From ec13b89c5023c40c200db1e5a7c999d66e8cf6b6 Mon Sep 17 00:00:00 2001
From: Dr Jeff Polton <jpolton@gmail.com>
Date: Fri, 17 May 2019 17:45:42 +0100
Subject: [PATCH 01/18] Add gitignore
---
.gitignore | 2 ++
1 file changed, 2 insertions(+)
create mode 100644 .gitignore
diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..19665ba
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,2 @@
+# log file for main1.sh script
+SCRIPTS/main_output.txt
--
GitLab
From af25b9fed9a5f8fd7429bc28abf17646e9c03c18 Mon Sep 17 00:00:00 2001
From: Dr Jeff Polton <jpolton@gmail.com>
Date: Fri, 17 May 2019 17:48:25 +0100
Subject: [PATCH 02/18] Updates for restructed dir
---
ARCH/arch-XC_ARCHER_INTEL.fcm | 61 +
MY_SRC/bdyini.F90 | 1743 +++++++++++++++++
MY_SRC/diaharm.F90 | 848 ++++++++
MY_SRC/diaharm_fast.F90 | 857 ++++++++
MY_SRC/dommsk.F90 | 303 +++
MY_SRC/dtatsd.F90 | 298 +++
MY_SRC/dynnxt.F90 | 428 ++++
MY_SRC/dynspg.F90 | 242 +++
MY_SRC/par_oce.F90 | 90 +
MY_SRC/sbctide.F90 | 137 ++
MY_SRC/step.F90 | 364 ++++
MY_SRC/step_oce.F90 | 127 ++
MY_SRC/tide_FES14.h90 | 114 ++
MY_SRC/tide_mod.F90 | 430 ++++
MY_SRC/tideini.F90 | 125 ++
MY_SRC/usrdef_istate.F90 | 73 +
MY_SRC/usrdef_sbc.F90 | 86 +
.../INITIAL_CONDITION/sosie_initcd_T | 26 +
.../f_files/dynnxt.F90 | 428 ++++
.../f_files/dynspg.F90 | 242 +++
SCRIPTS/make_nemo.sh | 12 +-
SCRIPTS/make_paths.sh | 2 +-
cpp_file.fcm | 6 +
23 files changed, 7035 insertions(+), 7 deletions(-)
create mode 100755 ARCH/arch-XC_ARCHER_INTEL.fcm
create mode 100755 MY_SRC/bdyini.F90
create mode 100755 MY_SRC/diaharm.F90
create mode 100755 MY_SRC/diaharm_fast.F90
create mode 100755 MY_SRC/dommsk.F90
create mode 100755 MY_SRC/dtatsd.F90
create mode 100644 MY_SRC/dynnxt.F90
create mode 100644 MY_SRC/dynspg.F90
create mode 100755 MY_SRC/par_oce.F90
create mode 100755 MY_SRC/sbctide.F90
create mode 100755 MY_SRC/step.F90
create mode 100755 MY_SRC/step_oce.F90
create mode 100755 MY_SRC/tide_FES14.h90
create mode 100755 MY_SRC/tide_mod.F90
create mode 100755 MY_SRC/tideini.F90
create mode 100755 MY_SRC/usrdef_istate.F90
create mode 100755 MY_SRC/usrdef_sbc.F90
create mode 100644 NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/sosie_initcd_T
create mode 100644 NAMELISTS_AND_FORTRAN_FILES/f_files/dynnxt.F90
create mode 100644 NAMELISTS_AND_FORTRAN_FILES/f_files/dynspg.F90
create mode 100755 cpp_file.fcm
diff --git a/ARCH/arch-XC_ARCHER_INTEL.fcm b/ARCH/arch-XC_ARCHER_INTEL.fcm
new file mode 100755
index 0000000..c268c05
--- /dev/null
+++ b/ARCH/arch-XC_ARCHER_INTEL.fcm
@@ -0,0 +1,61 @@
+# compiler options for Archer CRAY XC-30 (using intel compiler)
+#
+# NCDF_HOME root directory containing lib and include subdirectories for netcdf4
+# HDF5_HOME root directory containing lib and include subdirectories for HDF5
+# XIOS_HOME root directory containing lib for XIOS
+# OASIS_HOME root directory containing lib for OASIS
+#
+# NCDF_INC netcdf4 include file
+# NCDF_LIB netcdf4 library
+# XIOS_INC xios include file (taken into accound only if key_iomput is activated)
+# XIOS_LIB xios library (taken into accound only if key_iomput is activated)
+# OASIS_INC oasis include file (taken into accound only if key_oasis3 is activated)
+# OASIS_LIB oasis library (taken into accound only if key_oasis3 is activated)
+#
+# FC Fortran compiler command
+# FCFLAGS Fortran compiler flags
+# FFLAGS Fortran 77 compiler flags
+# LD linker
+# LDFLAGS linker flags, e.g. -L<lib dir> if you have libraries
+# FPPFLAGS pre-processing flags
+# AR assembler
+# ARFLAGS assembler flags
+# MK make
+# USER_INC complete list of include files
+# USER_LIB complete list of libraries to pass to the linker
+# CC C compiler used to compile conv for AGRIF
+# CFLAGS compiler flags used with CC
+#
+# Note that:
+# - unix variables "$..." are accpeted and will be evaluated before calling fcm.
+# - fcm variables are starting with a % (and not a $)
+#
+%NCDF_HOME $NETCDF_DIR
+%HDF5_HOME $HDF5_DIR
+%XIOS_HOME /work/n01/n01/$USER/XIOS
+#OASIS_HOME
+
+%NCDF_INC -I%NCDF_HOME/include -I%HDF5_HOME/include
+%NCDF_LIB -L%HDF5_HOME/lib -L%NCDF_HOME/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lz
+%XIOS_INC -I%XIOS_HOME/inc
+%XIOS_LIB -L%XIOS_HOME/lib -lxios
+#OASIS_INC -I%OASIS_HOME/build/lib/mct -I%OASIS_HOME/build/lib/psmile.MPI1
+#OASIS_LIB -L%OASIS_HOME/lib -lpsmile.MPI1 -lmct -lmpeu -lscrip
+
+%CPP cpp
+%FC ftn
+%FCFLAGS -integer-size 32 -real-size 64 -g -O3 -fp-model source -zero -fpp -warn all
+%FFLAGS -integer-size 32 -real-size 64 -g -O3 -fp-model source -zero -fpp -warn all
+%LD CC -Wl,"--allow-multiple-definition"
+%FPPFLAGS -P -C -traditional
+%LDFLAGS
+%AR ar
+%ARFLAGS -r
+%MK gmake
+%USER_INC %XIOS_INC %NCDF_INC
+%USER_LIB %XIOS_LIB %NCDF_LIB
+#USER_INC %XIOS_INC %OASIS_INC %NCDF_INC
+#USER_LIB %XIOS_LIB %OASIS_LIB %NCDF_LIB
+
+%CC cc
+%CFLAGS -O0
diff --git a/MY_SRC/bdyini.F90 b/MY_SRC/bdyini.F90
new file mode 100755
index 0000000..ef881b0
--- /dev/null
+++ b/MY_SRC/bdyini.F90
@@ -0,0 +1,1743 @@
+MODULE bdyini
+ !!======================================================================
+ !! *** MODULE bdyini ***
+ !! Unstructured open boundaries : initialisation
+ !!======================================================================
+ !! History : 1.0 ! 2005-01 (J. Chanut, A. Sellar) Original code
+ !! - ! 2007-01 (D. Storkey) Update to use IOM module
+ !! - ! 2007-01 (D. Storkey) Tidal forcing
+ !! 3.0 ! 2008-04 (NEMO team) add in the reference version
+ !! 3.3 ! 2010-09 (E.O'Dea) updates for Shelf configurations
+ !! 3.3 ! 2010-09 (D.Storkey) add ice boundary conditions
+ !! 3.4 ! 2011 (D. Storkey) rewrite in preparation for OBC-BDY merge
+ !! 3.4 ! 2012 (J. Chanut) straight open boundary case update
+ !! 3.5 ! 2012 (S. Mocavero, I. Epicoco) optimization of BDY communications
+ !! 3.7 ! 2016 (T. Lovato) Remove bdy macro, call here init for dta and tides
+ !!----------------------------------------------------------------------
+ !! bdy_init : Initialization of unstructured open boundaries
+ !!----------------------------------------------------------------------
+ USE oce ! ocean dynamics and tracers variables
+ USE dom_oce ! ocean space and time domain
+ USE bdy_oce ! unstructured open boundary conditions
+ USE bdydta ! open boundary cond. setting (bdy_dta_init routine)
+ USE bdytides ! open boundary cond. setting (bdytide_init routine)
+ USE sbctide ! Tidal forcing or not
+ USE phycst , ONLY: rday
+ !
+ USE in_out_manager ! I/O units
+ USE lbclnk ! ocean lateral boundary conditions (or mpp link)
+ USE lib_mpp ! for mpp_sum
+ USE iom ! I/O
+ USE wrk_nemo ! Memory Allocation
+ USE timing ! Timing
+
+ IMPLICIT NONE
+ PRIVATE
+
+ PUBLIC bdy_init ! routine called in nemo_init
+
+ INTEGER, PARAMETER :: jp_nseg = 100 !
+ INTEGER, PARAMETER :: nrimmax = 20 ! maximum rimwidth in structured
+ ! open boundary data files
+ ! Straight open boundary segment parameters:
+ INTEGER :: nbdysege, nbdysegw, nbdysegn, nbdysegs
+ INTEGER, DIMENSION(jp_nseg) :: jpieob, jpjedt, jpjeft, npckge !
+ INTEGER, DIMENSION(jp_nseg) :: jpiwob, jpjwdt, jpjwft, npckgw !
+ INTEGER, DIMENSION(jp_nseg) :: jpjnob, jpindt, jpinft, npckgn !
+ INTEGER, DIMENSION(jp_nseg) :: jpjsob, jpisdt, jpisft, npckgs !
+ !!----------------------------------------------------------------------
+ !! NEMO/OPA 3.7 , NEMO Consortium (2015)
+ !! $Id: bdyini.F90 7646 2017-02-06 09:25:03Z timgraham $
+ !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
+ !!----------------------------------------------------------------------
+CONTAINS
+
+ SUBROUTINE bdy_init
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE bdy_init ***
+ !!
+ !! ** Purpose : Initialization of the dynamics and tracer fields with
+ !! unstructured open boundaries.
+ !!
+ !! ** Method : Read initialization arrays (mask, indices) to identify
+ !! an unstructured open boundary
+ !!
+ !! ** Input : bdy_init.nc, input file for unstructured open boundaries
+ !!----------------------------------------------------------------------
+ NAMELIST/nambdy/ ln_bdy, nb_bdy, ln_coords_file, cn_coords_file, &
+ & ln_mask_file, cn_mask_file, cn_dyn2d, nn_dyn2d_dta, &
+ & cn_dyn3d, nn_dyn3d_dta, cn_tra, nn_tra_dta, &
+ & ln_tra_dmp, ln_dyn3d_dmp, rn_time_dmp, rn_time_dmp_out, &
+ & cn_ice_lim, nn_ice_lim_dta, &
+ & rn_ice_tem, rn_ice_sal, rn_ice_age, &
+ & ln_vol, nn_volctl, nn_rimwidth, nb_jpk_bdy
+ !
+ INTEGER :: ios ! Local integer output status for namelist read
+ !!----------------------------------------------------------------------
+ !
