxAtStartPar
-Constructors and methods for interacting with GreatCircle objects, including
-comparisons between GreatCircle objects.
-\index{GreatCircle (class in GeoSpatialTools.great\_circle)@\spxentry{GreatCircle}\spxextra{class in GeoSpatialTools.great\_circle}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.great_circle.GreatCircle}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxbfcode{\sphinxupquote{\DUrole{k}{class}\DUrole{w}{ }}}\sphinxcode{\sphinxupquote{GeoSpatialTools.great\_circle.}}\sphinxbfcode{\sphinxupquote{GreatCircle}}}
-{\sphinxparam{\DUrole{n}{lon0}}\sphinxparamcomma \sphinxparam{\DUrole{n}{lat0}}\sphinxparamcomma \sphinxparam{\DUrole{n}{lon1}}\sphinxparamcomma \sphinxparam{\DUrole{n}{lat1}}\sphinxparamcomma \sphinxparam{\DUrole{n}{R}\DUrole{o}{=}\DUrole{default_value}{6371}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-A GreatCircle object for a pair of positions.
-
-\sphinxAtStartPar
-Construct a great circle path between a pair of positions.
-
-\sphinxAtStartPar
-\sphinxurl{https://www.boeing-727.com/Data/fly\%20odds/distance.html}
-\begin{quote}\begin{description}
-\sphinxlineitem{Parameters}\begin{itemize}
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lon0}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Longitude of start position.
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lat0}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Latitude of start position.
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lon1}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Longitude of end position.
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lat1}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Latitude of end position.
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{R}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Radius of the sphere. Default is Earth radius in km (6371.0).
-
-\end{itemize}
-
-\end{description}\end{quote}
-\index{dist\_from\_point() (GeoSpatialTools.great\_circle.GreatCircle method)@\spxentry{dist\_from\_point()}\spxextra{GeoSpatialTools.great\_circle.GreatCircle method}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.great_circle.GreatCircle.dist_from_point}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxbfcode{\sphinxupquote{dist\_from\_point}}}
-{\sphinxparam{\DUrole{n}{lon}}\sphinxparamcomma \sphinxparam{\DUrole{n}{lat}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Compute distance from the GreatCircle to a point on the sphere.
-\begin{quote}\begin{description}
-\sphinxlineitem{Parameters}\begin{itemize}
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lon}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Longitude of the position to test.
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lat}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Longitude of the position to test.
-
-\end{itemize}
-
-\sphinxlineitem{Returns}
-\sphinxAtStartPar
-Minimum distance between point and the GreatCircle arc.
-
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-float
-
-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-\index{intersection() (GeoSpatialTools.great\_circle.GreatCircle method)@\spxentry{intersection()}\spxextra{GeoSpatialTools.great\_circle.GreatCircle method}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.great_circle.GreatCircle.intersection}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxbfcode{\sphinxupquote{intersection}}}
-{\sphinxparam{\DUrole{n}{other}}\sphinxparamcomma \sphinxparam{\DUrole{n}{epsilon}\DUrole{o}{=}\DUrole{default_value}{0.01}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Determine intersection position with another GreatCircle.
-
-\sphinxAtStartPar
-Determine the location at which the GreatCircle intersects another
-GreatCircle arc. (To within some epsilon threshold).
-
-\sphinxAtStartPar
-Returns \sphinxtitleref{None} if there is no solution \sphinxhyphen{} either because there is no
-intersection point, or the planes generated from the arc and centre of
-the sphere are identical.
-\begin{quote}\begin{description}
-\sphinxlineitem{Parameters}\begin{itemize}
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{other}} ({\hyperref[\detokenize{users_guide:GeoSpatialTools.great_circle.GreatCircle}]{\sphinxcrossref{\sphinxstyleliteralemphasis{\sphinxupquote{GreatCircle}}}}}) \textendash{} Intersecting GreatCircle object
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{epsilon}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Threshold for intersection
-
-\end{itemize}
-
-\sphinxlineitem{Returns}
-\sphinxAtStartPar
-Position of intersection
-
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-(float, float) | None
-
-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-\index{intersection\_angle() (GeoSpatialTools.great\_circle.GreatCircle method)@\spxentry{intersection\_angle()}\spxextra{GeoSpatialTools.great\_circle.GreatCircle method}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.great_circle.GreatCircle.intersection_angle}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxbfcode{\sphinxupquote{intersection\_angle}}}
-{\sphinxparam{\DUrole{n}{other}}\sphinxparamcomma \sphinxparam{\DUrole{n}{epsilon}\DUrole{o}{=}\DUrole{default_value}{0.01}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Get angle of intersection with another GreatCircle.
-
-\sphinxAtStartPar
-Get the angle of intersection with another GreatCircle arc. Returns
-None if there is no intersection.
-
-\sphinxAtStartPar
-The intersection angle is computed using the normals of the planes
-formed by the two intersecting great circle objects.
-\begin{quote}\begin{description}
-\sphinxlineitem{Parameters}\begin{itemize}
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{other}} ({\hyperref[\detokenize{users_guide:GeoSpatialTools.great_circle.GreatCircle}]{\sphinxcrossref{\sphinxstyleliteralemphasis{\sphinxupquote{GreatCircle}}}}}) \textendash{} Intersecting GreatCircle object
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{epsilon}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Threshold for intersection
-
-\end{itemize}
-
-\sphinxlineitem{Returns}
-\sphinxAtStartPar
-Intersection angle in degrees
-
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-float | None
-
-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-
-\end{fulllineitems}
-
-\index{cartesian\_to\_lonlat() (in module GeoSpatialTools.great\_circle)@\spxentry{cartesian\_to\_lonlat()}\spxextra{in module GeoSpatialTools.great\_circle}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.great_circle.cartesian_to_lonlat}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxcode{\sphinxupquote{GeoSpatialTools.great\_circle.}}\sphinxbfcode{\sphinxupquote{cartesian\_to\_lonlat}}}
-{\sphinxparam{\DUrole{n}{x}}\sphinxparamcomma \sphinxparam{\DUrole{n}{y}}\sphinxparamcomma \sphinxparam{\DUrole{n}{z}}\sphinxparamcomma \sphinxparam{\DUrole{n}{to\_radians}\DUrole{o}{=}\DUrole{default_value}{False}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Get lon, and lat from cartesian coordinates.
-\begin{quote}\begin{description}
-\sphinxlineitem{Parameters}\begin{itemize}
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{x}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} x coordinate
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{y}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} y coordinate
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{z}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} z coordinate
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{to\_radians}} (\sphinxstyleliteralemphasis{\sphinxupquote{bool}}) \textendash{} Return angles in radians. Otherwise return values in degrees.
-
-\end{itemize}
-
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-\DUrole{sphinx_autodoc_typehints-type}{\sphinxcode{\sphinxupquote{tuple}}{[}\sphinxcode{\sphinxupquote{float}}, \sphinxcode{\sphinxupquote{float}}{]}}
-
-\sphinxlineitem{Returns}
-\sphinxAtStartPar
-\begin{itemize}
-\item {}
-\sphinxAtStartPar
-\sphinxstyleemphasis{(float, float)}
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleemphasis{lon, lat}
-
-\end{itemize}
-
-
-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-\index{polar\_to\_cartesian() (in module GeoSpatialTools.great\_circle)@\spxentry{polar\_to\_cartesian()}\spxextra{in module GeoSpatialTools.great\_circle}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.great_circle.polar_to_cartesian}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxcode{\sphinxupquote{GeoSpatialTools.great\_circle.}}\sphinxbfcode{\sphinxupquote{polar\_to\_cartesian}}}
-{\sphinxparam{\DUrole{n}{lon}}\sphinxparamcomma \sphinxparam{\DUrole{n}{lat}}\sphinxparamcomma \sphinxparam{\DUrole{n}{R}\DUrole{o}{=}\DUrole{default_value}{6371}}\sphinxparamcomma \sphinxparam{\DUrole{n}{to\_radians}\DUrole{o}{=}\DUrole{default_value}{True}}\sphinxparamcomma \sphinxparam{\DUrole{n}{normalised}\DUrole{o}{=}\DUrole{default_value}{True}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Convert from polars coordinates to cartesian.
-
-\sphinxAtStartPar
-Get cartesian coordinates from spherical polar coordinates. Default
-behaviour assumes lon and lat, so converts to radians. Set
-\sphinxtitleref{to\_radians=False} if the coordinates are already in radians.
-\begin{quote}\begin{description}
-\sphinxlineitem{Parameters}\begin{itemize}
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lon}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Longitude.
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lat}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Latitude.
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{R}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Radius of sphere.
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{to\_radians}} (\sphinxstyleliteralemphasis{\sphinxupquote{bool}}) \textendash{} Convert lon and lat to radians.
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{normalised}} (\sphinxstyleliteralemphasis{\sphinxupquote{bool}}) \textendash{} Return normalised vector (ignore R value).
-
-\end{itemize}
-
-\sphinxlineitem{Returns}
-\sphinxAtStartPar
-x, y, z cartesian coordinates.
-
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-(float, float, float)
-
-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-\index{module@\spxentry{module}!GeoSpatialTools.distance\_metrics@\spxentry{GeoSpatialTools.distance\_metrics}}\index{GeoSpatialTools.distance\_metrics@\spxentry{GeoSpatialTools.distance\_metrics}!module@\spxentry{module}}
-
-\section{Distance Metrics}
-\label{\detokenize{users_guide:distance-metrics}}\label{\detokenize{users_guide:module-GeoSpatialTools.distance_metrics}}
-\sphinxAtStartPar
-Functions for computing navigational information. Can be used to add
-navigational information to DataFrames.
-\index{bearing() (in module GeoSpatialTools.distance\_metrics)@\spxentry{bearing()}\spxextra{in module GeoSpatialTools.distance\_metrics}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.distance_metrics.bearing}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxcode{\sphinxupquote{GeoSpatialTools.distance\_metrics.}}\sphinxbfcode{\sphinxupquote{bearing}}}
-{\sphinxparam{\DUrole{n}{lon0}}\sphinxparamcomma \sphinxparam{\DUrole{n}{lat0}}\sphinxparamcomma \sphinxparam{\DUrole{n}{lon1}}\sphinxparamcomma \sphinxparam{\DUrole{n}{lat1}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Compute the bearing of a track from (lon0, lat0) to (lon1, lat1).
-
-\sphinxAtStartPar
-Duplicated from geo\sphinxhyphen{}py
-\begin{quote}\begin{description}
-\sphinxlineitem{Parameters}\begin{itemize}
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lon0}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}\sphinxstyleliteralemphasis{\sphinxupquote{,}}) \textendash{} Longitude of start point
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lat0}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}\sphinxstyleliteralemphasis{\sphinxupquote{,}}) \textendash{} Latitude of start point
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lon1}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}\sphinxstyleliteralemphasis{\sphinxupquote{,}}) \textendash{} Longitude of target point
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lat1}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}\sphinxstyleliteralemphasis{\sphinxupquote{,}}) \textendash{} Latitude of target point
-
-\end{itemize}
-
-\sphinxlineitem{Returns}
-\sphinxAtStartPar
-\sphinxstylestrong{bearing} \textendash{} The bearing from point (lon0, lat0) to point (lon1, lat1) in degrees.
-
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-float
-
-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-\index{destination() (in module GeoSpatialTools.distance\_metrics)@\spxentry{destination()}\spxextra{in module GeoSpatialTools.distance\_metrics}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.distance_metrics.destination}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxcode{\sphinxupquote{GeoSpatialTools.distance\_metrics.}}\sphinxbfcode{\sphinxupquote{destination}}}
-{\sphinxparam{\DUrole{n}{lon}}\sphinxparamcomma \sphinxparam{\DUrole{n}{lat}}\sphinxparamcomma \sphinxparam{\DUrole{n}{bearing}}\sphinxparamcomma \sphinxparam{\DUrole{n}{distance}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Compute destination of a great circle path.