+ IF( nn_timing == 1 ) CALL timing_start('bdy_init')
+
+ ! ------------------------
+ ! Read namelist parameters
+ ! ------------------------
+ REWIND( numnam_ref ) ! Namelist nambdy in reference namelist :Unstructured open boundaries
+ READ ( numnam_ref, nambdy, IOSTAT = ios, ERR = 901)
+901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nambdy in reference namelist', lwp )
+ !
+ REWIND( numnam_cfg ) ! Namelist nambdy in configuration namelist :Unstructured open boundaries
+ READ ( numnam_cfg, nambdy, IOSTAT = ios, ERR = 902 )
+902 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nambdy in configuration namelist', lwp )
+ IF(lwm) WRITE ( numond, nambdy )
+
+ ! -----------------------------------------
+ ! unstructured open boundaries use control
+ ! -----------------------------------------
+ IF ( ln_bdy ) THEN
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) 'bdy_init : initialization of open boundaries'
+ IF(lwp) WRITE(numout,*) '~~~~~~~~'
+ !
+ ! Open boundaries definition (arrays and masks)
+ CALL bdy_segs
+ !
+ ! Open boundaries initialisation of external data arrays
+ CALL bdy_dta_init
+ !
+ ! Open boundaries initialisation of tidal harmonic forcing
+ IF( ln_tide ) CALL bdytide_init
+ !
+ ELSE
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) 'bdy_init : open boundaries not used (ln_bdy = F)'
+ IF(lwp) WRITE(numout,*) '~~~~~~~~'
+ !
+ ENDIF
+ !
+ IF( nn_timing == 1 ) CALL timing_stop('bdy_init')
+ !
+ END SUBROUTINE bdy_init
+
+ SUBROUTINE bdy_segs
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE bdy_init ***
+ !!
+ !! ** Purpose : Definition of unstructured open boundaries.
+ !!
+ !! ** Method : Read initialization arrays (mask, indices) to identify
+ !! an unstructured open boundary
+ !!
+ !! ** Input : bdy_init.nc, input file for unstructured open boundaries
+ !!----------------------------------------------------------------------
+
+ ! local variables
+ !-------------------
+ INTEGER :: ib_bdy, ii, ij, ik, igrd, ib, ir, iseg ! dummy loop indices
+ INTEGER :: icount, icountr, ibr_max, ilen1, ibm1 ! local integers
+ INTEGER :: iwe, ies, iso, ino, inum, id_dummy ! - -
+ INTEGER :: igrd_start, igrd_end, jpbdta ! - -
+ INTEGER :: jpbdtau, jpbdtas ! - -
+ INTEGER :: ib_bdy1, ib_bdy2, ib1, ib2 ! - -
+ INTEGER :: i_offset, j_offset ! - -
+ INTEGER , POINTER :: nbi, nbj, nbr ! short cuts
+ REAL(wp), POINTER :: flagu, flagv ! - -
+ REAL(wp), POINTER, DIMENSION(:,:) :: pmask ! pointer to 2D mask fields
+ REAL(wp) :: zefl, zwfl, znfl, zsfl ! local scalars
+ INTEGER, DIMENSION (2) :: kdimsz
+ INTEGER, DIMENSION(jpbgrd,jp_bdy) :: nblendta ! Length of index arrays
+ INTEGER, ALLOCATABLE, DIMENSION(:,:,:) :: nbidta, nbjdta ! Index arrays: i and j indices of bdy dta
+ INTEGER, ALLOCATABLE, DIMENSION(:,:,:) :: nbrdta ! Discrete distance from rim points
+ CHARACTER(LEN=1),DIMENSION(jpbgrd) :: cgrid
+ INTEGER :: com_east, com_west, com_south, com_north ! Flags for boundaries sending
+ INTEGER :: com_east_b, com_west_b, com_south_b, com_north_b ! Flags for boundaries receiving
+ INTEGER :: iw_b(4), ie_b(4), is_b(4), in_b(4) ! Arrays for neighbours coordinates
+ REAL(wp), POINTER, DIMENSION(:,:) :: zfmask ! temporary fmask array excluding coastal boundary condition (shlat)
+ !!
+ CHARACTER(LEN=1) :: ctypebdy ! - -
+ INTEGER :: nbdyind, nbdybeg, nbdyend
+ !!
+ NAMELIST/nambdy_index/ ctypebdy, nbdyind, nbdybeg, nbdyend
+ INTEGER :: ios ! Local integer output status for namelist read
+ !!----------------------------------------------------------------------
+ !
+ IF( nn_timing == 1 ) CALL timing_start('bdy_segs')
+ !
+ cgrid = (/'t','u','v'/)
+
+ ! -----------------------------------------
+ ! Check and write out namelist parameters
+ ! -----------------------------------------
+! IF( jperio /= 0 ) CALL ctl_stop( 'bdy_segs: Cyclic or symmetric,', &
+! & ' and general open boundary condition are not compatible' )
+
+ IF( nb_bdy == 0 ) THEN
+ IF(lwp) WRITE(numout,*) 'nb_bdy = 0, NO OPEN BOUNDARIES APPLIED.'
+ ELSE
+ IF(lwp) WRITE(numout,*) 'Number of open boundary sets : ', nb_bdy
+ ENDIF
+
+ DO ib_bdy = 1,nb_bdy
+ IF(lwp) WRITE(numout,*) ' '
+ IF(lwp) WRITE(numout,*) '------ Open boundary data set ',ib_bdy,'------'
+
+ IF( ln_coords_file(ib_bdy) ) THEN
+ IF(lwp) WRITE(numout,*) 'Boundary definition read from file '//TRIM(cn_coords_file(ib_bdy))
+ ELSE
+ IF(lwp) WRITE(numout,*) 'Boundary defined in namelist.'
+ ENDIF
+ IF(lwp) WRITE(numout,*)
+
+ IF(lwp) WRITE(numout,*) 'Boundary conditions for barotropic solution: '
+ SELECT CASE( cn_dyn2d(ib_bdy) )
+ CASE( 'none' )
+ IF(lwp) WRITE(numout,*) ' no open boundary condition'
+ dta_bdy(ib_bdy)%ll_ssh = .false.
+ dta_bdy(ib_bdy)%ll_u2d = .false.
+ dta_bdy(ib_bdy)%ll_v2d = .false.
+ CASE( 'frs' )
+ IF(lwp) WRITE(numout,*) ' Flow Relaxation Scheme'
+ dta_bdy(ib_bdy)%ll_ssh = .false.
+ dta_bdy(ib_bdy)%ll_u2d = .true.
+ dta_bdy(ib_bdy)%ll_v2d = .true.
+ CASE( 'flather' )
+ IF(lwp) WRITE(numout,*) ' Flather radiation condition'
+ dta_bdy(ib_bdy)%ll_ssh = .true.
+ dta_bdy(ib_bdy)%ll_u2d = .true.
+ dta_bdy(ib_bdy)%ll_v2d = .true.
+ CASE( 'orlanski' )
+ IF(lwp) WRITE(numout,*) ' Orlanski (fully oblique) radiation condition with adaptive nudging'
+ dta_bdy(ib_bdy)%ll_ssh = .false.
+ dta_bdy(ib_bdy)%ll_u2d = .true.
+ dta_bdy(ib_bdy)%ll_v2d = .true.
+ CASE( 'orlanski_npo' )
+ IF(lwp) WRITE(numout,*) ' Orlanski (NPO) radiation condition with adaptive nudging'
+ dta_bdy(ib_bdy)%ll_ssh = .false.
+ dta_bdy(ib_bdy)%ll_u2d = .true.
+ dta_bdy(ib_bdy)%ll_v2d = .true.
+ CASE DEFAULT ; CALL ctl_stop( 'unrecognised value for cn_dyn2d' )
+ END SELECT
+ IF( cn_dyn2d(ib_bdy) /= 'none' ) THEN
+ SELECT CASE( nn_dyn2d_dta(ib_bdy) ) !
+ CASE( 0 ) ; IF(lwp) WRITE(numout,*) ' initial state used for bdy data'
+ CASE( 1 ) ; IF(lwp) WRITE(numout,*) ' boundary data taken from file'
+ CASE( 2 ) ; IF(lwp) WRITE(numout,*) ' tidal harmonic forcing taken from file'
+ CASE( 3 ) ; IF(lwp) WRITE(numout,*) ' boundary data AND tidal harmonic forcing taken from files'
+ CASE DEFAULT ; CALL ctl_stop( 'nn_dyn2d_dta must be between 0 and 3' )
+ END SELECT
+ IF (( nn_dyn2d_dta(ib_bdy) .ge. 2 ).AND.(.NOT.ln_tide)) THEN
+ CALL ctl_stop( 'You must activate with ln_tide to add tidal forcing at open boundaries' )
+ ENDIF
+ ENDIF
+ IF(lwp) WRITE(numout,*)
+
+ IF(lwp) WRITE(numout,*) 'Boundary conditions for baroclinic velocities: '
+ SELECT CASE( cn_dyn3d(ib_bdy) )
+ CASE('none')
+ IF(lwp) WRITE(numout,*) ' no open boundary condition'
+ dta_bdy(ib_bdy)%ll_u3d = .false.
+ dta_bdy(ib_bdy)%ll_v3d = .false.
+ CASE('frs')
+ IF(lwp) WRITE(numout,*) ' Flow Relaxation Scheme'
+ dta_bdy(ib_bdy)%ll_u3d = .true.
+ dta_bdy(ib_bdy)%ll_v3d = .true.
+ CASE('specified')
+ IF(lwp) WRITE(numout,*) ' Specified value'
+ dta_bdy(ib_bdy)%ll_u3d = .true.
+ dta_bdy(ib_bdy)%ll_v3d = .true.
+ CASE('neumann')
+ IF(lwp) WRITE(numout,*) ' Neumann conditions'
+ dta_bdy(ib_bdy)%ll_u3d = .false.
+ dta_bdy(ib_bdy)%ll_v3d = .false.
+ CASE('zerograd')
+ IF(lwp) WRITE(numout,*) ' Zero gradient for baroclinic velocities'
+ dta_bdy(ib_bdy)%ll_u3d = .false.
+ dta_bdy(ib_bdy)%ll_v3d = .false.
+ CASE('zero')
+ IF(lwp) WRITE(numout,*) ' Zero baroclinic velocities (runoff case)'
+ dta_bdy(ib_bdy)%ll_u3d = .false.
+ dta_bdy(ib_bdy)%ll_v3d = .false.
+ CASE('orlanski')
+ IF(lwp) WRITE(numout,*) ' Orlanski (fully oblique) radiation condition with adaptive nudging'
+ dta_bdy(ib_bdy)%ll_u3d = .true.
+ dta_bdy(ib_bdy)%ll_v3d = .true.
+ CASE('orlanski_npo')
+ IF(lwp) WRITE(numout,*) ' Orlanski (NPO) radiation condition with adaptive nudging'
+ dta_bdy(ib_bdy)%ll_u3d = .true.
+ dta_bdy(ib_bdy)%ll_v3d = .true.
+ CASE DEFAULT ; CALL ctl_stop( 'unrecognised value for cn_dyn3d' )
+ END SELECT
+ IF( cn_dyn3d(ib_bdy) /= 'none' ) THEN
+ SELECT CASE( nn_dyn3d_dta(ib_bdy) ) !
+ CASE( 0 ) ; IF(lwp) WRITE(numout,*) ' initial state used for bdy data'
+ CASE( 1 ) ; IF(lwp) WRITE(numout,*) ' boundary data taken from file'
+ CASE DEFAULT ; CALL ctl_stop( 'nn_dyn3d_dta must be 0 or 1' )
+ END SELECT
+ ENDIF
+
+ IF ( ln_dyn3d_dmp(ib_bdy) ) THEN
+ IF ( cn_dyn3d(ib_bdy) == 'none' ) THEN
+ IF(lwp) WRITE(numout,*) 'No open boundary condition for baroclinic velocities: ln_dyn3d_dmp is set to .false.'
+ ln_dyn3d_dmp(ib_bdy)=.false.
+ ELSEIF ( cn_dyn3d(ib_bdy) == 'frs' ) THEN
+ CALL ctl_stop( 'Use FRS OR relaxation' )
+ ELSE
+ IF(lwp) WRITE(numout,*) ' + baroclinic velocities relaxation zone'
+ IF(lwp) WRITE(numout,*) ' Damping time scale: ',rn_time_dmp(ib_bdy),' days'
+ IF((lwp).AND.rn_time_dmp(ib_bdy)<0) CALL ctl_stop( 'Time scale must be positive' )
+ dta_bdy(ib_bdy)%ll_u3d = .true.
+ dta_bdy(ib_bdy)%ll_v3d = .true.
+ ENDIF
+ ELSE
+ IF(lwp) WRITE(numout,*) ' NO relaxation on baroclinic velocities'
+ ENDIF
+ IF(lwp) WRITE(numout,*)
+
+ IF(lwp) WRITE(numout,*) 'Boundary conditions for temperature and salinity: '
+ SELECT CASE( cn_tra(ib_bdy) )
+ CASE('none')
+ IF(lwp) WRITE(numout,*) ' no open boundary condition'
+ dta_bdy(ib_bdy)%ll_tem = .false.
+ dta_bdy(ib_bdy)%ll_sal = .false.
+ CASE('frs')
+ IF(lwp) WRITE(numout,*) ' Flow Relaxation Scheme'
+ dta_bdy(ib_bdy)%ll_tem = .true.
+ dta_bdy(ib_bdy)%ll_sal = .true.
+ CASE('specified')
+ IF(lwp) WRITE(numout,*) ' Specified value'
+ dta_bdy(ib_bdy)%ll_tem = .true.
+ dta_bdy(ib_bdy)%ll_sal = .true.
+ CASE('neumann')
+ IF(lwp) WRITE(numout,*) ' Neumann conditions'
+ dta_bdy(ib_bdy)%ll_tem = .false.
+ dta_bdy(ib_bdy)%ll_sal = .false.
+ CASE('runoff')
+ IF(lwp) WRITE(numout,*) ' Runoff conditions : Neumann for T and specified to 0.1 for salinity'
+ dta_bdy(ib_bdy)%ll_tem = .false.
+ dta_bdy(ib_bdy)%ll_sal = .false.
+ CASE('orlanski')
+ IF(lwp) WRITE(numout,*) ' Orlanski (fully oblique) radiation condition with adaptive nudging'
+ dta_bdy(ib_bdy)%ll_tem = .true.
+ dta_bdy(ib_bdy)%ll_sal = .true.
+ CASE('orlanski_npo')
+ IF(lwp) WRITE(numout,*) ' Orlanski (NPO) radiation condition with adaptive nudging'
+ dta_bdy(ib_bdy)%ll_tem = .true.
+ dta_bdy(ib_bdy)%ll_sal = .true.
+ CASE DEFAULT ; CALL ctl_stop( 'unrecognised value for cn_tra' )
+ END SELECT
+ IF( cn_tra(ib_bdy) /= 'none' ) THEN
+ SELECT CASE( nn_tra_dta(ib_bdy) ) !
+ CASE( 0 ) ; IF(lwp) WRITE(numout,*) ' initial state used for bdy data'
+ CASE( 1 ) ; IF(lwp) WRITE(numout,*) ' boundary data taken from file'
+ CASE DEFAULT ; CALL ctl_stop( 'nn_tra_dta must be 0 or 1' )
+ END SELECT
+ ENDIF
+
+ IF ( ln_tra_dmp(ib_bdy) ) THEN
+ IF ( cn_tra(ib_bdy) == 'none' ) THEN
+ IF(lwp) WRITE(numout,*) 'No open boundary condition for tracers: ln_tra_dmp is set to .false.'
+ ln_tra_dmp(ib_bdy)=.false.
+ ELSEIF ( cn_tra(ib_bdy) == 'frs' ) THEN
+ CALL ctl_stop( 'Use FRS OR relaxation' )
+ ELSE
+ IF(lwp) WRITE(numout,*) ' + T/S relaxation zone'
+ IF(lwp) WRITE(numout,*) ' Damping time scale: ',rn_time_dmp(ib_bdy),' days'
+ IF(lwp) WRITE(numout,*) ' Outflow damping time scale: ',rn_time_dmp_out(ib_bdy),' days'
+ IF((lwp).AND.rn_time_dmp(ib_bdy)<0) CALL ctl_stop( 'Time scale must be positive' )
+ dta_bdy(ib_bdy)%ll_tem = .true.
+ dta_bdy(ib_bdy)%ll_sal = .true.
+ ENDIF
+ ELSE
+ IF(lwp) WRITE(numout,*) ' NO T/S relaxation'
+ ENDIF
+ IF(lwp) WRITE(numout,*)
+
+#if defined key_lim2
+ IF(lwp) WRITE(numout,*) 'Boundary conditions for sea ice: '
+ SELECT CASE( cn_ice_lim(ib_bdy) )
+ CASE('none')
+ IF(lwp) WRITE(numout,*) ' no open boundary condition'
+ dta_bdy(ib_bdy)%ll_frld = .false.
+ dta_bdy(ib_bdy)%ll_hicif = .false.
+ dta_bdy(ib_bdy)%ll_hsnif = .false.
+ CASE('frs')
+ IF(lwp) WRITE(numout,*) ' Flow Relaxation Scheme'
+ dta_bdy(ib_bdy)%ll_frld = .true.
+ dta_bdy(ib_bdy)%ll_hicif = .true.
+ dta_bdy(ib_bdy)%ll_hsnif = .true.
+ CASE DEFAULT ; CALL ctl_stop( 'unrecognised value for cn_ice_lim' )
+ END SELECT
+ IF( cn_ice_lim(ib_bdy) /= 'none' ) THEN
+ SELECT CASE( nn_ice_lim_dta(ib_bdy) ) !
+ CASE( 0 ) ; IF(lwp) WRITE(numout,*) ' initial state used for bdy data'
+ CASE( 1 ) ; IF(lwp) WRITE(numout,*) ' boundary data taken from file'
+ CASE DEFAULT ; CALL ctl_stop( 'nn_ice_lim_dta must be 0 or 1' )
+ END SELECT
+ ENDIF
+ IF(lwp) WRITE(numout,*)
+#elif defined key_lim3
+ IF(lwp) WRITE(numout,*) 'Boundary conditions for sea ice: '
+ SELECT CASE( cn_ice_lim(ib_bdy) )
+ CASE('none')
+ IF(lwp) WRITE(numout,*) ' no open boundary condition'
+ dta_bdy(ib_bdy)%ll_a_i = .false.
+ dta_bdy(ib_bdy)%ll_ht_i = .false.
+ dta_bdy(ib_bdy)%ll_ht_s = .false.
+ CASE('frs')
+ IF(lwp) WRITE(numout,*) ' Flow Relaxation Scheme'
+ dta_bdy(ib_bdy)%ll_a_i = .true.
+ dta_bdy(ib_bdy)%ll_ht_i = .true.
+ dta_bdy(ib_bdy)%ll_ht_s = .true.
+ CASE DEFAULT ; CALL ctl_stop( 'unrecognised value for cn_ice_lim' )
+ END SELECT
+ IF( cn_ice_lim(ib_bdy) /= 'none' ) THEN
+ SELECT CASE( nn_ice_lim_dta(ib_bdy) ) !
+ CASE( 0 ) ; IF(lwp) WRITE(numout,*) ' initial state used for bdy data'
+ CASE( 1 ) ; IF(lwp) WRITE(numout,*) ' boundary data taken from file'
+ CASE DEFAULT ; CALL ctl_stop( 'nn_ice_lim_dta must be 0 or 1' )
+ END SELECT
+ ENDIF
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) ' tem of bdy sea-ice = ', rn_ice_tem(ib_bdy)
+ IF(lwp) WRITE(numout,*) ' sal of bdy sea-ice = ', rn_ice_sal(ib_bdy)
+ IF(lwp) WRITE(numout,*) ' age of bdy sea-ice = ', rn_ice_age(ib_bdy)
+#endif
+
+ IF(lwp) WRITE(numout,*) ' Width of relaxation zone = ', nn_rimwidth(ib_bdy)
+ IF(lwp) WRITE(numout,*)
+
+ ENDDO
+
+ IF (nb_bdy .gt. 0) THEN
+ IF( ln_vol ) THEN ! check volume conservation (nn_volctl value)
+ IF(lwp) WRITE(numout,*) 'Volume correction applied at open boundaries'
+ IF(lwp) WRITE(numout,*)
+ SELECT CASE ( nn_volctl )
+ CASE( 1 ) ; IF(lwp) WRITE(numout,*) ' The total volume will be constant'
+ CASE( 0 ) ; IF(lwp) WRITE(numout,*) ' The total volume will vary according to the surface E-P flux'
+ CASE DEFAULT ; CALL ctl_stop( 'nn_volctl must be 0 or 1' )
+ END SELECT
+ IF(lwp) WRITE(numout,*)
+ ELSE
+ IF(lwp) WRITE(numout,*) 'No volume correction applied at open boundaries'
+ IF(lwp) WRITE(numout,*)
+ ENDIF
+ IF( nb_jpk_bdy > 0 ) THEN
+ IF(lwp) WRITE(numout,*) '*** open boundary will be interpolate in the vertical onto the native grid ***'
+ ELSE
+ IF(lwp) WRITE(numout,*) '*** open boundary will be read straight onto the native grid without vertical interpolation ***'
+ ENDIF
+ ENDIF
+
+ ! -------------------------------------------------
+ ! Initialise indices arrays for open boundaries
+ ! -------------------------------------------------
+
+ ! Work out global dimensions of boundary data
+ ! ---------------------------------------------
+ REWIND( numnam_cfg )
+
+ nblendta(:,:) = 0
+ nbdysege = 0
+ nbdysegw = 0
+ nbdysegn = 0
+ nbdysegs = 0
+ icount = 0 ! count user defined segments
+ ! Dimensions below are used to allocate arrays to read external data
+ jpbdtas = 1 ! Maximum size of boundary data (structured case)
+ jpbdtau = 1 ! Maximum size of boundary data (unstructured case)
+
+ DO ib_bdy = 1, nb_bdy
+
+ IF( .NOT. ln_coords_file(ib_bdy) ) THEN ! Work out size of global arrays from namelist parameters
+
+ icount = icount + 1
+ ! No REWIND here because may need to read more than one nambdy_index namelist.