-
-\sphinxAtStartPar
-Compute the destination of a track started from ‘lon’, ‘lat’, with
-‘bearing’. Distance is in units of km.
-
-\sphinxAtStartPar
-Duplicated from geo\sphinxhyphen{}py
-\begin{quote}\begin{description}
-\sphinxlineitem{Parameters}\begin{itemize}
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lon}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Longitude of initial position
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lat}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Latitude of initial position
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{bearing}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Direction of track
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{distance}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Distance to travel
-
-\end{itemize}
-
-\sphinxlineitem{Returns}
-\sphinxAtStartPar
-\sphinxstylestrong{destination} \textendash{} Longitude and Latitude of final position
-
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-tuple{[}float, float{]}
-
-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-\index{gcd\_slc() (in module GeoSpatialTools.distance\_metrics)@\spxentry{gcd\_slc()}\spxextra{in module GeoSpatialTools.distance\_metrics}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.distance_metrics.gcd_slc}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxcode{\sphinxupquote{GeoSpatialTools.distance\_metrics.}}\sphinxbfcode{\sphinxupquote{gcd\_slc}}}
-{\sphinxparam{\DUrole{n}{lon0}}\sphinxparamcomma \sphinxparam{\DUrole{n}{lat0}}\sphinxparamcomma \sphinxparam{\DUrole{n}{lon1}}\sphinxparamcomma \sphinxparam{\DUrole{n}{lat1}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Compute great circle distance on earth surface between two locations.
-\begin{quote}\begin{description}
-\sphinxlineitem{Parameters}\begin{itemize}
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lon0}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Longitude of position 0
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lat0}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Latitude of position 0
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lon1}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Longitude of position 1
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lat1}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Latitude of position 1
-
-\end{itemize}
-
-\sphinxlineitem{Returns}
-\sphinxAtStartPar
-\sphinxstylestrong{dist} \textendash{} Great circle distance between position 0 and position 1.
-
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-float
-
-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-\index{haversine() (in module GeoSpatialTools.distance\_metrics)@\spxentry{haversine()}\spxextra{in module GeoSpatialTools.distance\_metrics}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.distance_metrics.haversine}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxcode{\sphinxupquote{GeoSpatialTools.distance\_metrics.}}\sphinxbfcode{\sphinxupquote{haversine}}}
-{\sphinxparam{\DUrole{n}{lon0}}\sphinxparamcomma \sphinxparam{\DUrole{n}{lat0}}\sphinxparamcomma \sphinxparam{\DUrole{n}{lon1}}\sphinxparamcomma \sphinxparam{\DUrole{n}{lat1}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Compute Haversine distance between two points.
-\begin{quote}\begin{description}
-\sphinxlineitem{Parameters}\begin{itemize}
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lon0}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Longitude of position 0
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lat0}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Latitude of position 0
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lon1}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Longitude of position 1
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lat1}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Latitude of position 1
-
-\end{itemize}
-
-\sphinxlineitem{Returns}
-\sphinxAtStartPar
-\sphinxstylestrong{dist} \textendash{} Haversine distance between position 0 and position 1.
-
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-float
-
-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-\index{midpoint() (in module GeoSpatialTools.distance\_metrics)@\spxentry{midpoint()}\spxextra{in module GeoSpatialTools.distance\_metrics}}
-
-\begin{fulllineitems}
-\phantomsection\label{\detokenize{users_guide:GeoSpatialTools.distance_metrics.midpoint}}
-\pysigstartsignatures
-\pysiglinewithargsret
-{\sphinxcode{\sphinxupquote{GeoSpatialTools.distance\_metrics.}}\sphinxbfcode{\sphinxupquote{midpoint}}}
-{\sphinxparam{\DUrole{n}{lon0}}\sphinxparamcomma \sphinxparam{\DUrole{n}{lat0}}\sphinxparamcomma \sphinxparam{\DUrole{n}{lon1}}\sphinxparamcomma \sphinxparam{\DUrole{n}{lat1}}}
-{}
-\pysigstopsignatures
-\sphinxAtStartPar
-Compute the midpoint of a great circle track
-\begin{quote}\begin{description}
-\sphinxlineitem{Parameters}\begin{itemize}
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lon0}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Longitude of position 0
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lat0}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Latitude of position 0
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lon1}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Longitude of position 1
-
-\item {}
-\sphinxAtStartPar
-\sphinxstyleliteralstrong{\sphinxupquote{lat1}} (\sphinxstyleliteralemphasis{\sphinxupquote{float}}) \textendash{} Latitude of position 1
-
-\end{itemize}
-
-\sphinxlineitem{Returns}
-\sphinxAtStartPar
-Positions of midpoint between position 0 and position 1
-
-\sphinxlineitem{Return type}
-\sphinxAtStartPar
-lon, lat
-
-\end{description}\end{quote}
-
-\end{fulllineitems}
-
-
-
-\renewcommand{\indexname}{Python Module Index}
-\begin{sphinxtheindex}
-\let\bigletter\sphinxstyleindexlettergroup
-\bigletter{g}
-\item\relax\sphinxstyleindexentry{GeoSpatialTools.distance\_metrics}\sphinxstyleindexpageref{users_guide:\detokenize{module-GeoSpatialTools.distance_metrics}}
-\item\relax\sphinxstyleindexentry{GeoSpatialTools.great\_circle}\sphinxstyleindexpageref{users_guide:\detokenize{module-GeoSpatialTools.great_circle}}
-\item\relax\sphinxstyleindexentry{GeoSpatialTools.kdtree}\sphinxstyleindexpageref{users_guide:\detokenize{module-GeoSpatialTools.kdtree}}
-\item\relax\sphinxstyleindexentry{GeoSpatialTools.neighbours}\sphinxstyleindexpageref{users_guide:\detokenize{module-GeoSpatialTools.neighbours}}
-\item\relax\sphinxstyleindexentry{GeoSpatialTools.octtree}\sphinxstyleindexpageref{users_guide:\detokenize{module-GeoSpatialTools.octtree}}
-\item\relax\sphinxstyleindexentry{GeoSpatialTools.quadtree}\sphinxstyleindexpageref{users_guide:\detokenize{module-GeoSpatialTools.quadtree}}
-\end{sphinxtheindex}
-
-\renewcommand{\indexname}{Index}
-\printindex
-\end{document}
\ No newline at end of file
diff --git a/docs/index.rst b/docs/index.rst
index b373b14a64ef5d2c7a393a8aba54cfa41a301d25..5a77191902835fc2774c56665376f555bf2b215d 100644
--- a/docs/index.rst
+++ b/docs/index.rst
@@ -9,8 +9,8 @@ Welcome to GeoSpatialTool's documentation!
.. toctree::
:maxdepth: 4
:caption: Contents:
-
- introduction
+
+ introduction
getting_started
authors
users_guide
diff --git a/notebooks/kdtree.ipynb b/notebooks/kdtree.ipynb
index 3e4b86a2e7abcbdfb00cdd54d4c5298a79336dba..55ab2498c7d7c63a6bb049ca5961fadc6c2e3e06 100644
--- a/notebooks/kdtree.ipynb
+++ b/notebooks/kdtree.ipynb
@@ -1,5 +1,17 @@
{
"cells": [
+ {
+ "cell_type": "markdown",
+ "id": "f7143f08-1d06-4e94-bbf6-ef35ddd11556",
+ "metadata": {},
+ "source": [
+ "# KDTree\n",
+ "\n",
+ "Testing the time to look-up nearby records with the `KDTree` implementation. Note that this implementation is actually a `2DTree` since it can only compute a valid distance comparison between longitude and latitude positions.\n",
+ "\n",
+ "The `KDTree` object is used for finding the closest neighbour to a position, in this implementation we use the Haversine distance to compare positions."
+ ]
+ },
{
"cell_type": "code",
"execution_count": 1,
@@ -8,11 +20,10 @@
"outputs": [],
"source": [
"import os\n",
- "import gzip\n",
+ "\n",
"os.environ[\"POLARS_MAX_THREADS\"] = \"4\"\n",
"\n",
- "from datetime import datetime, timedelta\n",
- "from random import choice\n",
+ "from datetime import datetime\n",
"from string import ascii_letters, digits\n",
"import random\n",
"import inspect\n",
@@ -20,7 +31,17 @@
"import polars as pl\n",
"import numpy as np\n",
"\n",
- "from GeoSpatialTools import Record, haversine, KDTree"
+ "from GeoSpatialTools import Record, KDTree"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "ec6c6e7f-8eee-47ea-a5e9-12537bb3412d",
+ "metadata": {},
+ "source": [
+ "## Set-up functions\n",
+ "\n",
+ "Used for generating data, or for comparisons by doing brute-force approach."
]
},
{
@@ -31,6 +52,7 @@
"outputs": [],
"source": [
"def randnum() -> float:\n",
+ " \"\"\"Get a random number between -1 and 1\"\"\"\n",
" return 2 * (np.random.rand() - 0.5)"
]
},
@@ -42,6 +64,7 @@
"outputs": [],
"source": [
"def generate_uid(n: int) -> str:\n",
+ " \"\"\"Generates a pseudo uid by randomly selecting from characters\"\"\"\n",
" chars = ascii_letters + digits\n",
" return \"\".join(random.choice(chars) for _ in range(n))"
]
@@ -49,6 +72,179 @@
{
"cell_type": "code",
"execution_count": 4,
+ "id": "9e647ecd-abdc-46a0-8261-aa081fda2e1d",
+ "metadata": {
+ "jupyter": {
+ "source_hidden": true
+ },
+ "scrolled": true
+ },
+ "outputs": [],
+ "source": [
+ "def check_cols(\n",
+ " df: pl.DataFrame | pl.LazyFrame,\n",
+ " cols: list[str],\n",
+ " var_name: str = \"dataframe\",\n",
+ ") -> None:\n",
+ " \"\"\"\n",
+ " Check that a dataframe contains a list of columns. Raises an error if not.\n",
+ "\n",
+ " Parameters\n",
+ " ----------\n",
+ " df : polars Frame\n",
+ " Dataframe to check\n",
+ " cols : list[str]\n",
+ " Required columns\n",
+ " var_name : str\n",
+ " Name of the Frame - used for displaying in any error.\n",
+ " \"\"\"\n",
+ " calling_func = inspect.stack()[1][3]\n",
+ " if isinstance(df, pl.DataFrame):\n",
+ " have_cols = df.columns\n",
+ " elif isinstance(df, pl.LazyFrame):\n",
+ " have_cols = df.collect_schema().names()\n",
+ " else:\n",
+ " raise TypeError(\"Input Frame is not a polars Frame\")\n",
+ "\n",
+ " cols_in_frame = intersect(cols, have_cols)\n",
+ " missing = [c for c in cols if c not in cols_in_frame]\n",
+ "\n",
+ " if len(missing) > 0:\n",
+ " err_str = f\"({calling_func}) - {var_name} missing required columns. \"\n",
+ " err_str += f\"Require: {', '.join(cols)}. \"\n",
+ " err_str += f\"Missing: {', '.join(missing)}.\"\n",
+ " raise ValueError(err_str)\n",
+ "\n",
+ " return\n",
+ "\n",
+ "\n",
+ "def haversine_df(\n",
+ " df: pl.DataFrame | pl.LazyFrame,\n",
+ " lon: float,\n",
+ " lat: float,\n",
+ " R: float = 6371,\n",
+ " lon_col: str = \"lon\",\n",
+ " lat_col: str = \"lat\",\n",
+ ") -> pl.DataFrame | pl.LazyFrame:\n",
+ " \"\"\"\n",
+ " Compute haversine distance on earth surface between lon-lat positions\n",
+ " in a polars DataFrame and a lon-lat position.\n",
+ "\n",
+ " Parameters\n",
+ " ----------\n",
+ " df : polars.DataFrame\n",
+ " The data, containing required columns:\n",
+ " * lon_col\n",
+ " * lat_col\n",
+ " * date_var\n",
+ " lon : float\n",
+ " The longitude of the position.\n",
+ " lat : float\n",
+ " The latitude of the position.\n",
+ " R : float\n",
+ " Radius of earth in km\n",
+ " lon_col : str\n",
+ " Name of the longitude column\n",
+ " lat_col : str\n",
+ " Name of the latitude column\n",
+ "\n",
+ " Returns\n",
+ " -------\n",
+ " polars.DataFrame\n",
+ " With additional column specifying distances between consecutive points\n",
+ " in the same units as 'R'. With colname defined by 'out_colname'.\n",
+ " \"\"\"\n",
+ " required_cols = [lon_col, lat_col]\n",
+ "\n",
+ " check_cols(df, required_cols, \"df\")\n",
+ " return (\n",
+ " df.with_columns(\n",
+ " [\n",
+ " pl.col(lat_col).radians().alias(\"_lat0\"),\n",
+ " pl.lit(lat).radians().alias(\"_lat1\"),\n",
+ " (pl.col(lon_col) - lon).radians().alias(\"_dlon\"),\n",
+ " (pl.col(lat_col) - lat).radians().alias(\"_dlat\"),\n",
+ " ]\n",
+ " )\n",
+ " .with_columns(\n",
+ " (\n",
+ " (pl.col(\"_dlat\") / 2).sin().pow(2)\n",
+ " + pl.col(\"_lat0\").cos()\n",
+ " * pl.col(\"_lat1\").cos()\n",
+ " * (pl.col(\"_dlon\") / 2).sin().pow(2)\n",
+ " ).alias(\"_a\")\n",
+ " )\n",
+ " .with_columns(\n",
+ " (2 * R * (pl.col(\"_a\").sqrt().arcsin())).round(2).alias(\"_dist\")\n",
+ " )\n",
+ " .drop([\"_lat0\", \"_lat1\", \"_dlon\", \"_dlat\", \"_a\"])\n",
+ " )\n",
+ "\n",
+ "\n",
+ "def intersect(a, b) -> set:\n",
+ " \"\"\"Intersection of a and b, items in both a and b\"\"\"\n",
+ " return set(a) & set(b)\n",
+ "\n",
+ "\n",
+ "def nearest_ship(\n",
+ " lon: float,\n",
+ " lat: float,\n",
+ " df: pl.DataFrame,\n",
+ " lon_col: str = \"lon\",\n",
+ " lat_col: str = \"lat\",\n",
+ ") -> pl.DataFrame:\n",
+ " \"\"\"\n",
+ " Find the observation nearest to a position in space.\n",
+ "\n",
+ " Get a frame with only the records that is closest to the input point.\n",
+ "\n",
+ " Parameters\n",
+ " ----------\n",
+ " lon : float\n",
+ " The longitude of the position.\n",
+ " lat : float\n",
+ " The latitude of the position.\n",
+ " df : polars.DataFrame\n",
+ " The pool of records to search. Can be pre-filtered and filter_datetime\n",
+ " set to False.\n",
+ " lon_col : str\n",
+ " Name of the longitude column in the pool DataFrame\n",
+ " lat_col : str\n",
+ " Name of the latitude column in the pool DataFrame\n",
+ "\n",
+ " Returns\n",
+ " -------\n",
+ " polars.DataFrame\n",
+ " Containing only records from the pool within max_dist of the input\n",
+ " point, optionally at the same datetime if filter_datetime is True.\n",
+ " \"\"\"\n",
+ " required_cols = [lon_col, lat_col]\n",
+ " check_cols(df, required_cols, \"df\")\n",
+ "\n",
+ " return (\n",
+ " df.pipe(\n",
+ " haversine_df,\n",
+ " lon=lon,\n",
+ " lat=lat,\n",
+ " lon_col=lon_col,\n",
+ " lat_col=lat_col,\n",
+ " )\n",
+ " .filter(pl.col(\"_dist\").eq(pl.col(\"_dist\").min()))\n",
+ " .drop([\"_dist\"])\n",
+ " )"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "287bdc1d-1ecf-4c59-af95-d2dc639c6894",
+ "metadata": {},
+ "source": [
+ "## Initialise random data"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 5,
"id": "c60b30de-f864-477a-a09a-5f1caa4d9b9a",
"metadata": {},
"outputs": [
@@ -58,17 +254,17 @@
"text": [
"(16000, 2)\n",
"shape: (5, 2)\n",
- "┌──────┬─────â”\n",
- "│ lon ┆ lat │\n",
- "│ --- ┆ --- │\n",
- "│ i64 ┆ i64 │\n",
- "â•žâ•â•â•â•â•â•â•ªâ•â•â•â•â•â•¡\n",
- "│ 127 ┆ 21 │\n",
- "│ -148 ┆ 36 │\n",
- "│ -46 ┆ -15 │\n",
- "│ 104 ┆ 89 │\n",
- "│ -57 ┆ -31 │\n",
- "└──────┴─────┘\n"
+ "┌─────┬─────â”\n",
+ "│ lon ┆ lat │\n",
+ "│ --- ┆ --- │\n",
+ "│ i64 ┆ i64 │\n",
+ "â•žâ•â•â•â•â•â•ªâ•â•â•â•â•â•¡\n",
+ "│ -26 ┆ -42 │\n",
+ "│ 109 ┆ -33 │\n",
+ "│ -87 ┆ -18 │\n",
+ "│ -94 ┆ -81 │\n",
+ "│ -94 ┆ 0 │\n",
+ "└─────┴─────┘\n"
]
}
],
@@ -76,7 +272,12 @@
"N = 16_000\n",
"lons = pl.int_range(-180, 180, eager=True)\n",
"lats = pl.int_range(-90, 90, eager=True)\n",
- "dates = pl.datetime_range(datetime(1900, 1, 1, 0), datetime(1900, 1, 31, 23), interval=\"1h\", eager=True)\n",
+ "dates = pl.datetime_range(\n",
+ " datetime(1900, 1, 1, 0),\n",
+ " datetime(1900, 1, 31, 23),\n",
+ " interval=\"1h\",\n",
+ " eager=True,\n",
+ ")\n",
"\n",
"lons_use = lons.sample(N, with_replacement=True).alias(\"lon\")\n",
"lats_use = lats.sample(N, with_replacement=True).alias(\"lat\")\n",
@@ -90,7 +291,7 @@
},
{
"cell_type": "code",
- "execution_count": 5,
+ "execution_count": 6,
"id": "875f2a67-49fe-476f-add1-b1d76c6cd8f9",
"metadata": {},
"outputs": [],
@@ -98,9 +299,19 @@
"records = [Record(**r) for r in df.rows(named=True)]"
]
},
+ {
+ "cell_type": "markdown",
+ "id": "bd83330b-ef2c-478e-9a7b-820454d198bb",
+ "metadata": {},
+ "source": [
+ "## Initialise the `KDTree`\n",
+ "\n",
+ "There is an overhead to constructing a `KDTree` object, so performance improvement is only for multiple comparisons."
+ ]
+ },
{
"cell_type": "code",
- "execution_count": 6,
+ "execution_count": 7,
"id": "1e883e5a-5086-4c29-aff2-d308874eae16",
"metadata": {},
"outputs": [
@@ -108,8 +319,8 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "CPU times: user 151 ms, sys: 360 ms, total: 511 ms\n",
- "Wall time: 57.3 ms\n"
+ "CPU times: user 35 ms, sys: 1.5 ms, total: 36.5 ms\n",
+ "Wall time: 32.1 ms\n"
]
}
],
@@ -118,9 +329,30 @@
"kt = KDTree(records)"
]
},
+ {
+ "cell_type": "markdown",
+ "id": "0a37ef06-2691-4e01-96a9-1c1ecd582599",
+ "metadata": {},
+ "source": [
+ "## Compare with brute force approach"
+ ]
+ },
{
"cell_type": "code",
- "execution_count": 7,
+ "execution_count": 8,
+ "id": "365bbf30-7a93-438d-92b2-a3471f1e9249",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "test_record = Record(\n",
+ " random.choice(range(-179, 180)) + randnum(),\n",
+ " random.choice(range(-89, 90)) + randnum(),\n",
+ ")"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 9,
"id": "69022ad1-5ec8-4a09-836c-273ef452451f",
"metadata": {},
"outputs": [
@@ -128,19 +360,18 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "203 μs ± 4.56 μs per loop (mean ± std. dev. of 7 runs, 10,000 loops each)\n"
+ "101 μs ± 3.52 μs per loop (mean ± std. dev. of 7 runs, 10,000 loops each)\n"
]
}
],
"source": [
"%%timeit\n",
- "test_record = Record(random.choice(range(-179, 180)) + randnum(), random.choice(range(-89, 90)) + randnum())\n",
"kt.query(test_record)"
]
},
{
"cell_type": "code",
- "execution_count": 8,
+ "execution_count": 10,
"id": "28031966-c7d0-4201-a467-37590118e851",
"metadata": {},
"outputs": [
@@ -148,19 +379,45 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "8.87 ms ± 188 μs per loop (mean ± std. dev. of 7 runs, 100 loops each)\n"
+ "8.17 ms ± 38.6 μs per loop (mean ± std. dev. of 7 runs, 100 loops each)\n"
]
}
],
"source": [
"%%timeit\n",
- "test_record = Record(random.choice(range(-179, 180)) + randnum(), random.choice(range(-89, 90)) + randnum())\n",
"np.argmin([test_record.distance(p) for p in records])"
]
},
{
"cell_type": "code",
- "execution_count": 9,
+ "execution_count": 11,
+ "id": "09e0f923-ca49-47bf-8643-e0b3a6d0467c",
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "8.22 ms ± 95.3 μs per loop (mean ± std. dev. of 7 runs, 100 loops each)\n"
+ ]
+ }
+ ],
+ "source": [
+ "%%timeit\n",
+ "nearest_ship(lon=test_record.lon, lat=test_record.lat, df=df)"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "f0359950-942d-45ea-8676-b22c8ce9e296",
+ "metadata": {},
+ "source": [
+ "## Verify that results are correct"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 12,
"id": "0d10b2ba-57b2-475c-9d01-135363423990",
"metadata": {},
"outputs": [
@@ -168,8 +425,8 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "CPU times: user 17.4 s, sys: 147 ms, total: 17.6 s\n",
- "Wall time: 17.6 s\n"
+ "CPU times: user 16.3 s, sys: 74.7 ms, total: 16.4 s\n",
+ "Wall time: 16.4 s\n"
]
}
],
@@ -177,18 +434,28 @@
"%%time\n",
"n_samples = 1000\n",
"tol = 1e-8\n",
- "test_records = [Record(random.choice(range(-179, 180)) + randnum(), random.choice(range(-89, 90)) + randnum()) for _ in range(n_samples)]\n",
+ "test_records = [\n",
+ " Record(\n",
+ " random.choice(range(-179, 180)) + randnum(),\n",
+ " random.choice(range(-89, 90)) + randnum(),\n",
+ " )\n",
+ " for _ in range(n_samples)\n",
+ "]\n",
"kd_res = [kt.query(r) for r in test_records]\n",
"kd_recs = [_[0][0] for _ in kd_res]\n",
"kd_dists = [_[1] for _ in kd_res]\n",
- "tr_recs = [records[np.argmin([r.distance(p) for p in records])] for r in test_records]\n",
+ "tr_recs = [\n",
+ " records[np.argmin([r.distance(p) for p in records])] for r in test_records\n",
+ "]\n",
"tr_dists = [min([r.distance(p) for p in records]) for r in test_records]\n",
- "assert all([abs(k - t) < tol for k, t in zip(kd_dists, tr_dists)]), \"NOT MATCHING?\""
+ "\n",
+ "if not all([abs(k - t) < tol for k, t in zip(kd_dists, tr_dists)]):\n",
+ " raise ValueError(\"NOT MATCHING?\")"
]
},
{
"cell_type": "code",
- "execution_count": 10,
+ "execution_count": 13,
"id": "a6aa6926-7fd5-4fff-bd20-7bc0305b948d",
"metadata": {},
"outputs": [
@@ -214,7 +481,7 @@
"└──────────┴──────────┴─────────┴────────┴────────┴─────────┴────────┴────────┘"
]
},
- "execution_count": 10,
+ "execution_count": 13,
"metadata": {},
"output_type": "execute_result"
}
@@ -229,23 +496,25 @@
"tr_lons = [r.lon for r in tr_recs]\n",
"tr_lats = [r.lat for r in tr_recs]\n",
"\n",
- "df = pl.DataFrame({\n",
- " \"test_lon\": test_lons, \n",
- " \"test_lat\": test_lats,\n",
- " \"kd_dist\": kd_dists,\n",
- " \"kd_lon\": kd_lons,\n",
- " \"kd_lat\": kd_lats,\n",
- " \"tr_dist\": tr_dists,\n",
- " \"tr_lon\": tr_lons,\n",
- " \"tr_lat\": tr_lats, \n",
- "}).filter((pl.col(\"kd_dist\") - pl.col(\"tr_dist\")).abs().ge(tol))\n",
+ "df = pl.DataFrame(\n",
+ " {\n",
+ " \"test_lon\": test_lons,\n",
+ " \"test_lat\": test_lats,\n",
+ " \"kd_dist\": kd_dists,\n",
+ " \"kd_lon\": kd_lons,\n",
+ " \"kd_lat\": kd_lats,\n",
+ " \"tr_dist\": tr_dists,\n",
+ " \"tr_lon\": tr_lons,\n",
+ " \"tr_lat\": tr_lats,\n",
+ " }\n",
+ ").filter((pl.col(\"kd_dist\") - pl.col(\"tr_dist\")).abs().ge(tol))\n",
"df"
]
}
],
"metadata": {
"kernelspec": {
- "display_name": "GeoSpatialTools",
+ "display_name": "geospatialtools",
"language": "python",
"name": "geospatialtools"
},
@@ -259,7 +528,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
- "version": "3.12.7"
+ "version": "3.11.11"
}
},
"nbformat": 4,
diff --git a/notebooks/octtree.ipynb b/notebooks/octtree.ipynb
index 1259795099391eeda11058b5932dd0c5d975f8f6..872b981e900e9ad47a6b4a66dc860e18e78f01e9 100644
--- a/notebooks/octtree.ipynb
+++ b/notebooks/octtree.ipynb
@@ -7,7 +7,9 @@
"source": [
"## OctTree!\n",
"\n",
- "Testing the time to look-up nearby records with the PyCOADS OctTree implementation."