+ ! Read only namelist_cfg to avoid unseccessfull overwrite
+!! REWIND( numnam_ref ) ! Namelist nambdy_index in reference namelist : Open boundaries indexes
+!! READ ( numnam_ref, namrun, IOSTAT = ios, ERR = 903)
+!!903 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nambdy_index in reference namelist', lwp )
+
+!! REWIND( numnam_cfg ) ! Namelist nambdy_index in configuration namelist : Open boundaries indexes
+ READ ( numnam_cfg, nambdy_index, IOSTAT = ios, ERR = 904 )
+904 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nambdy_index in configuration namelist', lwp )
+ IF(lwm) WRITE ( numond, nambdy_index )
+
+ SELECT CASE ( TRIM(ctypebdy) )
+ CASE( 'N' )
+ IF( nbdyind == -1 ) THEN ! Automatic boundary definition: if nbdysegX = -1
+ nbdyind = jpjglo - 2 ! set boundary to whole side of model domain.
+ nbdybeg = 2
+ nbdyend = jpiglo - 1
+ ENDIF
+ nbdysegn = nbdysegn + 1
+ npckgn(nbdysegn) = ib_bdy ! Save bdy package number
+ jpjnob(nbdysegn) = nbdyind
+ jpindt(nbdysegn) = nbdybeg
+ jpinft(nbdysegn) = nbdyend
+ !
+ CASE( 'S' )
+ IF( nbdyind == -1 ) THEN ! Automatic boundary definition: if nbdysegX = -1
+ nbdyind = 2 ! set boundary to whole side of model domain.
+ nbdybeg = 2
+ nbdyend = jpiglo - 1
+ ENDIF
+ nbdysegs = nbdysegs + 1
+ npckgs(nbdysegs) = ib_bdy ! Save bdy package number
+ jpjsob(nbdysegs) = nbdyind
+ jpisdt(nbdysegs) = nbdybeg
+ jpisft(nbdysegs) = nbdyend
+ !
+ CASE( 'E' )
+ IF( nbdyind == -1 ) THEN ! Automatic boundary definition: if nbdysegX = -1
+ nbdyind = jpiglo - 2 ! set boundary to whole side of model domain.
+ nbdybeg = 2
+ nbdyend = jpjglo - 1
+ ENDIF
+ nbdysege = nbdysege + 1
+ npckge(nbdysege) = ib_bdy ! Save bdy package number
+ jpieob(nbdysege) = nbdyind
+ jpjedt(nbdysege) = nbdybeg
+ jpjeft(nbdysege) = nbdyend
+ !
+ CASE( 'W' )
+ IF( nbdyind == -1 ) THEN ! Automatic boundary definition: if nbdysegX = -1
+ nbdyind = 2 ! set boundary to whole side of model domain.
+ nbdybeg = 2
+ nbdyend = jpjglo - 1
+ ENDIF
+ nbdysegw = nbdysegw + 1
+ npckgw(nbdysegw) = ib_bdy ! Save bdy package number
+ jpiwob(nbdysegw) = nbdyind
+ jpjwdt(nbdysegw) = nbdybeg
+ jpjwft(nbdysegw) = nbdyend
+ !
+ CASE DEFAULT ; CALL ctl_stop( 'ctypebdy must be N, S, E or W' )
+ END SELECT
+
+ ! For simplicity we assume that in case of straight bdy, arrays have the same length
+ ! (even if it is true that last tangential velocity points
+ ! are useless). This simplifies a little bit boundary data format (and agrees with format
+ ! used so far in obc package)
+
+ nblendta(1:jpbgrd,ib_bdy) = (nbdyend - nbdybeg + 1) * nn_rimwidth(ib_bdy)
+ jpbdtas = MAX(jpbdtas, (nbdyend - nbdybeg + 1))
+ IF (lwp.and.(nn_rimwidth(ib_bdy)>nrimmax)) &
+ & CALL ctl_stop( 'rimwidth must be lower than nrimmax' )
+
+ ELSE ! Read size of arrays in boundary coordinates file.
+ CALL iom_open( cn_coords_file(ib_bdy), inum )
+ DO igrd = 1, jpbgrd
+ id_dummy = iom_varid( inum, 'nbi'//cgrid(igrd), kdimsz=kdimsz )
+ !clem nblendta(igrd,ib_bdy) = kdimsz(1)
+ !clem jpbdtau = MAX(jpbdtau, kdimsz(1))
+ nblendta(igrd,ib_bdy) = MAXVAL(kdimsz)
+ jpbdtau = MAX(jpbdtau, MAXVAL(kdimsz))
+ END DO
+ CALL iom_close( inum )
+ !
+ ENDIF
+ !
+ END DO ! ib_bdy
+
+ IF (nb_bdy>0) THEN
+ jpbdta = MAXVAL(nblendta(1:jpbgrd,1:nb_bdy))
+
+ ! Allocate arrays
+ !---------------
+ ALLOCATE( nbidta(jpbdta, jpbgrd, nb_bdy), nbjdta(jpbdta, jpbgrd, nb_bdy), &
+ & nbrdta(jpbdta, jpbgrd, nb_bdy) )
+
+ IF( nb_jpk_bdy>0 ) THEN
+ ALLOCATE( dta_global(jpbdtau, 1, nb_jpk_bdy) )
+ ALLOCATE( dta_global_z(jpbdtau, 1, nb_jpk_bdy) )
+ ALLOCATE( dta_global_dz(jpbdtau, 1, nb_jpk_bdy) )
+ ELSE
+ ALLOCATE( dta_global(jpbdtau, 1, jpk) )
+ ALLOCATE( dta_global_z(jpbdtau, 1, jpk) ) ! needed ?? TODO
+ ALLOCATE( dta_global_dz(jpbdtau, 1, jpk) )! needed ?? TODO
+ ENDIF
+
+ IF ( icount>0 ) THEN
+ IF( nb_jpk_bdy>0 ) THEN
+ ALLOCATE( dta_global2(jpbdtas, nrimmax, nb_jpk_bdy) )
+ ALLOCATE( dta_global2_z(jpbdtas, nrimmax, nb_jpk_bdy) )
+ ALLOCATE( dta_global2_dz(jpbdtas, nrimmax, nb_jpk_bdy) )
+ ELSE
+ ALLOCATE( dta_global2(jpbdtas, nrimmax, jpk) )
+ ALLOCATE( dta_global2_z(jpbdtas, nrimmax, jpk) ) ! needed ?? TODO
+ ALLOCATE( dta_global2_dz(jpbdtas, nrimmax, jpk) )! needed ?? TODO
+ ENDIF
+ ENDIF
+ !
+ ENDIF
+
+ ! Now look for crossings in user (namelist) defined open boundary segments:
+ !--------------------------------------------------------------------------
+ IF( icount>0 ) CALL bdy_ctl_seg
+
+ ! Calculate global boundary index arrays or read in from file
+ !------------------------------------------------------------
+ ! 1. Read global index arrays from boundary coordinates file.
+ DO ib_bdy = 1, nb_bdy
+ !
+ IF( ln_coords_file(ib_bdy) ) THEN
+ !
+ CALL iom_open( cn_coords_file(ib_bdy), inum )
+ DO igrd = 1, jpbgrd
+ CALL iom_get( inum, jpdom_unknown, 'nbi'//cgrid(igrd), dta_global(1:nblendta(igrd,ib_bdy),:,1) )
+ DO ii = 1,nblendta(igrd,ib_bdy)
+ nbidta(ii,igrd,ib_bdy) = INT( dta_global(ii,1,1) )
+ END DO
+ CALL iom_get( inum, jpdom_unknown, 'nbj'//cgrid(igrd), dta_global(1:nblendta(igrd,ib_bdy),:,1) )
+ DO ii = 1,nblendta(igrd,ib_bdy)
+ nbjdta(ii,igrd,ib_bdy) = INT( dta_global(ii,1,1) )
+ END DO
+ CALL iom_get( inum, jpdom_unknown, 'nbr'//cgrid(igrd), dta_global(1:nblendta(igrd,ib_bdy),:,1) )
+ DO ii = 1,nblendta(igrd,ib_bdy)
+ nbrdta(ii,igrd,ib_bdy) = INT( dta_global(ii,1,1) )
+ END DO
+ !
+ ibr_max = MAXVAL( nbrdta(:,igrd,ib_bdy) )
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) ' Maximum rimwidth in file is ', ibr_max
+ IF(lwp) WRITE(numout,*) ' nn_rimwidth from namelist is ', nn_rimwidth(ib_bdy)
+ IF (ibr_max < nn_rimwidth(ib_bdy)) &
+ CALL ctl_stop( 'nn_rimwidth is larger than maximum rimwidth in file',cn_coords_file(ib_bdy) )
+ END DO
+ CALL iom_close( inum )
+ !
+ ENDIF
+ !
+ END DO
+
+ ! 2. Now fill indices corresponding to straight open boundary arrays:
+ ! East
+ !-----
+ DO iseg = 1, nbdysege
+ ib_bdy = npckge(iseg)
+ !
+ ! ------------ T points -------------
+ igrd=1
+ icount=0
+ DO ir = 1, nn_rimwidth(ib_bdy)
+ DO ij = jpjedt(iseg), jpjeft(iseg)
+ icount = icount + 1
+ nbidta(icount, igrd, ib_bdy) = jpieob(iseg) + 2 - ir
+ nbjdta(icount, igrd, ib_bdy) = ij
+ nbrdta(icount, igrd, ib_bdy) = ir
+ ENDDO
+ ENDDO
+ !
+ ! ------------ U points -------------
+ igrd=2
+ icount=0
+ DO ir = 1, nn_rimwidth(ib_bdy)
+ DO ij = jpjedt(iseg), jpjeft(iseg)
+ icount = icount + 1
+ nbidta(icount, igrd, ib_bdy) = jpieob(iseg) + 1 - ir
+ nbjdta(icount, igrd, ib_bdy) = ij
+ nbrdta(icount, igrd, ib_bdy) = ir
+ ENDDO
+ ENDDO
+ !
+ ! ------------ V points -------------
+ igrd=3
+ icount=0
+ DO ir = 1, nn_rimwidth(ib_bdy)
+! DO ij = jpjedt(iseg), jpjeft(iseg) - 1
+ DO ij = jpjedt(iseg), jpjeft(iseg)
+ icount = icount + 1
+ nbidta(icount, igrd, ib_bdy) = jpieob(iseg) + 2 - ir
+ nbjdta(icount, igrd, ib_bdy) = ij
+ nbrdta(icount, igrd, ib_bdy) = ir
+ ENDDO
+ nbidta(icount, igrd, ib_bdy) = -ib_bdy ! Discount this point
+ nbjdta(icount, igrd, ib_bdy) = -ib_bdy ! Discount this point
+ ENDDO
+ ENDDO
+ !
+ ! West
+ !-----
+ DO iseg = 1, nbdysegw
+ ib_bdy = npckgw(iseg)
+ !
+ ! ------------ T points -------------
+ igrd=1
+ icount=0
+ DO ir = 1, nn_rimwidth(ib_bdy)
+ DO ij = jpjwdt(iseg), jpjwft(iseg)
+ icount = icount + 1
+ nbidta(icount, igrd, ib_bdy) = jpiwob(iseg) + ir - 1
+ nbjdta(icount, igrd, ib_bdy) = ij
+ nbrdta(icount, igrd, ib_bdy) = ir
+ ENDDO
+ ENDDO
+ !
+ ! ------------ U points -------------
+ igrd=2
+ icount=0
+ DO ir = 1, nn_rimwidth(ib_bdy)
+ DO ij = jpjwdt(iseg), jpjwft(iseg)
+ icount = icount + 1
+ nbidta(icount, igrd, ib_bdy) = jpiwob(iseg) + ir - 1
+ nbjdta(icount, igrd, ib_bdy) = ij
+ nbrdta(icount, igrd, ib_bdy) = ir
+ ENDDO
+ ENDDO
+ !
+ ! ------------ V points -------------
+ igrd=3
+ icount=0
+ DO ir = 1, nn_rimwidth(ib_bdy)
+! DO ij = jpjwdt(iseg), jpjwft(iseg) - 1
+ DO ij = jpjwdt(iseg), jpjwft(iseg)
+ icount = icount + 1
+ nbidta(icount, igrd, ib_bdy) = jpiwob(iseg) + ir - 1
+ nbjdta(icount, igrd, ib_bdy) = ij
+ nbrdta(icount, igrd, ib_bdy) = ir
+ ENDDO
+ nbidta(icount, igrd, ib_bdy) = -ib_bdy ! Discount this point
+ nbjdta(icount, igrd, ib_bdy) = -ib_bdy ! Discount this point
+ ENDDO
+ ENDDO
+ !
+ ! North
+ !-----
+ DO iseg = 1, nbdysegn
+ ib_bdy = npckgn(iseg)
+ !
+ ! ------------ T points -------------
+ igrd=1
+ icount=0
+ DO ir = 1, nn_rimwidth(ib_bdy)
+ DO ii = jpindt(iseg), jpinft(iseg)
+ icount = icount + 1
+ nbidta(icount, igrd, ib_bdy) = ii
+ nbjdta(icount, igrd, ib_bdy) = jpjnob(iseg) + 2 - ir
+ nbrdta(icount, igrd, ib_bdy) = ir
+ ENDDO
+ ENDDO
+ !
+ ! ------------ U points -------------
+ igrd=2
+ icount=0
+ DO ir = 1, nn_rimwidth(ib_bdy)
+! DO ii = jpindt(iseg), jpinft(iseg) - 1
+ DO ii = jpindt(iseg), jpinft(iseg)
+ icount = icount + 1
+ nbidta(icount, igrd, ib_bdy) = ii
+ nbjdta(icount, igrd, ib_bdy) = jpjnob(iseg) + 2 - ir
+ nbrdta(icount, igrd, ib_bdy) = ir
+ ENDDO
+ nbidta(icount, igrd, ib_bdy) = -ib_bdy ! Discount this point
+ nbjdta(icount, igrd, ib_bdy) = -ib_bdy ! Discount this point
+ ENDDO
+ !
+ ! ------------ V points -------------
+ igrd=3
+ icount=0
+ DO ir = 1, nn_rimwidth(ib_bdy)
+ DO ii = jpindt(iseg), jpinft(iseg)
+ icount = icount + 1
+ nbidta(icount, igrd, ib_bdy) = ii
+ nbjdta(icount, igrd, ib_bdy) = jpjnob(iseg) + 1 - ir
+ nbrdta(icount, igrd, ib_bdy) = ir
+ ENDDO
+ ENDDO
+ ENDDO
+ !
+ ! South
+ !-----
+ DO iseg = 1, nbdysegs
+ ib_bdy = npckgs(iseg)
+ !
+ ! ------------ T points -------------
+ igrd=1
+ icount=0
+ DO ir = 1, nn_rimwidth(ib_bdy)
+ DO ii = jpisdt(iseg), jpisft(iseg)
+ icount = icount + 1
+ nbidta(icount, igrd, ib_bdy) = ii
+ nbjdta(icount, igrd, ib_bdy) = jpjsob(iseg) + ir - 1
+ nbrdta(icount, igrd, ib_bdy) = ir
+ ENDDO
+ ENDDO
+ !
+ ! ------------ U points -------------
+ igrd=2
+ icount=0
+ DO ir = 1, nn_rimwidth(ib_bdy)
+! DO ii = jpisdt(iseg), jpisft(iseg) - 1
+ DO ii = jpisdt(iseg), jpisft(iseg)
+ icount = icount + 1
+ nbidta(icount, igrd, ib_bdy) = ii
+ nbjdta(icount, igrd, ib_bdy) = jpjsob(iseg) + ir - 1
+ nbrdta(icount, igrd, ib_bdy) = ir
+ ENDDO
+ nbidta(icount, igrd, ib_bdy) = -ib_bdy ! Discount this point
+ nbjdta(icount, igrd, ib_bdy) = -ib_bdy ! Discount this point
+ ENDDO
+ !
+ ! ------------ V points -------------
+ igrd=3
+ icount=0
+ DO ir = 1, nn_rimwidth(ib_bdy)
+ DO ii = jpisdt(iseg), jpisft(iseg)
+ icount = icount + 1
+ nbidta(icount, igrd, ib_bdy) = ii
+ nbjdta(icount, igrd, ib_bdy) = jpjsob(iseg) + ir - 1
+ nbrdta(icount, igrd, ib_bdy) = ir
+ ENDDO
+ ENDDO
+ ENDDO
+
+ ! Deal with duplicated points
+ !-----------------------------
+ ! We assign negative indices to duplicated points (to remove them from bdy points to be updated)
+ ! if their distance to the bdy is greater than the other
+ ! If their distance are the same, just keep only one to avoid updating a point twice
+ DO igrd = 1, jpbgrd
+ DO ib_bdy1 = 1, nb_bdy
+ DO ib_bdy2 = 1, nb_bdy
+ IF (ib_bdy1/=ib_bdy2) THEN
+ DO ib1 = 1, nblendta(igrd,ib_bdy1)
+ DO ib2 = 1, nblendta(igrd,ib_bdy2)
+ IF ((nbidta(ib1, igrd, ib_bdy1)==nbidta(ib2, igrd, ib_bdy2)).AND. &
+ & (nbjdta(ib1, igrd, ib_bdy1)==nbjdta(ib2, igrd, ib_bdy2))) THEN
+! IF ((lwp).AND.(igrd==1)) WRITE(numout,*) ' found coincident point ji, jj:', &
+! & nbidta(ib1, igrd, ib_bdy1), &
+! & nbjdta(ib2, igrd, ib_bdy2)
+ ! keep only points with the lowest distance to boundary:
+ IF (nbrdta(ib1, igrd, ib_bdy1)<nbrdta(ib2, igrd, ib_bdy2)) THEN
+ nbidta(ib2, igrd, ib_bdy2) =-ib_bdy2
+ nbjdta(ib2, igrd, ib_bdy2) =-ib_bdy2
+ ELSEIF (nbrdta(ib1, igrd, ib_bdy1)>nbrdta(ib2, igrd, ib_bdy2)) THEN
+ nbidta(ib1, igrd, ib_bdy1) =-ib_bdy1
+ nbjdta(ib1, igrd, ib_bdy1) =-ib_bdy1
+ ! Arbitrary choice if distances are the same:
+ ELSE
+ nbidta(ib1, igrd, ib_bdy1) =-ib_bdy1
+ nbjdta(ib1, igrd, ib_bdy1) =-ib_bdy1
+ ENDIF
+ END IF
+ END DO
+ END DO
+ ENDIF
+ END DO
+ END DO
+ END DO
+
+ ! Work out dimensions of boundary data on each processor
+ ! ------------------------------------------------------
+
+ ! Rather assume that boundary data indices are given on global domain
+ ! TO BE DISCUSSED ?
+! iw = mig(1) + 1 ! if monotasking and no zoom, iw=2
+! ie = mig(1) + nlci-1 - 1 ! if monotasking and no zoom, ie=jpim1
+! is = mjg(1) + 1 ! if monotasking and no zoom, is=2
+! in = mjg(1) + nlcj-1 - 1 ! if monotasking and no zoom, in=jpjm1
+ iwe = mig(1) - 1 + 2 ! if monotasking and no zoom, iw=2
+ ies = mig(1) + nlci-1 - 1 ! if monotasking and no zoom, ie=jpim1
+ iso = mjg(1) - 1 + 2 ! if monotasking and no zoom, is=2
+ ino = mjg(1) + nlcj-1 - 1 ! if monotasking and no zoom, in=jpjm1
+
+ ALLOCATE( nbondi_bdy(nb_bdy))
+ ALLOCATE( nbondj_bdy(nb_bdy))
+ nbondi_bdy(:)=2
+ nbondj_bdy(:)=2
+ ALLOCATE( nbondi_bdy_b(nb_bdy))
+ ALLOCATE( nbondj_bdy_b(nb_bdy))
+ nbondi_bdy_b(:)=2
+ nbondj_bdy_b(:)=2
+
+ ! Work out dimensions of boundary data on each neighbour process
+ IF(nbondi == 0) THEN
+ iw_b(1) = 1 + nimppt(nowe+1)
+ ie_b(1) = 1 + nimppt(nowe+1)+nlcit(nowe+1)-3
+ is_b(1) = 1 + njmppt(nowe+1)
+ in_b(1) = 1 + njmppt(nowe+1)+nlcjt(nowe+1)-3
+
+ iw_b(2) = 1 + nimppt(noea+1)
+ ie_b(2) = 1 + nimppt(noea+1)+nlcit(noea+1)-3
+ is_b(2) = 1 + njmppt(noea+1)
+ in_b(2) = 1 + njmppt(noea+1)+nlcjt(noea+1)-3
+ ELSEIF(nbondi == 1) THEN
+ iw_b(1) = 1 + nimppt(nowe+1)
+ ie_b(1) = 1 + nimppt(nowe+1)+nlcit(nowe+1)-3
+ is_b(1) = 1 + njmppt(nowe+1)
+ in_b(1) = 1 + njmppt(nowe+1)+nlcjt(nowe+1)-3
+ ELSEIF(nbondi == -1) THEN
+ iw_b(2) = 1 + nimppt(noea+1)
+ ie_b(2) = 1 + nimppt(noea+1)+nlcit(noea+1)-3
+ is_b(2) = 1 + njmppt(noea+1)
+ in_b(2) = 1 + njmppt(noea+1)+nlcjt(noea+1)-3
+ ENDIF
+
+ IF(nbondj == 0) THEN
+ iw_b(3) = 1 + nimppt(noso+1)
+ ie_b(3) = 1 + nimppt(noso+1)+nlcit(noso+1)-3
+ is_b(3) = 1 + njmppt(noso+1)
+ in_b(3) = 1 + njmppt(noso+1)+nlcjt(noso+1)-3
+
+ iw_b(4) = 1 + nimppt(nono+1)
+ ie_b(4) = 1 + nimppt(nono+1)+nlcit(nono+1)-3
+ is_b(4) = 1 + njmppt(nono+1)
+ in_b(4) = 1 + njmppt(nono+1)+nlcjt(nono+1)-3
+ ELSEIF(nbondj == 1) THEN
+ iw_b(3) = 1 + nimppt(noso+1)
+ ie_b(3) = 1 + nimppt(noso+1)+nlcit(noso+1)-3
+ is_b(3) = 1 + njmppt(noso+1)
+ in_b(3) = 1 + njmppt(noso+1)+nlcjt(noso+1)-3
+ ELSEIF(nbondj == -1) THEN
+ iw_b(4) = 1 + nimppt(nono+1)
+ ie_b(4) = 1 + nimppt(nono+1)+nlcit(nono+1)-3
+ is_b(4) = 1 + njmppt(nono+1)
+ in_b(4) = 1 + njmppt(nono+1)+nlcjt(nono+1)-3
+ ENDIF
+
+ DO ib_bdy = 1, nb_bdy
+ DO igrd = 1, jpbgrd
+ icount = 0
+ icountr = 0
+ idx_bdy(ib_bdy)%nblen(igrd) = 0
+ idx_bdy(ib_bdy)%nblenrim(igrd) = 0
+ DO ib = 1, nblendta(igrd,ib_bdy)
+ ! check that data is in correct order in file
+ ibm1 = MAX(1,ib-1)
+ IF(lwp) THEN ! Since all procs read global data only need to do this check on one proc...