+ "Testing the time to look-up nearby records with the `OctTree` implementation.\n",
+ "\n",
+ "The `OctTree` is used to find records within a spatio-temporal range of a given point, or within a box defined by lon, lat, & time bounds."
]
},
{
@@ -18,11 +20,10 @@
"outputs": [],
"source": [
"import os\n",
- "import gzip\n",
+ "\n",
"os.environ[\"POLARS_MAX_THREADS\"] = \"4\"\n",
"\n",
"from datetime import datetime, timedelta\n",
- "from random import choice\n",
"from string import ascii_letters, digits\n",
"import random\n",
"import inspect\n",
@@ -30,289 +31,26 @@
"import polars as pl\n",
"import numpy as np\n",
"\n",
- "from GeoSpatialTools.octtree import OctTree, SpaceTimeRecord as Record, SpaceTimeRectangle as Rectangle"
- ]
- },
- {
- "cell_type": "raw",
- "id": "99295bad-0db3-444b-8d38-acc7875cc0f0",
- "metadata": {},
- "source": [
- "## Generate Data\n",
- "\n",
- "16,000 rows of data"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 2,
- "id": "d8f1e5e1-513c-4bdf-a9f9-cef9562a7cb7",
- "metadata": {},
- "outputs": [],
- "source": [
- "def generate_uid(n: int) -> str:\n",
- " chars = ascii_letters + digits\n",
- " return \"\".join(random.choice(chars) for _ in range(n))"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 3,
- "id": "986d9cc5-e610-449a-9ee7-e281b7558ca9",
- "metadata": {},
- "outputs": [],
- "source": [
- "N = 16_000\n",
- "lons = pl.int_range(-180, 180, eager=True)\n",
- "lats = pl.int_range(-90, 90, eager=True)\n",
- "dates = pl.datetime_range(datetime(1900, 1, 1, 0), datetime(1900, 1, 31, 23), interval=\"1h\", eager=True)\n",
- "\n",
- "lons_use = lons.sample(N, with_replacement=True).alias(\"lon\")\n",
- "lats_use = lats.sample(N, with_replacement=True).alias(\"lat\")\n",
- "dates_use = dates.sample(N, with_replacement=True).alias(\"datetime\")\n",
- "uids = pl.Series(\"uid\", [generate_uid(8) for _ in range(N)])\n",
- "\n",
- "df = pl.DataFrame([lons_use, lats_use, dates_use, uids]).unique()"
- ]
- },
- {
- "cell_type": "markdown",
- "id": "237096f1-093e-49f0-9a9a-2bec5231726f",
- "metadata": {},
- "source": [
- "## Add extra rows\n",
- "\n",
- "For testing larger datasets. Uncomment to use."
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 4,
- "id": "0b8fd425-8a90-4f76-91b7-60df48aa98e4",
- "metadata": {},
- "outputs": [],
- "source": [
- "# _df = df.clone()\n",
- "# for i in range(100):\n",
- "# df2 = pl.DataFrame([\n",
- "# _df[\"lon\"].shuffle(),\n",
- "# _df[\"lat\"].shuffle(),\n",
- "# _df[\"datetime\"].shuffle(),\n",
- "# _df[\"uid\"].shuffle(),\n",
- "# ]).with_columns(pl.concat_str([pl.col(\"uid\"), pl.lit(f\"{i:03d}\")]).alias(\"uid\"))\n",
- "# df = df.vstack(df2)\n",
- "# df.shape\n",
- "# df"
- ]
- },
- {
- "cell_type": "markdown",
- "id": "c7bd16e0-96a6-426b-b00a-7c3b8a2aaddd",
- "metadata": {},
- "source": [
- "## Intialise the OctTree Object"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 5,
- "id": "af06a976-ff52-49e0-a886-91bcbe540ffe",
- "metadata": {},
- "outputs": [],
- "source": [
- "otree = OctTree(Rectangle(-180, 180, -90, 90, datetime(1900, 1, 1, 0), datetime(1900, 1, 31, 23)), capacity = 10, max_depth = 25)"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 6,
- "id": "2ba99b37-787c-4862-8075-a7596208c60e",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "CPU times: user 106 ms, sys: 3.98 ms, total: 110 ms\n",
- "Wall time: 109 ms\n"
- ]
- }
- ],
- "source": [
- "%%time\n",
- "for r in df.rows():\n",
- " otree.insert(Record(*r))"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 7,
- "id": "59d38446-f7d2-4eec-bba3-c39bd7279623",
- "metadata": {
- "scrolled": true
- },
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "OctTree:\n",
- "- boundary: SpaceTimeRectangle(west=-180, east=180, south=-90, north=90, start=datetime.datetime(1900, 1, 1, 0, 0), end=datetime.datetime(1900, 1, 31, 23, 0))\n",
- "- capacity: 10\n",
- "- depth: 0\n",
- "- max_depth: 25\n",
- "- contents:\n",
- "- number of elements: 10\n",
- " * SpaceTimeRecord(x = 92, y = 15, datetime = 1900-01-17 08:00:00, uid = HRF401hH)\n",
- " * SpaceTimeRecord(x = -35, y = 37, datetime = 1900-01-04 08:00:00, uid = CXZaSOdh)\n",
- " * SpaceTimeRecord(x = 84, y = -7, datetime = 1900-01-07 16:00:00, uid = 2aEjxGwG)\n",
- " * SpaceTimeRecord(x = 68, y = 73, datetime = 1900-01-18 17:00:00, uid = Ah7lanWB)\n",
- " * SpaceTimeRecord(x = -179, y = 40, datetime = 1900-01-01 11:00:00, uid = HGxSJzf4)\n",
- " * SpaceTimeRecord(x = -73, y = 23, datetime = 1900-01-09 12:00:00, uid = qHQ8opO9)\n",
- " * SpaceTimeRecord(x = 117, y = -23, datetime = 1900-01-31 06:00:00, uid = ctvs56Fq)\n",
- " * SpaceTimeRecord(x = 109, y = 55, datetime = 1900-01-13 14:00:00, uid = C2xXIglD)\n",
- " * SpaceTimeRecord(x = 104, y = -10, datetime = 1900-01-06 16:00:00, uid = WEpQKIOV)\n",
- " * SpaceTimeRecord(x = 45, y = -71, datetime = 1900-01-29 00:00:00, uid = 7r1UeXRi)\n",
- "- with children:\n",
- " OctTree:\n",
- " - boundary: SpaceTimeRectangle(west=-180, east=0.0, south=0.0, north=90, start=datetime.datetime(1900, 1, 1, 0, 0), end=datetime.datetime(1900, 1, 16, 11, 30))\n",
- " - capacity: 10\n",
- " - depth: 1\n",
- " - max_depth: 25\n",
- " - contents:\n",
- " - number of elements: 10\n",
- " * SpaceTimeRecord(x = -84, y = 38, datetime = 1900-01-15 10:00:00, uid = 63mpq3Kx)\n",
- " * SpaceTimeRecord(x = -78, y = 60, datetime = 1900-01-10 01:00:00, uid = vZ8HLu5t)\n",
- " * SpaceTimeRecord(x = -89, y = 24, datetime = 1900-01-12 17:00:00, uid = gn2o9tYQ)\n",
- " * SpaceTimeRecord(x = -149, y = 7, datetime = 1900-01-08 11:00:00, uid = 2ODnGJO6)\n",
- " * SpaceTimeRecord(x = -37, y = 54, datetime = 1900-01-12 13:00:00, uid = 11cApOwm)\n",
- " * SpaceTimeRecord(x = -34, y = 88, datetime = 1900-01-03 05:00:00, uid = 8SN6zPWh)\n",
- " * SpaceTimeRecord(x = -36, y = 13, datetime = 1900-01-14 13:00:00, uid = ijfjmp8E)\n",
- " * SpaceTimeRecord(x = -168, y = 62, datetime = 1900-01-03 09:00:00, uid = Cc4m1azR)\n",
- " * SpaceTimeRecord(x = -76, y = 67, datetime = 1900-01-06 04:00:00, uid = 4WeWpZUz)\n",
- " * SpaceTimeRecord(x = -156, y = 39, datetime = 1900-01-13 10:00:00, uid = dZXAMaXq)\n",
- " - with children:\n",
- " OctTree:\n",
- " - boundary: SpaceTimeRectangle(west=-180, east=-90.0, south=45.0, north=90, start=datetime.datetime(1900, 1, 1, 0, 0), end=datetime.datetime(1900, 1, 8, 17, 45))\n",
- " - capacity: 10\n",
- " - depth: 2\n",
- " - max_depth: 25\n",
- " - contents:\n",
- " - number of elements: 10\n",
- " * SpaceTimeRecord(x = -141, y = 79, datetime = 1900-01-03 05:00:00, uid = mN1Mg7Vn)\n",
- " * SpaceTimeRecord(x = -172, y = 80, datetime = 1900-01-01 14:00:00, uid = NBBZ3bCW)\n",
- " * SpaceTimeRecord(x = -93, y = 53, datetime = 1900-01-06 07:00:00, uid = jX8HZPJT)\n",
- " * SpaceTimeRecord(x = -168, y = 82, datetime = 1900-01-03 08:00:00, uid = dlxpN1Ew)\n",
- " * SpaceTimeRecord(x = -111, y = 83, datetime = 1900-01-02 12:00:00, uid = GXLopHH0)\n",
- " * SpaceTimeRecord(x = -178, y = 61, datetime = 1900-01-02 00:00:00, uid = 0ut6CLe5)\n",
- " * SpaceTimeRecord(x = -148, y = 74, datetime = 1900-01-07 23:00:00, uid = xUySW1tx)\n",
- " * SpaceTimeRecord(x = -174, y = 63, datetime = 1900-01-06 22:00:00, uid = 8sI94Lt6)\n",
- " * SpaceTimeRecord(x = -114, y = 84, datetime = 1900-01-05 15:00:00, uid = OoY9mEkQ)\n",
- " * SpaceTimeRecord(x = -102, y = 82, datetime = 1900-01-02 15:00:00, uid = bd4sLang)\n",
- " - with children:\n",
- " OctTree:\n",
- " - boundary: SpaceTimeRectangle(west=-180, east=-135.0, south=67.5, north=90, start=datetime.datetime(1900, 1, 1, 0, 0), end=datetime.datetime(1900, 1, 4, 20, 52, 30))\n",
- " - capacity: 10\n",
- " - depth: 3\n",
- " - max_depth: 25\n",
- " - contents:\n",
- " - number of elements: 10\n",
- " * SpaceTimeRecord(x = -148, y = 79, datetime = 1900-01-03 21:00:00, uid = kNWm70rm)\n",
- " * SpaceTimeRecord(x = -157, y = 80, datetime = 1900-01-03 05:00:00, uid = 471X27tA)\n",
- " * SpaceTimeRecord(x = -152, y = 85, datetime = 1900-01-03 01:00:00, uid = cjTyQn7E)\n",
- " * SpaceTimeRecord(x = -154, y = 88, datetime = 1900-01-03 15:00:00, uid = JTnjCJZN)\n",
- " * SpaceTimeRecord(x = -139, y = 83, datetime = 1900-01-01 21:00:00, uid = kZ28j8I5)\n",