+ IF( nbrdta(ib,igrd,ib_bdy) < nbrdta(ibm1,igrd,ib_bdy) ) THEN
+ CALL ctl_stop('bdy_segs : ERROR : boundary data in file must be defined ', &
+ & ' in order of distance from edge nbr A utility for re-ordering ', &
+ & ' boundary coordinates and data files exists in the TOOLS/OBC directory')
+ ENDIF
+ ENDIF
+ ! check if point is in local domain
+ IF( nbidta(ib,igrd,ib_bdy) >= iwe .AND. nbidta(ib,igrd,ib_bdy) <= ies .AND. &
+ & nbjdta(ib,igrd,ib_bdy) >= iso .AND. nbjdta(ib,igrd,ib_bdy) <= ino ) THEN
+ !
+ icount = icount + 1
+ !
+ IF( nbrdta(ib,igrd,ib_bdy) == 1 ) icountr = icountr+1
+ ENDIF
+ ENDDO
+ idx_bdy(ib_bdy)%nblenrim(igrd) = icountr !: length of rim boundary data on each proc
+ idx_bdy(ib_bdy)%nblen (igrd) = icount !: length of boundary data on each proc
+ ENDDO ! igrd
+
+ ! Allocate index arrays for this boundary set
+ !--------------------------------------------
+ ilen1 = MAXVAL( idx_bdy(ib_bdy)%nblen(:) )
+ ALLOCATE( idx_bdy(ib_bdy)%nbi (ilen1,jpbgrd) )
+ ALLOCATE( idx_bdy(ib_bdy)%nbj (ilen1,jpbgrd) )
+ ALLOCATE( idx_bdy(ib_bdy)%nbr (ilen1,jpbgrd) )
+ ALLOCATE( idx_bdy(ib_bdy)%nbd (ilen1,jpbgrd) )
+ ALLOCATE( idx_bdy(ib_bdy)%nbdout(ilen1,jpbgrd) )
+ ALLOCATE( idx_bdy(ib_bdy)%nbmap (ilen1,jpbgrd) )
+ ALLOCATE( idx_bdy(ib_bdy)%nbw (ilen1,jpbgrd) )
+ ALLOCATE( idx_bdy(ib_bdy)%flagu (ilen1,jpbgrd) )
+ ALLOCATE( idx_bdy(ib_bdy)%flagv (ilen1,jpbgrd) )
+
+ ! Dispatch mapping indices and discrete distances on each processor
+ ! -----------------------------------------------------------------
+
+ com_east = 0
+ com_west = 0
+ com_south = 0
+ com_north = 0
+
+ com_east_b = 0
+ com_west_b = 0
+ com_south_b = 0
+ com_north_b = 0
+
+ DO igrd = 1, jpbgrd
+ icount = 0
+ ! Loop on rimwidth to ensure outermost points come first in the local arrays.
+ DO ir=1, nn_rimwidth(ib_bdy)
+ DO ib = 1, nblendta(igrd,ib_bdy)
+ ! check if point is in local domain and equals ir
+ IF( nbidta(ib,igrd,ib_bdy) >= iwe .AND. nbidta(ib,igrd,ib_bdy) <= ies .AND. &
+ & nbjdta(ib,igrd,ib_bdy) >= iso .AND. nbjdta(ib,igrd,ib_bdy) <= ino .AND. &
+ & nbrdta(ib,igrd,ib_bdy) == ir ) THEN
+ !
+ icount = icount + 1
+
+ ! Rather assume that boundary data indices are given on global domain
+ ! TO BE DISCUSSED ?
+! idx_bdy(ib_bdy)%nbi(icount,igrd) = nbidta(ib,igrd,ib_bdy)- mig(1)+1
+! idx_bdy(ib_bdy)%nbj(icount,igrd) = nbjdta(ib,igrd,ib_bdy)- mjg(1)+1
+ idx_bdy(ib_bdy)%nbi(icount,igrd) = nbidta(ib,igrd,ib_bdy)- mig(1)+1
+ idx_bdy(ib_bdy)%nbj(icount,igrd) = nbjdta(ib,igrd,ib_bdy)- mjg(1)+1
+ ! check if point has to be sent
+ ii = idx_bdy(ib_bdy)%nbi(icount,igrd)
+ ij = idx_bdy(ib_bdy)%nbj(icount,igrd)
+ if((com_east .ne. 1) .and. (ii == (nlci-1)) .and. (nbondi .le. 0)) then
+ com_east = 1
+ elseif((com_west .ne. 1) .and. (ii == 2) .and. (nbondi .ge. 0) .and. (nbondi .ne. 2)) then
+ com_west = 1
+ endif
+ if((com_south .ne. 1) .and. (ij == 2) .and. (nbondj .ge. 0) .and. (nbondj .ne. 2)) then
+ com_south = 1
+ elseif((com_north .ne. 1) .and. (ij == (nlcj-1)) .and. (nbondj .le. 0)) then
+ com_north = 1
+ endif
+ idx_bdy(ib_bdy)%nbr(icount,igrd) = nbrdta(ib,igrd,ib_bdy)
+ idx_bdy(ib_bdy)%nbmap(icount,igrd) = ib
+ ENDIF
+ ! check if point has to be received from a neighbour
+ IF(nbondi == 0) THEN
+ IF( nbidta(ib,igrd,ib_bdy) >= iw_b(1) .AND. nbidta(ib,igrd,ib_bdy) <= ie_b(1) .AND. &
+ & nbjdta(ib,igrd,ib_bdy) >= is_b(1) .AND. nbjdta(ib,igrd,ib_bdy) <= in_b(1) .AND. &
+ & nbrdta(ib,igrd,ib_bdy) == ir ) THEN
+ ii = nbidta(ib,igrd,ib_bdy)- iw_b(1)+2
+ if((com_west_b .ne. 1) .and. (ii == (nlcit(nowe+1)-1))) then
+ ij = nbjdta(ib,igrd,ib_bdy) - is_b(1)+2
+ if((ij == 2) .and. (nbondj == 0 .or. nbondj == 1)) then
+ com_south = 1
+ elseif((ij == nlcjt(nowe+1)-1) .and. (nbondj == 0 .or. nbondj == -1)) then
+ com_north = 1
+ endif
+ com_west_b = 1
+ endif
+ ENDIF
+ IF( nbidta(ib,igrd,ib_bdy) >= iw_b(2) .AND. nbidta(ib,igrd,ib_bdy) <= ie_b(2) .AND. &
+ & nbjdta(ib,igrd,ib_bdy) >= is_b(2) .AND. nbjdta(ib,igrd,ib_bdy) <= in_b(2) .AND. &
+ & nbrdta(ib,igrd,ib_bdy) == ir ) THEN
+ ii = nbidta(ib,igrd,ib_bdy)- iw_b(2)+2
+ if((com_east_b .ne. 1) .and. (ii == 2)) then
+ ij = nbjdta(ib,igrd,ib_bdy) - is_b(2)+2
+ if((ij == 2) .and. (nbondj == 0 .or. nbondj == 1)) then
+ com_south = 1
+ elseif((ij == nlcjt(noea+1)-1) .and. (nbondj == 0 .or. nbondj == -1)) then
+ com_north = 1
+ endif
+ com_east_b = 1
+ endif
+ ENDIF
+ ELSEIF(nbondi == 1) THEN
+ IF( nbidta(ib,igrd,ib_bdy) >= iw_b(1) .AND. nbidta(ib,igrd,ib_bdy) <= ie_b(1) .AND. &
+ & nbjdta(ib,igrd,ib_bdy) >= is_b(1) .AND. nbjdta(ib,igrd,ib_bdy) <= in_b(1) .AND. &
+ & nbrdta(ib,igrd,ib_bdy) == ir ) THEN
+ ii = nbidta(ib,igrd,ib_bdy)- iw_b(1)+2
+ if((com_west_b .ne. 1) .and. (ii == (nlcit(nowe+1)-1))) then
+ ij = nbjdta(ib,igrd,ib_bdy) - is_b(1)+2
+ if((ij == 2) .and. (nbondj == 0 .or. nbondj == 1)) then
+ com_south = 1
+ elseif((ij == nlcjt(nowe+1)-1) .and. (nbondj == 0 .or. nbondj == -1)) then
+ com_north = 1
+ endif
+ com_west_b = 1
+ endif
+ ENDIF
+ ELSEIF(nbondi == -1) THEN
+ IF( nbidta(ib,igrd,ib_bdy) >= iw_b(2) .AND. nbidta(ib,igrd,ib_bdy) <= ie_b(2) .AND. &
+ & nbjdta(ib,igrd,ib_bdy) >= is_b(2) .AND. nbjdta(ib,igrd,ib_bdy) <= in_b(2) .AND. &
+ & nbrdta(ib,igrd,ib_bdy) == ir ) THEN
+ ii = nbidta(ib,igrd,ib_bdy)- iw_b(2)+2
+ if((com_east_b .ne. 1) .and. (ii == 2)) then
+ ij = nbjdta(ib,igrd,ib_bdy) - is_b(2)+2
+ if((ij == 2) .and. (nbondj == 0 .or. nbondj == 1)) then
+ com_south = 1
+ elseif((ij == nlcjt(noea+1)-1) .and. (nbondj == 0 .or. nbondj == -1)) then
+ com_north = 1
+ endif
+ com_east_b = 1
+ endif
+ ENDIF
+ ENDIF
+ IF(nbondj == 0) THEN
+ IF(com_north_b .ne. 1 .AND. (nbidta(ib,igrd,ib_bdy) == iw_b(4)-1 &
+ & .OR. nbidta(ib,igrd,ib_bdy) == ie_b(4)+1) .AND. &
+ & nbjdta(ib,igrd,ib_bdy) == is_b(4) .AND. nbrdta(ib,igrd,ib_bdy) == ir) THEN
+ com_north_b = 1
+ ENDIF
+ IF(com_south_b .ne. 1 .AND. (nbidta(ib,igrd,ib_bdy) == iw_b(3)-1 &
+ &.OR. nbidta(ib,igrd,ib_bdy) == ie_b(3)+1) .AND. &
+ & nbjdta(ib,igrd,ib_bdy) == in_b(3) .AND. nbrdta(ib,igrd,ib_bdy) == ir) THEN
+ com_south_b = 1
+ ENDIF
+ IF( nbidta(ib,igrd,ib_bdy) >= iw_b(3) .AND. nbidta(ib,igrd,ib_bdy) <= ie_b(3) .AND. &
+ & nbjdta(ib,igrd,ib_bdy) >= is_b(3) .AND. nbjdta(ib,igrd,ib_bdy) <= in_b(3) .AND. &
+ & nbrdta(ib,igrd,ib_bdy) == ir ) THEN
+ ij = nbjdta(ib,igrd,ib_bdy)- is_b(3)+2
+ if((com_south_b .ne. 1) .and. (ij == (nlcjt(noso+1)-1))) then
+ com_south_b = 1
+ endif
+ ENDIF
+ IF( nbidta(ib,igrd,ib_bdy) >= iw_b(4) .AND. nbidta(ib,igrd,ib_bdy) <= ie_b(4) .AND. &
+ & nbjdta(ib,igrd,ib_bdy) >= is_b(4) .AND. nbjdta(ib,igrd,ib_bdy) <= in_b(4) .AND. &
+ & nbrdta(ib,igrd,ib_bdy) == ir ) THEN
+ ij = nbjdta(ib,igrd,ib_bdy)- is_b(4)+2
+ if((com_north_b .ne. 1) .and. (ij == 2)) then
+ com_north_b = 1
+ endif
+ ENDIF
+ ELSEIF(nbondj == 1) THEN
+ IF( com_south_b .ne. 1 .AND. (nbidta(ib,igrd,ib_bdy) == iw_b(3)-1 .OR. &
+ & nbidta(ib,igrd,ib_bdy) == ie_b(3)+1) .AND. &
+ & nbjdta(ib,igrd,ib_bdy) == in_b(3) .AND. nbrdta(ib,igrd,ib_bdy) == ir) THEN
+ com_south_b = 1
+ ENDIF
+ IF( nbidta(ib,igrd,ib_bdy) >= iw_b(3) .AND. nbidta(ib,igrd,ib_bdy) <= ie_b(3) .AND. &
+ & nbjdta(ib,igrd,ib_bdy) >= is_b(3) .AND. nbjdta(ib,igrd,ib_bdy) <= in_b(3) .AND. &
+ & nbrdta(ib,igrd,ib_bdy) == ir ) THEN
+ ij = nbjdta(ib,igrd,ib_bdy)- is_b(3)+2
+ if((com_south_b .ne. 1) .and. (ij == (nlcjt(noso+1)-1))) then
+ com_south_b = 1
+ endif
+ ENDIF
+ ELSEIF(nbondj == -1) THEN
+ IF(com_north_b .ne. 1 .AND. (nbidta(ib,igrd,ib_bdy) == iw_b(4)-1 &
+ & .OR. nbidta(ib,igrd,ib_bdy) == ie_b(4)+1) .AND. &
+ & nbjdta(ib,igrd,ib_bdy) == is_b(4) .AND. nbrdta(ib,igrd,ib_bdy) == ir) THEN
+ com_north_b = 1
+ ENDIF
+ IF( nbidta(ib,igrd,ib_bdy) >= iw_b(4) .AND. nbidta(ib,igrd,ib_bdy) <= ie_b(4) .AND. &
+ & nbjdta(ib,igrd,ib_bdy) >= is_b(4) .AND. nbjdta(ib,igrd,ib_bdy) <= in_b(4) .AND. &
+ & nbrdta(ib,igrd,ib_bdy) == ir ) THEN
+ ij = nbjdta(ib,igrd,ib_bdy)- is_b(4)+2
+ if((com_north_b .ne. 1) .and. (ij == 2)) then
+ com_north_b = 1
+ endif
+ ENDIF
+ ENDIF
+ ENDDO
+ ENDDO
+ ENDDO
+
+ ! definition of the i- and j- direction local boundaries arrays used for sending the boundaries
+ IF( (com_east == 1) .and. (com_west == 1) ) THEN ; nbondi_bdy(ib_bdy) = 0
+ ELSEIF( (com_east == 1) .and. (com_west == 0) ) THEN ; nbondi_bdy(ib_bdy) = -1
+ ELSEIF( (com_east == 0) .and. (com_west == 1) ) THEN ; nbondi_bdy(ib_bdy) = 1
+ ENDIF
+ IF( (com_north == 1) .and. (com_south == 1) ) THEN ; nbondj_bdy(ib_bdy) = 0
+ ELSEIF( (com_north == 1) .and. (com_south == 0) ) THEN ; nbondj_bdy(ib_bdy) = -1
+ ELSEIF( (com_north == 0) .and. (com_south == 1) ) THEN ; nbondj_bdy(ib_bdy) = 1
+ ENDIF
+
+ ! definition of the i- and j- direction local boundaries arrays used for receiving the boundaries
+ IF( (com_east_b == 1) .and. (com_west_b == 1) ) THEN ; nbondi_bdy_b(ib_bdy) = 0
+ ELSEIF( (com_east_b == 1) .and. (com_west_b == 0) ) THEN ; nbondi_bdy_b(ib_bdy) = -1
+ ELSEIF( (com_east_b == 0) .and. (com_west_b == 1) ) THEN ; nbondi_bdy_b(ib_bdy) = 1
+ ENDIF
+ IF( (com_north_b == 1) .and. (com_south_b == 1) ) THEN ; nbondj_bdy_b(ib_bdy) = 0
+ ELSEIF( (com_north_b == 1) .and. (com_south_b == 0) ) THEN ; nbondj_bdy_b(ib_bdy) = -1
+ ELSEIF( (com_north_b == 0) .and. (com_south_b == 1) ) THEN ; nbondj_bdy_b(ib_bdy) = 1
+ ENDIF
+
+ ! Compute rim weights for FRS scheme
+ ! ----------------------------------
+ DO igrd = 1, jpbgrd
+ DO ib = 1, idx_bdy(ib_bdy)%nblen(igrd)
+ nbr => idx_bdy(ib_bdy)%nbr(ib,igrd)
+ idx_bdy(ib_bdy)%nbw(ib,igrd) = 1.- TANH( REAL( nbr - 1 ) *0.5 ) ! tanh formulation
+! idx_bdy(ib_bdy)%nbw(ib,igrd) = (REAL(nn_rimwidth(ib_bdy)+1-nbr)/REAL(nn_rimwidth(ib_bdy)))**2. ! quadratic
+! idx_bdy(ib_bdy)%nbw(ib,igrd) = REAL(nn_rimwidth(ib_bdy)+1-nbr)/REAL(nn_rimwidth(ib_bdy)) ! linear
+ END DO
+ END DO
+
+ ! Compute damping coefficients
+ ! ----------------------------
+ DO igrd = 1, jpbgrd
+ DO ib = 1, idx_bdy(ib_bdy)%nblen(igrd)
+ nbr => idx_bdy(ib_bdy)%nbr(ib,igrd)
+ idx_bdy(ib_bdy)%nbd(ib,igrd) = 1. / ( rn_time_dmp(ib_bdy) * rday ) &
+ & *(REAL(nn_rimwidth(ib_bdy)+1-nbr)/REAL(nn_rimwidth(ib_bdy)))**2. ! quadratic
+ idx_bdy(ib_bdy)%nbdout(ib,igrd) = 1. / ( rn_time_dmp_out(ib_bdy) * rday ) &
+ & *(REAL(nn_rimwidth(ib_bdy)+1-nbr)/REAL(nn_rimwidth(ib_bdy)))**2. ! quadratic
+ END DO
+ END DO
+
+ ENDDO
+
+ ! ------------------------------------------------------
+ ! Initialise masks and find normal/tangential directions
+ ! ------------------------------------------------------
+
+ ! Read global 2D mask at T-points: bdytmask
+ ! -----------------------------------------
+ ! bdytmask = 1 on the computational domain AND on open boundaries
+ ! = 0 elsewhere
+
+ bdytmask(:,:) = ssmask(:,:)
+
+ ! we need to derive mask on U and V grid from mask on T grid here.
+ bdyumask(:,:) = 0._wp
+ bdyvmask(:,:) = 0._wp
+ DO ij = 1, jpjm1
+ DO ii = 1, jpim1
+ bdyumask(ii,ij) = bdytmask(ii,ij) * bdytmask(ii+1, ij )
+ bdyvmask(ii,ij) = bdytmask(ii,ij) * bdytmask(ii ,ij+1)
+ END DO
+ END DO
+ CALL lbc_lnk( bdyumask(:,:), 'U', 1. ) ; CALL lbc_lnk( bdyvmask(:,:), 'V', 1. ) ! Lateral boundary cond.
+
+ ! bdy masks are now set to zero on boundary points:
+ !
+ igrd = 1
+ DO ib_bdy = 1, nb_bdy
+ DO ib = 1, idx_bdy(ib_bdy)%nblenrim(igrd)
+ bdytmask(idx_bdy(ib_bdy)%nbi(ib,igrd), idx_bdy(ib_bdy)%nbj(ib,igrd)) = 0._wp
+ END DO
+ END DO
+ !
+ igrd = 2
+ DO ib_bdy = 1, nb_bdy
+ DO ib = 1, idx_bdy(ib_bdy)%nblenrim(igrd)
+ bdyumask(idx_bdy(ib_bdy)%nbi(ib,igrd), idx_bdy(ib_bdy)%nbj(ib,igrd)) = 0._wp
+ END DO
+ END DO
+ !
+ igrd = 3
+ DO ib_bdy = 1, nb_bdy
+ DO ib = 1, idx_bdy(ib_bdy)%nblenrim(igrd)
+ bdyvmask(idx_bdy(ib_bdy)%nbi(ib,igrd), idx_bdy(ib_bdy)%nbj(ib,igrd)) = 0._wp
+ ENDDO
+ ENDDO
+
+ ! For the flagu/flagv calculation below we require a version of fmask without
+ ! the land boundary condition (shlat) included:
+ CALL wrk_alloc(jpi,jpj, zfmask )
+ DO ij = 2, jpjm1
+ DO ii = 2, jpim1
+ zfmask(ii,ij) = tmask(ii,ij ,1) * tmask(ii+1,ij ,1) &
+ & * tmask(ii,ij+1,1) * tmask(ii+1,ij+1,1)
+ END DO
+ END DO
+
+ ! Lateral boundary conditions
+ CALL lbc_lnk( zfmask , 'F', 1. )
+ CALL lbc_lnk( fmask , 'F', 1. ) ; CALL lbc_lnk( bdytmask(:,:), 'T', 1. )
+ CALL lbc_lnk( bdyumask(:,:), 'U', 1. ) ; CALL lbc_lnk( bdyvmask(:,:), 'V', 1. )
+
+ DO ib_bdy = 1, nb_bdy ! Indices and directions of rim velocity components
+
+ idx_bdy(ib_bdy)%flagu(:,:) = 0._wp
+ idx_bdy(ib_bdy)%flagv(:,:) = 0._wp
+ icount = 0
+
+ ! Calculate relationship of U direction to the local orientation of the boundary
+ ! flagu = -1 : u component is normal to the dynamical boundary and its direction is outward
+ ! flagu = 0 : u is tangential
+ ! flagu = 1 : u is normal to the boundary and is direction is inward
+
+ DO igrd = 1,jpbgrd
+ SELECT CASE( igrd )
+ CASE( 1 ) ; pmask => umask (:,:,1) ; i_offset = 0
+ CASE( 2 ) ; pmask => bdytmask(:,:) ; i_offset = 1
+ CASE( 3 ) ; pmask => zfmask (:,:) ; i_offset = 0
+ END SELECT
+ icount = 0
+ DO ib = 1, idx_bdy(ib_bdy)%nblenrim(igrd)
+ nbi => idx_bdy(ib_bdy)%nbi(ib,igrd)
+ nbj => idx_bdy(ib_bdy)%nbj(ib,igrd)
+ zefl = pmask(nbi+i_offset-1,nbj)
+ zwfl = pmask(nbi+i_offset,nbj)
+ ! This error check only works if you are using the bdyXmask arrays
+ IF( i_offset == 1 .and. zefl + zwfl == 2 ) THEN
+ icount = icount + 1
+ IF(lwp) WRITE(numout,*) 'Problem with igrd = ',igrd,' at (global) nbi, nbj : ',mig(nbi),mjg(nbj)
+ ELSE
+ idx_bdy(ib_bdy)%flagu(ib,igrd) = -zefl + zwfl
+ ENDIF
+ END DO
+ IF( icount /= 0 ) THEN
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) ' E R R O R : Some ',cgrid(igrd),' grid points,', &
+ ' are not boundary points (flagu calculation). Check nbi, nbj, indices for boundary set ',ib_bdy
+ IF(lwp) WRITE(numout,*) ' ========== '
+ IF(lwp) WRITE(numout,*)
+ nstop = nstop + 1
+ ENDIF
+ END DO
+
+ ! Calculate relationship of V direction to the local orientation of the boundary
+ ! flagv = -1 : v component is normal to the dynamical boundary but its direction is outward
+ ! flagv = 0 : v is tangential
+ ! flagv = 1 : v is normal to the boundary and is direction is inward
+
+ DO igrd = 1, jpbgrd
+ SELECT CASE( igrd )
+ CASE( 1 ) ; pmask => vmask (:,:,1) ; j_offset = 0
+ CASE( 2 ) ; pmask => zfmask(:,:) ; j_offset = 0
+ CASE( 3 ) ; pmask => bdytmask ; j_offset = 1
+ END SELECT
+ icount = 0
+ DO ib = 1, idx_bdy(ib_bdy)%nblenrim(igrd)
+ nbi => idx_bdy(ib_bdy)%nbi(ib,igrd)
+ nbj => idx_bdy(ib_bdy)%nbj(ib,igrd)
+ znfl = pmask(nbi,nbj+j_offset-1)
+ zsfl = pmask(nbi,nbj+j_offset )
+ ! This error check only works if you are using the bdyXmask arrays
+ IF( j_offset == 1 .and. znfl + zsfl == 2 ) THEN
+ IF(lwp) WRITE(numout,*) 'Problem with igrd = ',igrd,' at (global) nbi, nbj : ',mig(nbi),mjg(nbj)
+ icount = icount + 1
+ ELSE
+ idx_bdy(ib_bdy)%flagv(ib,igrd) = -znfl + zsfl
+ END IF
+ END DO
+ IF( icount /= 0 ) THEN
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) ' E R R O R : Some ',cgrid(igrd),' grid points,', &
+ ' are not boundary points (flagv calculation). Check nbi, nbj, indices for boundary set ',ib_bdy
+ IF(lwp) WRITE(numout,*) ' ========== '
+ IF(lwp) WRITE(numout,*)
+ nstop = nstop + 1
+ ENDIF
+ END DO
+ !