- " * SpaceTimeRecord(x = -161, y = 73, datetime = 1900-01-03 02:00:00, uid = wsHJBLLC)\n",
- " * SpaceTimeRecord(x = -140, y = 71, datetime = 1900-01-02 07:00:00, uid = 4bTg1N2k)\n",
- " * SpaceTimeRecord(x = -141, y = 74, datetime = 1900-01-04 09:00:00, uid = I6M8kuue)\n",
- " * SpaceTimeRecord(x = -144, y = 72, datetime = 1900-01-04 17:00:00, uid = 0fPvYOC9)\n",
- " * SpaceTimeRecord(x = -157, y = 78, datetime = 1900-01-03 16:00:00, uid = yAL3OeaK)\n",
- " - with children:\n",
- " OctTree:\n",
- " - boundary: SpaceTimeRectangle(west=-180, east=-157.5, south=78.75, north=90, start=datetime.datetime(1900, 1, 1, 0, 0), end=datetime.datetime(1900, 1, 2, 22, 26, 15))\n",
- " - capacity: 10\n",
- " - depth: 4\n",
- " - max_depth: 25\n",
- " - contents:\n",
- " - number of elements: 4\n",
- " * SpaceTimeRecord(x = -180, y = 88, datetime = 1900-01-02 12:00:00, uid = CXeAd3y4)\n",
- " * SpaceTimeRecord(x = -180, y = 87, datetime = 1900-01-01 16:00:00, uid = TB2xKFgK)\n",
- " * SpaceTimeRecord(x = -171, y = 79, datetime = 1900-01-02 04:00:00, uid = pIU8qvxT)\n",
- " * SpaceTimeRecord(x = -168, y = 85, datetime = 1900-01-01 22:00:00, uid = 7zL4gz8K)\n",
- " OctTree:\n",
- " - boundary: SpaceTimeRectangle(west=-157.5, east=-135.0, south=78.75, north=90, start=datetime.datetime(1900, 1, 1, 0, 0), end=datetime.datetime(1900, 1, 2, 22, 26, 15))\n",
- " - capacity: 10\n",
- " - depth: 4\n",
- " - max_depth: 25\n",
- " - contents:\n",
- " - number of elements: 2\n",
- " * SpaceTimeRecord(x = -149, y = 82, datetime = 1900-01-01 20:00:00, uid = xTYMs6Xp)\n",
- " * SpaceTimeRecord(x = -154, y = 84, datetime = 1900-01-02 21:00:00, uid = JSEaGBsn)\n",
- " OctTree:\n",
- " - boundary: SpaceTimeRectangle(west=-180, east=-157.5, south=67.5, north=78.75, start=datetime.datetime(1900, 1, 1, 0, 0), end=datetime.datetime(1900, 1, 2, 22, 26, 15))\n",
- " - capacity: 10\n",
- " - depth: 4\n",
- " - max_depth: 25\n",
- " - contents:\n",
- " - number of elements: 3\n",
- " * SpaceTimeRecord(x = -173, y = 75, datetime = 1900-01-01 06:00:00, uid = M4N3amQ3)\n"
- ]
- }
- ],
- "source": [
- "s = str(otree)\n",
- "print(\"\\n\".join(s.split(\"\\n\")[:100]))"
+ "from GeoSpatialTools.octtree import (\n",
+ " OctTree,\n",
+ " SpaceTimeRecord as Record,\n",
+ " SpaceTimeRectangle as Rectangle,\n",
+ ")"
]
},
{
"cell_type": "markdown",
- "id": "6b02c2ea-6566-47c2-97e0-43d8b18e0713",
+ "id": "6b0e8015-b958-4be7-9e63-9e21f081011b",
"metadata": {},
"source": [
- "## Time Execution\n",
+ "## Set-up functions\n",
"\n",
- "Testing the identification of nearby points against the original full search"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 8,
- "id": "094b588c-e938-4838-9719-1defdfff74fa",
- "metadata": {},
- "outputs": [],
- "source": [
- "dts = pl.datetime_range(datetime(1900, 1, 1), datetime(1900, 2, 1), interval=\"1h\", eager=True, closed=\"left\")\n",
- "N = dts.len()\n",
- "lons = 180 - 360 * np.random.rand(N)\n",
- "lats = 90 - 180 * np.random.rand(N)\n",
- "test_df = pl.DataFrame({\"lon\": lons, \"lat\": lats, \"datetime\": dts})\n",
- "test_recs = [Record(*r) for r in test_df.rows()]\n",
- "dt = timedelta(days = 1)\n",
- "dist = 350"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 9,
- "id": "66a48b86-d449-45d2-9837-2b3e07f5563d",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "207 μs ± 6.25 μs per loop (mean ± std. dev. of 7 runs, 1,000 loops each)\n"
- ]
- }
- ],
- "source": [
- "%%timeit\n",
- "otree.nearby_points(random.choice(test_recs), dist=dist, t_dist=dt)"
+ "For comparisons using brute-force approach"
]
},
{
"cell_type": "code",
- "execution_count": 10,
+ "execution_count": 2,
"id": "972d4a16-39fd-4f80-8592-1c5d5cabf5be",
"metadata": {
"jupyter": {
@@ -334,7 +72,7 @@
" df : polars Frame\n",
" Dataframe to check\n",
" cols : list[str]\n",
- " Requried columns\n",
+ " Required columns\n",
" var_name : str\n",
" Name of the Frame - used for displaying in any error.\n",
" \"\"\"\n",
@@ -351,9 +89,8 @@
"\n",
" if len(missing) > 0:\n",
" err_str = f\"({calling_func}) - {var_name} missing required columns. \"\n",
- " err_str += f'Require: {\", \".join(cols)}. '\n",
- " err_str += f'Missing: {\", \".join(missing)}.'\n",
- " logging.error(err_str)\n",
+ " err_str += f\"Require: {', '.join(cols)}. \"\n",
+ " err_str += f\"Missing: {', '.join(missing)}.\"\n",
" raise ValueError(err_str)\n",
"\n",
" return\n",
@@ -361,24 +98,15 @@
"\n",
"def haversine_df(\n",
" df: pl.DataFrame | pl.LazyFrame,\n",
- " date_var: str = \"datetime\",\n",
+ " lon: float,\n",
+ " lat: float,\n",
" R: float = 6371,\n",
- " reverse: bool = False,\n",
- " out_colname: str = \"dist\",\n",
" lon_col: str = \"lon\",\n",
" lat_col: str = \"lat\",\n",
- " lon2_col: str | None = None,\n",
- " lat2_col: str | None = None,\n",
- " sorted: bool = False,\n",
- " rev_prefix: str = \"rev_\",\n",
") -> pl.DataFrame | pl.LazyFrame:\n",
" \"\"\"\n",
- " Compute haversine distance on earth surface between lon-lat positions.\n",
- "\n",
- " If only 'lon_col' and 'lat_col' are specified then this computes the\n",
- " distance between consecutive points. If a second set of positions is\n",
- " included via the optional 'lon2_col' and 'lat2_col' arguments then the\n",
- " distances between the columns are computed.\n",
+ " Compute haversine distance on earth surface between lon-lat positions\n",
+ " in a polars DataFrame and a lon-lat position.\n",
"\n",
" Parameters\n",
" ----------\n",
@@ -387,27 +115,16 @@
" * lon_col\n",
" * lat_col\n",
" * date_var\n",
- " date_var : str\n",
- " Name of the datetime column on which to sort the positions\n",
+ " lon : float\n",
+ " The longitude of the position.\n",
+ " lat : float\n",
+ " The latitude of the position.\n",
" R : float\n",
" Radius of earth in km\n",
- " reverse : bool\n",
- " Compute distances in reverse\n",
- " out_colname : str\n",
- " Name of the output column to store distances. Prefixed with 'rev_' if\n",
- " reverse is True\n",
" lon_col : str\n",
" Name of the longitude column\n",
" lat_col : str\n",
" Name of the latitude column\n",
- " lon2_col : str\n",
- " Name of the 2nd longitude column if present\n",
- " lat2_col : str\n",
- " Name of the 2nd latitude column if present\n",
- " sorted : bool\n",
- " Compute distances assuming that the frame is already sorted\n",
- " rev_prefix : str\n",
- " Prefix to use for colnames if reverse is True\n",
"\n",
" Returns\n",
" -------\n",
@@ -417,61 +134,14 @@
" \"\"\"\n",
" required_cols = [lon_col, lat_col]\n",
"\n",
- " if lon2_col is not None and lat2_col is not None:\n",
- " required_cols += [lon2_col, lat2_col]\n",
- " check_cols(df, required_cols, \"df\")\n",
- " return (\n",
- " df.with_columns(\n",
- " [\n",
- " pl.col(lat_col).radians().alias(\"_lat0\"),\n",
- " pl.col(lat2_col).radians().alias(\"_lat1\"),\n",
- " (pl.col(lon_col) - pl.col(lon2_col))\n",
- " .radians()\n",
- " .alias(\"_dlon\"),\n",
- " (pl.col(lat_col) - pl.col(lat2_col))\n",
- " .radians()\n",
- " .alias(\"_dlat\"),\n",
- " ]\n",
- " )\n",
- " .with_columns(\n",
- " (\n",
- " (pl.col(\"_dlat\") / 2).sin().pow(2)\n",
- " + pl.col(\"_lat0\").cos()\n",
- " * pl.col(\"_lat1\").cos()\n",
- " * (pl.col(\"_dlon\") / 2).sin().pow(2)\n",
- " ).alias(\"_a\")\n",
- " )\n",
- " .with_columns(\n",
- " (2 * R * (pl.col(\"_a\").sqrt().arcsin()))\n",
- " .round(2)\n",
- " .alias(out_colname)\n",
- " )\n",
- " .drop([\"_lat0\", \"_lat1\", \"_dlon\", \"_dlat\", \"_a\"])\n",
- " )\n",
- "\n",
- " if lon2_col is not None or lat2_col is not None:\n",
- " logging.warning(\n",
- " \"(haversine_df) 2nd position incorrectly specified. \"\n",
- " + \"Calculating consecutive distances.\"\n",
- " )\n",
- "\n",
- " required_cols += [date_var]\n",
" check_cols(df, required_cols, \"df\")\n",
- " if reverse:\n",
- " out_colname = rev_prefix + out_colname\n",
- " if not sorted:\n",
- " df = df.sort(date_var, descending=reverse)\n",
" return (\n",
" df.with_columns(\n",
" [\n",
" pl.col(lat_col).radians().alias(\"_lat0\"),\n",
- " pl.col(lat_col).shift(n=-1).radians().alias(\"_lat1\"),\n",
- " (pl.col(lon_col).shift(n=-1) - pl.col(lon_col))\n",
- " .radians()\n",
- " .alias(\"_dlon\"),\n",
- " (pl.col(lat_col).shift(n=-1) - pl.col(lat_col))\n",
- " .radians()\n",
- " .alias(\"_dlat\"),\n",
+ " pl.lit(lat).radians().alias(\"_lat1\"),\n",
+ " (pl.col(lon_col) - lon).radians().alias(\"_dlon\"),\n",
+ " (pl.col(lat_col) - lat).radians().alias(\"_dlat\"),\n",
" ]\n",
" )\n",
" .with_columns(\n",
@@ -483,17 +153,17 @@
" ).alias(\"_a\")\n",
" )\n",
" .with_columns(\n",
- " (2 * R * (pl.col(\"_a\").sqrt().arcsin()))\n",
- " .round(2)\n",
- " .fill_null(strategy=\"forward\")\n",
- " .alias(out_colname)\n",
+ " (2 * R * (pl.col(\"_a\").sqrt().arcsin())).round(2).alias(\"_dist\")\n",
" )\n",
" .drop([\"_lat0\", \"_lat1\", \"_dlon\", \"_dlat\", \"_a\"])\n",
" )\n",
"\n",
+ "\n",
"def intersect(a, b) -> set:\n",
+ " \"\"\"Intersection of a and b, items in both a and b\"\"\"\n",
" return set(a) & set(b)\n",
"\n",
+ "\n",
"def nearby_ships(\n",
" lon: float,\n",
" lat: float,\n",
@@ -573,26 +243,201 @@
" )\n",
"\n",
" return (\n",
- " pool.with_columns(\n",
- " [pl.lit(lon).alias(\"_lon\"), pl.lit(lat).alias(\"_lat\")]\n",
- " )\n",
- " .pipe(\n",
+ " pool.pipe(\n",
" haversine_df,\n",
+ " lon=lon,\n",
+ " lat=lat,\n",
" lon_col=lon_col,\n",
" lat_col=lat_col,\n",
- " out_colname=\"_dist\",\n",
- " lon2_col=\"_lon\",\n",
- " lat2_col=\"_lat\",\n",
" )\n",
" .filter(pl.col(\"_dist\").le(max_dist))\n",
- " .drop([\"_dist\", \"_lon\", \"_lat\"])\n",
- " )\n"
+ " .drop([\"_dist\"])\n",
+ " )"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "08cba819-1ebe-48b3-85c7-3fd7469399f8",
+ "metadata": {},
+ "source": [
+ "## Generate Data\n",
+ "\n",
+ "16,000 rows of data"
]
},
{
"cell_type": "code",
- "execution_count": 11,
- "id": "8b9279ed-6f89-4423-8833-acd0b365eb7b",
+ "execution_count": 3,
+ "id": "d8f1e5e1-513c-4bdf-a9f9-cef9562a7cb7",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "def generate_uid(n: int) -> str:\n",
+ " \"\"\"Generates a pseudo uid by randomly selecting from characters\"\"\"\n",
+ " chars = ascii_letters + digits\n",
+ " return \"\".join(random.choice(chars) for _ in range(n))"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 4,
+ "id": "986d9cc5-e610-449a-9ee7-e281b7558ca9",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "N = 16_000\n",
+ "lons = pl.int_range(-180, 180, eager=True)\n",
+ "lats = pl.int_range(-90, 90, eager=True)\n",
+ "dates = pl.datetime_range(\n",
+ " datetime(1900, 1, 1, 0),\n",
+ " datetime(1900, 1, 31, 23),\n",
+ " interval=\"1h\",\n",
+ " eager=True,\n",
+ ")\n",
+ "\n",
+ "lons_use = lons.sample(N, with_replacement=True).alias(\"lon\")\n",
+ "lats_use = lats.sample(N, with_replacement=True).alias(\"lat\")\n",
+ "dates_use = dates.sample(N, with_replacement=True).alias(\"datetime\")\n",
+ "uids = pl.Series(\"uid\", [generate_uid(8) for _ in range(N)])\n",
+ "\n",
+ "df = pl.DataFrame([lons_use, lats_use, dates_use, uids]).unique()"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "237096f1-093e-49f0-9a9a-2bec5231726f",
+ "metadata": {},
+ "source": [
+ "## Add extra rows\n",
+ "\n",
+ "For testing larger datasets. Uncomment to use."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 5,
+ "id": "0b8fd425-8a90-4f76-91b7-60df48aa98e4",
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/html": [
+ "<div><style>\n",
+ ".dataframe > thead > tr,\n",
+ ".dataframe > tbody > tr {\n",
+ " text-align: right;\n",
+ " white-space: pre-wrap;\n",
+ "}\n",
+ "</style>\n",
+ "<small>shape: (1_616_000, 4)</small><table border=\"1\" class=\"dataframe\"><thead><tr><th>lon</th><th>lat</th><th>datetime</th><th>uid</th></tr><tr><td>i64</td><td>i64</td><td>datetime[μs]</td><td>str</td></tr></thead><tbody><tr><td>-152</td><td>-90</td><td>1900-01-16 16:00:00</td><td>"OIcjzfs5"</td></tr><tr><td>-177</td><td>8</td><td>1900-01-29 01:00:00</td><td>"xt99511W"</td></tr><tr><td>0</td><td>35</td><td>1900-01-17 06:00:00</td><td>"2E2Zp4SU"</td></tr><tr><td>-54</td><td>-75</td><td>1900-01-08 12:00:00</td><td>"wceONvH7"</td></tr><tr><td>50</td><td>83</td><td>1900-01-27 10:00:00</td><td>"nwuthgEW"</td></tr><tr><td>…</td><td>…</td><td>…</td><td>…</td></tr><tr><td>-29</td><td>-89</td><td>1900-01-03 23:00:00</td><td>"q8Ue8Uzx099"</td></tr><tr><td>11</td><td>45</td><td>1900-01-31 05:00:00</td><td>"6wKA4HVs099"</td></tr><tr><td>-172</td><td>51</td><td>1900-01-06 17:00:00</td><td>"MuIp2NeA099"</td></tr><tr><td>33</td><td>70</td><td>1900-01-23 10:00:00</td><td>"7dNMyTOj099"</td></tr><tr><td>124</td><td>2</td><td>1900-01-15 20:00:00</td><td>"CoQtomTB099"</td></tr></tbody></table></div>"
+ ],
+ "text/plain": [
+ "shape: (1_616_000, 4)\n",
+ "┌──────┬─────┬─────────────────────┬─────────────â”\n",
+ "│ lon ┆ lat ┆ datetime ┆ uid │\n",
+ "│ --- ┆ --- ┆ --- ┆ --- │\n",
+ "│ i64 ┆ i64 ┆ datetime[μs] ┆ str │\n",
+ "â•žâ•â•â•â•â•â•â•ªâ•â•â•â•â•â•ªâ•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•ªâ•â•â•â•â•â•â•â•â•â•â•â•â•â•¡\n",
+ "│ -152 ┆ -90 ┆ 1900-01-16 16:00:00 ┆ OIcjzfs5 │\n",
+ "│ -177 ┆ 8 ┆ 1900-01-29 01:00:00 ┆ xt99511W │\n",
+ "│ 0 ┆ 35 ┆ 1900-01-17 06:00:00 ┆ 2E2Zp4SU │\n",
+ "│ -54 ┆ -75 ┆ 1900-01-08 12:00:00 ┆ wceONvH7 │\n",
+ "│ 50 ┆ 83 ┆ 1900-01-27 10:00:00 ┆ nwuthgEW │\n",
+ "│ … ┆ … ┆ … ┆ … │\n",
+ "│ -29 ┆ -89 ┆ 1900-01-03 23:00:00 ┆ q8Ue8Uzx099 │\n",
+ "│ 11 ┆ 45 ┆ 1900-01-31 05:00:00 ┆ 6wKA4HVs099 │\n",
+ "│ -172 ┆ 51 ┆ 1900-01-06 17:00:00 ┆ MuIp2NeA099 │\n",
+ "│ 33 ┆ 70 ┆ 1900-01-23 10:00:00 ┆ 7dNMyTOj099 │\n",
+ "│ 124 ┆ 2 ┆ 1900-01-15 20:00:00 ┆ CoQtomTB099 │\n",
+ "└──────┴─────┴─────────────────────┴─────────────┘"
+ ]
+ },
+ "execution_count": 5,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "_df = df.clone()\n",
+ "for i in range(100):\n",
+ " df2 = pl.DataFrame(\n",
+ " [\n",
+ " _df[\"lon\"].shuffle(),\n",
+ " _df[\"lat\"].shuffle(),\n",
+ " _df[\"datetime\"].shuffle(),\n",
+ " _df[\"uid\"].shuffle(),\n",
+ " ]\n",
+ " ).with_columns(\n",
+ " pl.concat_str([pl.col(\"uid\"), pl.lit(f\"{i:03d}\")]).alias(\"uid\")\n",
+ " )\n",
+ " df = df.vstack(df2)\n",
+ "df.shape\n",
+ "df"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "c7bd16e0-96a6-426b-b00a-7c3b8a2aaddd",
+ "metadata": {},
+ "source": [
+ "## Initialise the OctTree Object\n",
+ "\n",
+ "There is an overhead in constructing the `OctTree` class. The performance benefits appear if multiple neighbourhood searches are performed."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 6,
+ "id": "af06a976-ff52-49e0-a886-91bcbe540ffe",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "bounds = Rectangle(\n",
+ " -180,\n",
+ " 180,\n",
+ " -90,\n",
+ " 90,\n",
+ " datetime(1900, 1, 1, 0),\n",
+ " datetime(1900, 1, 31, 23),\n",
+ ")\n",
+ "otree = OctTree(bounds, capacity=10, max_depth=25)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 7,
+ "id": "2ba99b37-787c-4862-8075-a7596208c60e",
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "CPU times: user 16.3 s, sys: 253 ms, total: 16.6 s\n",
+ "Wall time: 16.6 s\n"
+ ]
+ }
+ ],
+ "source": [
+ "%%time\n",
+ "for r in df.rows():\n",
+ " otree.insert(Record(*r))"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "94be9d8a-02fc-49f2-98c9-0bcf250b1d10",
+ "metadata": {},
+ "source": [
+ "### View the `OctTree`\n",
+ "\n",
+ "It is a nested object, with child `OctTree` objects in each octant of the space-time domain."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 8,
+ "id": "59d38446-f7d2-4eec-bba3-c39bd7279623",
"metadata": {
"scrolled": true
},
@@ -601,47 +446,228 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "5.36 ms ± 164 μs per loop (mean ± std. dev. of 7 runs, 100 loops each)\n"
+ "OctTree:\n",
+ "- boundary: SpaceTimeRectangle(west=-180, east=180, south=-90, north=90, start=datetime.datetime(1900, 1, 1, 0, 0), end=datetime.datetime(1900, 1, 31, 23, 0))\n",
+ "- capacity: 10\n",
+ "- depth: 0\n",
+ "- max_depth: 25\n",
+ "- contents:\n",
+ "- number of elements: 10\n",
+ " * SpaceTimeRecord(x = -152, y = -90, datetime = 1900-01-16 16:00:00, uid = OIcjzfs5)\n",
+ " * SpaceTimeRecord(x = -177, y = 8, datetime = 1900-01-29 01:00:00, uid = xt99511W)\n",
+ " * SpaceTimeRecord(x = 0, y = 35, datetime = 1900-01-17 06:00:00, uid = 2E2Zp4SU)\n",
+ " * SpaceTimeRecord(x = -54, y = -75, datetime = 1900-01-08 12:00:00, uid = wceONvH7)\n",
+ " * SpaceTimeRecord(x = 50, y = 83, datetime = 1900-01-27 10:00:00, uid = nwuthgEW)\n",
+ " * SpaceTimeRecord(x = -158, y = 56, datetime = 1900-01-05 09:00:00, uid = svHopi53)\n",
+ " * SpaceTimeRecord(x = 61, y = -31, datetime = 1900-01-30 06:00:00, uid = wQSNr6C4)\n",
+ " * SpaceTimeRecord(x = 20, y = 54, datetime = 1900-01-19 23:00:00, uid = X0tJnSvA)\n",
+ " * SpaceTimeRecord(x = -6, y = 20, datetime = 1900-01-22 19:00:00, uid = 0K8N7iN6)\n",
+ " * SpaceTimeRecord(x = -129, y = -9, datetime = 1900-01-14 11:00:00, uid = 7yXQTGb0)\n",
+ "- with children:\n",
+ " OctTree:\n",
+ " - boundary: SpaceTimeRectangle(west=-180, east=0.0, south=0.0, north=90, start=datetime.datetime(1900, 1, 1, 0, 0), end=datetime.datetime(1900, 1, 16, 11, 30))\n",
+ " - capacity: 10\n",
+ " - depth: 1\n",
+ " - max_depth: 25\n",
+ " - contents:\n",
+ " - number of elements: 10\n",
+ " * SpaceTimeRecord(x = -166, y = 34, datetime = 1900-01-11 04:00:00, uid = vXHJHSW5)\n",
+ " * SpaceTimeRecord(x = -13, y = 21, datetime = 1900-01-05 20:00:00, uid = KgAn9Jbx)\n",
+ " * SpaceTimeRecord(x = -84, y = 88, datetime = 1900-01-06 06:00:00, uid = ViZnTg8Z)\n",
+ " * SpaceTimeRecord(x = -165, y = 37, datetime = 1900-01-08 23:00:00, uid = LAjiwrGC)\n",
+ " * SpaceTimeRecord(x = -132, y = 57, datetime = 1900-01-01 03:00:00, uid = dOI2LWaC)\n",
+ " * SpaceTimeRecord(x = -156, y = 22, datetime = 1900-01-11 01:00:00, uid = RK8e20dA)\n",
+ " * SpaceTimeRecord(x = -154, y = 56, datetime = 1900-01-09 08:00:00, uid = KqJoV8UA)\n",
+ " * SpaceTimeRecord(x = -119, y = 52, datetime = 1900-01-02 10:00:00, uid = UtEIgcof)\n",
+ " * SpaceTimeRecord(x = -161, y = 63, datetime = 1900-01-10 10:00:00, uid = QjifGPIx)\n",
+ " * SpaceTimeRecord(x = -133, y = 87, datetime = 1900-01-05 07:00:00, uid = qtolX8oT)\n",
+ " - with children:\n",
+ " OctTree:\n",
+ " - boundary: SpaceTimeRectangle(west=-180, east=-90.0, south=45.0, north=90, start=datetime.datetime(1900, 1, 1, 0, 0), end=datetime.datetime(1900, 1, 8, 17, 45))\n",
+ " - capacity: 10\n",
+ " - depth: 2\n",
+ " - max_depth: 25\n",
+ " - contents:\n",
+ " - number of elements: 10\n",
+ " * SpaceTimeRecord(x = -129, y = 54, datetime = 1900-01-05 04:00:00, uid = dZ2BgU6A)\n",
+ " * SpaceTimeRecord(x = -96, y = 67, datetime = 1900-01-07 11:00:00, uid = KK38iUxT)\n",
+ " * SpaceTimeRecord(x = -137, y = 50, datetime = 1900-01-04 15:00:00, uid = Mlj2MvCb)\n",
+ " * SpaceTimeRecord(x = -134, y = 74, datetime = 1900-01-02 04:00:00, uid = wCj1pLL6)\n",
+ " * SpaceTimeRecord(x = -158, y = 86, datetime = 1900-01-06 04:00:00, uid = sIPv5QW4)\n",
+ " * SpaceTimeRecord(x = -113, y = 56, datetime = 1900-01-08 02:00:00, uid = 5hnlO6ce)\n",
+ " * SpaceTimeRecord(x = -166, y = 54, datetime = 1900-01-08 12:00:00, uid = PXj9tTWn)\n",
+ " * SpaceTimeRecord(x = -97, y = 83, datetime = 1900-01-06 11:00:00, uid = bizLnSZk)\n",
+ " * SpaceTimeRecord(x = -126, y = 53, datetime = 1900-01-05 13:00:00, uid = guzXcRwq)\n",
+ " * SpaceTimeRecord(x = -148, y = 55, datetime = 1900-01-02 05:00:00, uid = CizwDlIJ)\n",
+ " - with children:\n",
+ " OctTree:\n",
+ " - boundary: SpaceTimeRectangle(west=-180, east=-135.0, south=67.5, north=90, start=datetime.datetime(1900, 1, 1, 0, 0), end=datetime.datetime(1900, 1, 4, 20, 52, 30))\n",
+ " - capacity: 10\n",
+ " - depth: 3\n",
+ " - max_depth: 25\n",
+ " - contents:\n",
+ " - number of elements: 10\n",
+ " * SpaceTimeRecord(x = -144, y = 83, datetime = 1900-01-03 20:00:00, uid = L5hq9qlG)\n",
+ " * SpaceTimeRecord(x = -138, y = 84, datetime = 1900-01-03 11:00:00, uid = DnDQBPlt)\n",
+ " * SpaceTimeRecord(x = -140, y = 78, datetime = 1900-01-01 11:00:00, uid = VVKqwc7O)\n",
+ " * SpaceTimeRecord(x = -179, y = 85, datetime = 1900-01-02 01:00:00, uid = fd5NWtYa)\n",
+ " * SpaceTimeRecord(x = -179, y = 86, datetime = 1900-01-04 11:00:00, uid = KJp276Fa)\n",
+ " * SpaceTimeRecord(x = -176, y = 68, datetime = 1900-01-02 06:00:00, uid = nWy0gnK4)\n",
+ " * SpaceTimeRecord(x = -136, y = 77, datetime = 1900-01-01 06:00:00, uid = 21nlHCJg)\n",
+ " * SpaceTimeRecord(x = -171, y = 82, datetime = 1900-01-04 11:00:00, uid = 5uBXalIT)\n",
+ " * SpaceTimeRecord(x = -145, y = 85, datetime = 1900-01-03 16:00:00, uid = fjG42lVI)\n",
+ " * SpaceTimeRecord(x = -155, y = 70, datetime = 1900-01-01 13:00:00, uid = lev3XeV1)\n",
+ " - with children:\n",
+ " OctTree:\n",
+ " - boundary: SpaceTimeRectangle(west=-180, east=-157.5, south=78.75, north=90, start=datetime.datetime(1900, 1, 1, 0, 0), end=datetime.datetime(1900, 1, 2, 22, 26, 15))\n",
+ " - capacity: 10\n",
+ " - depth: 4\n",
+ " - max_depth: 25\n",
+ " - contents:\n",
+ " - number of elements: 10\n",
+ " * SpaceTimeRecord(x = -169, y = 85, datetime = 1900-01-02 17:00:00, uid = xdVWmHGw)\n",
+ " * SpaceTimeRecord(x = -176, y = 87, datetime = 1900-01-01 03:00:00, uid = M6ActtYJ)\n",
+ " * SpaceTimeRecord(x = -171, y = 89, datetime = 1900-01-02 22:00:00, uid = Xw7p5CU0)\n",
+ " * SpaceTimeRecord(x = -166, y = 86, datetime = 1900-01-01 13:00:00, uid = Ini19LT9)\n",
+ " * SpaceTimeRecord(x = -166, y = 87, datetime = 1900-01-02 07:00:00, uid = 77vJfw2i000)\n",
+ " * SpaceTimeRecord(x = -164, y = 83, datetime = 1900-01-01 15:00:00, uid = tSjaLRdX000)\n",
+ " * SpaceTimeRecord(x = -171, y = 81, datetime = 1900-01-01 04:00:00, uid = xNRbwxLR000)\n",
+ " * SpaceTimeRecord(x = -177, y = 87, datetime = 1900-01-02 14:00:00, uid = 26OOsEav000)\n",
+ " * SpaceTimeRecord(x = -163, y = 80, datetime = 1900-01-02 08:00:00, uid = 80kZku0r000)\n",
+ " * SpaceTimeRecord(x = -174, y = 83, datetime = 1900-01-02 06:00:00, uid = TORItCvU001)\n",
+ " - with children:\n",
+ " OctTree:\n",
+ " - boundary: SpaceTimeRectangle(west=-180, east=-168.75, south=84.375, north=90, start=datetime.datetime(1900, 1, 1, 0, 0), end=datetime.datetime(1900, 1, 1, 23, 13, 7, 500000))\n",
+ " - capacity: 10\n",
+ " - depth: 5\n",
+ " - max_depth: 25\n",
+ " - contents:\n",
+ " - number of elements: 10\n",
+ " * SpaceTimeRecord(x = -178, y = 86, datetime = 1900-01-01 19:00:00, uid = iuABumaA002)\n",
+ " * SpaceTimeRecord(x = -172, y = 88, datetime = 1900-01-01 09:00:00, uid = 7H12EJwT002)\n",
+ " * SpaceTimeRecord(x = -176, y = 85, datetime = 1900-01-01 13:00:00, uid = A2rVtlYK006)\n"
]
}
],
"source": [
- "%%timeit\n",
- "rec = random.choice(test_recs)\n",
- "nearby_ships(lon=rec.lon, lat=rec.lat, dt=rec.datetime, max_dist=dist, dt_gap=dt, date_col=\"datetime\", pool=df, filter_datetime=True)"
+ "s = str(otree)\n",
+ "print(\"\\n\".join(s.split(\"\\n\")[:100]))"
]
},
{
"cell_type": "markdown",
- "id": "d148f129-9d8c-4c46-8f01-3e9c1e93e81a",
+ "id": "6b02c2ea-6566-47c2-97e0-43d8b18e0713",
"metadata": {},
"source": [
- "## Verify\n",
+ "## Time Execution\n",
"\n",
- "Check that records are the same"
+ "Testing the identification of nearby points against the original full search"
]
},
{
"cell_type": "code",
- "execution_count": 12,
- "id": "11f3d73a-fbe5-4f27-88d8-d0d687bd0eac",
+ "execution_count": 9,
+ "id": "094b588c-e938-4838-9719-1defdfff74fa",
"metadata": {},
+ "outputs": [],
+ "source": [
+ "dts = pl.datetime_range(\n",
+ " datetime(1900, 1, 1),\n",
+ " datetime(1900, 2, 1),\n",
+ " interval=\"1h\",\n",
+ " eager=True,\n",
+ " closed=\"left\",\n",
+ ")\n",
+ "N = dts.len()\n",
+ "lons = 180 - 360 * np.random.rand(N)\n",
+ "lats = 90 - 180 * np.random.rand(N)\n",
+ "test_df = pl.DataFrame({\"lon\": lons, \"lat\": lats, \"datetime\": dts})\n",
+ "test_recs = [Record(*r) for r in test_df.rows()]\n",
+ "dt = timedelta(days=1)\n",
+ "dist = 350"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 10,
+ "id": "66a48b86-d449-45d2-9837-2b3e07f5563d",
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "1.28 ms ± 28.2 μs per loop (mean ± std. dev. of 7 runs, 1,000 loops each)\n"
+ ]
+ }
+ ],
+ "source": [
+ "%%timeit\n",
+ "otree.nearby_points(random.choice(test_recs), dist=dist, t_dist=dt)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 11,
+ "id": "8b9279ed-6f89-4423-8833-acd0b365eb7b",
+ "metadata": {
+ "scrolled": true
+ },
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
- "CPU times: user 2.52 s, sys: 253 ms, total: 2.78 s\n",
- "Wall time: 2.66 s\n"
+ "11.8 ms ± 198 μs per loop (mean ± std. dev. of 7 runs, 100 loops each)\n"
]
}
],
+ "source": [
+ "%%timeit\n",
+ "rec = random.choice(test_recs)\n",
+ "nearby_ships(\n",
+ " lon=rec.lon,\n",
+ " lat=rec.lat,\n",
+ " dt=rec.datetime,\n",
+ " max_dist=dist,\n",
+ " dt_gap=dt,\n",
+ " date_col=\"datetime\",\n",
+ " pool=df,\n",
+ " filter_datetime=True,\n",
+ ")"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "id": "d148f129-9d8c-4c46-8f01-3e9c1e93e81a",
+ "metadata": {},
+ "source": [
+ "## Verify\n",
+ "\n",
+ "Check that records are the same"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "id": "11f3d73a-fbe5-4f27-88d8-d0d687bd0eac",
+ "metadata": {},
+ "outputs": [],
"source": [
"%%time\n",
"dist = 250\n",
"for _ in range(250):\n",
" rec = Record(*random.choice(df.rows()))\n",
- " orig = nearby_ships(lon=rec.lon, lat=rec.lat, dt=rec.datetime, max_dist=dist, dt_gap=dt, date_col=\"datetime\", pool=df, filter_datetime=True)\n",
+ " orig = nearby_ships(\n",
+ " lon=rec.lon,\n",
+ " lat=rec.lat,\n",
+ " dt=rec.datetime,\n",
+ " max_dist=dist,\n",
+ " dt_gap=dt,\n",
+ " date_col=\"datetime\",\n",
+ " pool=df,\n",
+ " filter_datetime=True,\n",
+ " ) # noqa\n",
" tree = otree.nearby_points(rec, dist=dist, t_dist=dt)\n",
" if orig.height > 0:\n",
" if not tree:\n",
@@ -649,7 +675,16 @@
" print(\"NO TREE!\")\n",
" print(f\"{orig = }\")\n",
" else:\n",
- " tree = pl.from_records([(r.lon, r.lat, r.datetime, r.uid) for r in tree], orient=\"row\").rename({\"column_0\": \"lon\", \"column_1\": \"lat\", \"column_2\": \"datetime\", \"column_3\": \"uid\"})\n",
+ " tree = pl.from_records(\n",
+ " [(r.lon, r.lat, r.datetime, r.uid) for r in tree], orient=\"row\"\n",
+ " ).rename(\n",
+ " {\n",
+ " \"column_0\": \"lon\",\n",
+ " \"column_1\": \"lat\",\n",
+ " \"column_2\": \"datetime\",\n",
+ " \"column_3\": \"uid\",\n",
+ " }\n",
+ " ) # noqa\n",
" if tree.height != orig.height:\n",
" print(\"Tree and Orig Heights Do Not Match\")\n",
" print(f\"{orig = }\")\n",
@@ -672,12 +707,16 @@
},
{
"cell_type": "code",
- "execution_count": 13,
+ "execution_count": null,
"id": "4c392292-2d9f-4301-afb5-019fde069a1e",
"metadata": {},
"outputs": [],
"source": [
- "out = otree.nearby_points(Record(179.5, -43.1, datetime(1900, 1, 14, 13)), dist=200, t_dist=timedelta(days=3))\n",
+ "out = otree.nearby_points(\n",
+ " Record(179.5, -43.1, datetime(1900, 1, 14, 13)),\n",
+ " dist=200,\n",
+ " t_dist=timedelta(days=3),\n",
+ ")\n",
"for o in out:\n",
" print(o)"
]
@@ -685,7 +724,7 @@
],
"metadata": {
"kernelspec": {
- "display_name": "GeoSpatialTools",
+ "display_name": "geospatialtools",
"language": "python",
"name": "geospatialtools"
},
@@ -699,7 +738,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
- "version": "3.12.7"
+ "version": "3.11.11"
}
},
"nbformat": 4,
diff --git a/pyproject.toml b/pyproject.toml
index ccbb80a664a813bc8a5ef1db72f3913e5ab369dd..ea346f275efc5f58ab5261f2503c897dcbfa4de0 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -33,22 +33,19 @@ classifiers = [
[project.optional-dependencies]
notebooks = ["ipykernel", "polars"]
-test = ["pytest>=8.3.4"]
-docs = [
- "sphinx>=8.2.1",
- "sphinx-autodoc-typehints>=3.1.0",
- "sphinx-rtd-theme>=3.0.2",
-]
+test = ["pytest"]
+docs = ["sphinx", "sphinx-autodoc-typehints", "sphinx-rtd-theme"]
all = [
"ipykernel",
"polars",
"pytest",
- "sphinx>=8.2.1",
- "sphinx-autodoc-typehints>=3.1.0",
- "sphinx-rtd-theme>=3.0.2",
+ "sphinx",
+ "sphinx-autodoc-typehints",
+ "sphinx-rtd-theme",
]
[tool.ruff]
+src = ["geospatialtools"]
line-length = 80
indent-width = 4
target-version = "py311"
@@ -75,6 +72,11 @@ select = [
"W", # pycodestyle warnings
]
+[tool.ruff.lint.per-file-ignores]
+"docs/*.py" = ["D100", "D101", "D102", "D103"]
+"test/**/*test*.py" = ["D100", "D101", "D102", "D103", "N802", "S101", "S311"]
+"notebooks/*.ipynb" = ["D100", "D101", "D102", "D103", "N802", "S101", "S311"]
+
[tool.ruff.format]
quote-style = "double" # Like Black, use double quotes for strings.
indent-style = "space" # Like Black, indent with spaces, rather than tabs.
diff --git a/test/test_kdtree.py b/test/test_kdtree.py
index edd1d826a46103b424317fbcec8ba0fb6ae3e8a7..dcbb433054da9e5681e7822d8dd5d361d859baf0 100644
--- a/test/test_kdtree.py
+++ b/test/test_kdtree.py
@@ -2,7 +2,7 @@ import unittest
import random
from numpy import min, argmin
-from GeoSpatialTools import haversine, KDTree, Record
+from GeoSpatialTools import KDTree, Record
class TestKDTree(unittest.TestCase):
@@ -87,7 +87,7 @@ class TestKDTree(unittest.TestCase):
kt.insert(Record(45, -21, uid="1"))
kt.insert(Record(45, -21, uid="2"))
- r, d = kt.query(Record(44, -21, uid="3"))
+ r, _ = kt.query(Record(44, -21, uid="3"))
assert len(r) == 2
def test_wrap(self):
diff --git a/test/test_neighbours.py b/test/test_neighbours.py
index e9fdbc779358bf10e6e698a0bb9af3b9fdc9bdee..76b538c2a5f08c7555b72e585c090abaa25c1dea 100644
--- a/test/test_neighbours.py
+++ b/test/test_neighbours.py
@@ -30,11 +30,11 @@ class TestFindNearest(unittest.TestCase):
def test_sorted_warn(self):
with self.assertWarns(SortedWarning):
- find_nearest([1., 2., 3.], 2.3, check_sorted=False)
+ find_nearest([1.0, 2.0, 3.0], 2.3, check_sorted=False)
def test_sorted_error(self):
with self.assertRaises(SortedError):
- find_nearest([3., 1., 2.], 2.3)
+ find_nearest([3.0, 1.0, 2.0], 2.3)
if __name__ == "__main__":
diff --git a/test/test_octtree.py b/test/test_octtree.py
index 7a3d9792294b20f9b210677ef6fd3966fce58b78..de6f335a86d671fdb7d9eb81ead9fc40ff528234 100644
--- a/test/test_octtree.py
+++ b/test/test_octtree.py
@@ -294,7 +294,7 @@ class TestOctTree(unittest.TestCase):
start = d - dt
end = d + dt
boundary = Rectangle(-180, 180, -90, 90, start, end)
- ot = OctTree(boundary, capacity=3)
+ octree = OctTree(boundary, capacity=3)
quert_rect = Rectangle(140, -160, 40, 50, d, d + timedelta(days=8))
points_want: list[Record] = [
@@ -311,9 +311,9 @@ class TestOctTree(unittest.TestCase):
]
points.extend(points_want)
for p in points:
- ot.insert(p)
+ octree.insert(p)
- res = ot.query(quert_rect)
+ res = octree.query(quert_rect)
assert len(res) == len(points_want)
assert all([p in res for p in points_want])
@@ -339,7 +339,7 @@ class TestOctTree(unittest.TestCase):
test_datetime - test_timedelta / 2,
test_datetime + test_timedelta / 2,
)
- # TEST: distint locii
+ # TEST: distinct locii
assert (ellipse.p1_lon, ellipse.p1_lat) != (
ellipse.p2_lon,
ellipse.p2_lat,
diff --git a/test/test_quadtree.py b/test/test_quadtree.py
index 482f9c5be5dbf52ce3541bb5c49b37b9d3de8fc4..93886209bf2911d48a25265eb137df261732c95f 100644
--- a/test/test_quadtree.py
+++ b/test/test_quadtree.py
@@ -155,7 +155,7 @@ class TestQuadTree(unittest.TestCase):
assert qt_boundary.lat == 0
assert qt_boundary.lat_range == 180
- qt = QuadTree(qt_boundary, capacity=3)
+ quadtree = QuadTree(qt_boundary, capacity=3)
quert_rect = Rectangle(140, -160, 40, 50)
assert quert_rect.lon == 170
@@ -176,9 +176,9 @@ class TestQuadTree(unittest.TestCase):
]
points.extend(points_want)
for p in points:
- qt.insert(p)
+ quadtree.insert(p)
- res = qt.query(quert_rect)
+ res = quadtree.query(quert_rect)
assert len(res) == len(points_want)
assert all([p in res for p in points_want])
@@ -188,7 +188,7 @@ class TestQuadTree(unittest.TestCase):
theta = 0
ellipse = Ellipse(12.5, 2.5, d1, d2, theta)
- # TEST: distint locii
+ # TEST: distinct locii
assert (ellipse.p1_lon, ellipse.p1_lat) != (
ellipse.p2_lon,
ellipse.p2_lat,
diff --git a/uv.lock b/uv.lock
new file mode 100644
index 0000000000000000000000000000000000000000..f2661f727730e3dd10e446e9663657ebee3d4344
--- /dev/null
+++ b/uv.lock
@@ -0,0 +1,1605 @@
+version = 1
+revision = 1
+requires-python = ">=3.9"
+resolution-markers = [
+ "python_full_version >= '3.11'",
+ "python_full_version == '3.10.*'",
+ "python_full_version < '3.10'",
+]
+
+[[package]]
+name = "alabaster"
+version = "0.7.16"
+source = { registry = "https://pypi.org/simple" }
+resolution-markers = [
+ "python_full_version < '3.10'",
+]
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