+ END DO
+
+ ! Compute total lateral surface for volume correction:
+ ! ----------------------------------------------------
+ ! JC: this must be done at each time step with non-linear free surface
+ bdysurftot = 0._wp
+ IF( ln_vol ) THEN
+ igrd = 2 ! Lateral surface at U-points
+ DO ib_bdy = 1, nb_bdy
+ DO ib = 1, idx_bdy(ib_bdy)%nblenrim(igrd)
+ nbi => idx_bdy(ib_bdy)%nbi(ib,igrd)
+ nbj => idx_bdy(ib_bdy)%nbj(ib,igrd)
+ flagu => idx_bdy(ib_bdy)%flagu(ib,igrd)
+ bdysurftot = bdysurftot + hu_n (nbi , nbj) &
+ & * e2u (nbi , nbj) * ABS( flagu ) &
+ & * tmask_i(nbi , nbj) &
+ & * tmask_i(nbi+1, nbj)
+ END DO
+ END DO
+
+ igrd=3 ! Add lateral surface at V-points
+ DO ib_bdy = 1, nb_bdy
+ DO ib = 1, idx_bdy(ib_bdy)%nblenrim(igrd)
+ nbi => idx_bdy(ib_bdy)%nbi(ib,igrd)
+ nbj => idx_bdy(ib_bdy)%nbj(ib,igrd)
+ flagv => idx_bdy(ib_bdy)%flagv(ib,igrd)
+ bdysurftot = bdysurftot + hv_n (nbi, nbj ) &
+ & * e1v (nbi, nbj ) * ABS( flagv ) &
+ & * tmask_i(nbi, nbj ) &
+ & * tmask_i(nbi, nbj+1)
+ END DO
+ END DO
+ !
+ IF( lk_mpp ) CALL mpp_sum( bdysurftot ) ! sum over the global domain
+ END IF
+ !
+ ! Tidy up
+ !--------
+ IF( nb_bdy>0 ) DEALLOCATE( nbidta, nbjdta, nbrdta )
+ !
+ CALL wrk_dealloc(jpi,jpj, zfmask )
+ !
+ IF( nn_timing == 1 ) CALL timing_stop('bdy_segs')
+ !
+ END SUBROUTINE bdy_segs
+
+ SUBROUTINE bdy_ctl_seg
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE bdy_ctl_seg ***
+ !!
+ !! ** Purpose : Check straight open boundary segments location
+ !!
+ !! ** Method : - Look for open boundary corners
+ !! - Check that segments start or end on land
+ !!----------------------------------------------------------------------
+ INTEGER :: ib, ib1, ib2, ji ,jj, itest
+ INTEGER, DIMENSION(jp_nseg,2) :: icorne, icornw, icornn, icorns
+ REAL(wp), DIMENSION(2) :: ztestmask
+ !!----------------------------------------------------------------------
+ !
+ IF (lwp) WRITE(numout,*) ' '
+ IF (lwp) WRITE(numout,*) 'bdy_ctl_seg: Check analytical segments'
+ IF (lwp) WRITE(numout,*) '~~~~~~~~~~~~'
+ !
+ IF(lwp) WRITE(numout,*) 'Number of east segments : ', nbdysege
+ IF(lwp) WRITE(numout,*) 'Number of west segments : ', nbdysegw
+ IF(lwp) WRITE(numout,*) 'Number of north segments : ', nbdysegn
+ IF(lwp) WRITE(numout,*) 'Number of south segments : ', nbdysegs
+ ! 1. Check bounds
+ !----------------
+ DO ib = 1, nbdysegn
+ IF (lwp) WRITE(numout,*) '**check north seg bounds pckg: ', npckgn(ib)
+ IF ((jpjnob(ib).ge.jpjglo-1).or.&
+ &(jpjnob(ib).le.1)) CALL ctl_stop( 'nbdyind out of domain' )
+ IF (jpindt(ib).ge.jpinft(ib)) CALL ctl_stop( 'Bdy start index is greater than end index' )
+ IF (jpindt(ib).le.1 ) CALL ctl_stop( 'Start index out of domain' )
+ IF (jpinft(ib).ge.jpiglo) CALL ctl_stop( 'End index out of domain' )
+ END DO
+ !
+ DO ib = 1, nbdysegs
+ IF (lwp) WRITE(numout,*) '**check south seg bounds pckg: ', npckgs(ib)
+ IF ((jpjsob(ib).ge.jpjglo-1).or.&
+ &(jpjsob(ib).le.1)) CALL ctl_stop( 'nbdyind out of domain' )
+ IF (jpisdt(ib).ge.jpisft(ib)) CALL ctl_stop( 'Bdy start index is greater than end index' )
+ IF (jpisdt(ib).le.1 ) CALL ctl_stop( 'Start index out of domain' )
+ IF (jpisft(ib).ge.jpiglo) CALL ctl_stop( 'End index out of domain' )
+ END DO
+ !
+ DO ib = 1, nbdysege
+ IF (lwp) WRITE(numout,*) '**check east seg bounds pckg: ', npckge(ib)
+ IF ((jpieob(ib).ge.jpiglo-1).or.&
+ &(jpieob(ib).le.1)) CALL ctl_stop( 'nbdyind out of domain' )
+ IF (jpjedt(ib).ge.jpjeft(ib)) CALL ctl_stop( 'Bdy start index is greater than end index' )
+ IF (jpjedt(ib).le.1 ) CALL ctl_stop( 'Start index out of domain' )
+ IF (jpjeft(ib).ge.jpjglo) CALL ctl_stop( 'End index out of domain' )
+ END DO
+ !
+ DO ib = 1, nbdysegw
+ IF (lwp) WRITE(numout,*) '**check west seg bounds pckg: ', npckgw(ib)
+ IF ((jpiwob(ib).ge.jpiglo-1).or.&
+ &(jpiwob(ib).le.1)) CALL ctl_stop( 'nbdyind out of domain' )
+ IF (jpjwdt(ib).ge.jpjwft(ib)) CALL ctl_stop( 'Bdy start index is greater than end index' )
+ IF (jpjwdt(ib).le.1 ) CALL ctl_stop( 'Start index out of domain' )
+ IF (jpjwft(ib).ge.jpjglo) CALL ctl_stop( 'End index out of domain' )
+ ENDDO
+ !
+ !
+ ! 2. Look for segment crossings
+ !------------------------------
+ IF (lwp) WRITE(numout,*) '**Look for segments corners :'
+ !
+ itest = 0 ! corner number
+ !
+ ! flag to detect if start or end of open boundary belongs to a corner
+ ! if not (=0), it must be on land.
+ ! if a corner is detected, save bdy package number for further tests
+ icorne(:,:)=0. ; icornw(:,:)=0. ; icornn(:,:)=0. ; icorns(:,:)=0.
+ ! South/West crossings
+ IF ((nbdysegw > 0).AND.(nbdysegs > 0)) THEN
+ DO ib1 = 1, nbdysegw
+ DO ib2 = 1, nbdysegs
+ IF (( jpisdt(ib2)<=jpiwob(ib1)).AND. &
+ & ( jpisft(ib2)>=jpiwob(ib1)).AND. &
+ & ( jpjwdt(ib1)<=jpjsob(ib2)).AND. &
+ & ( jpjwft(ib1)>=jpjsob(ib2))) THEN
+ IF ((jpjwdt(ib1)==jpjsob(ib2)).AND.(jpisdt(ib2)==jpiwob(ib1))) THEN
+ ! We have a possible South-West corner
+! WRITE(numout,*) ' Found a South-West corner at (i,j): ', jpisdt(ib2), jpjwdt(ib1)
+! WRITE(numout,*) ' between segments: ', npckgw(ib1), npckgs(ib2)
+ icornw(ib1,1) = npckgs(ib2)
+ icorns(ib2,1) = npckgw(ib1)
+ ELSEIF ((jpisft(ib2)==jpiwob(ib1)).AND.(jpjwft(ib1)==jpjsob(ib2))) THEN
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) ' E R R O R : Found an acute open boundary corner at point (i,j)= ', &
+ & jpisft(ib2), jpjwft(ib1)
+ IF(lwp) WRITE(numout,*) ' ========== Not allowed yet'
+ IF(lwp) WRITE(numout,*) ' Crossing problem with West segment: ',npckgw(ib1), &
+ & ' and South segment: ',npckgs(ib2)
+ IF(lwp) WRITE(numout,*)
+ nstop = nstop + 1
+ ELSE
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) ' E R R O R : Check South and West Open boundary indices'
+ IF(lwp) WRITE(numout,*) ' ========== Crossing problem with West segment: ',npckgw(ib1) , &
+ & ' and South segment: ',npckgs(ib2)
+ IF(lwp) WRITE(numout,*)
+ nstop = nstop+1
+ END IF
+ END IF
+ END DO
+ END DO
+ END IF
+ !
+ ! South/East crossings
+ IF ((nbdysege > 0).AND.(nbdysegs > 0)) THEN
+ DO ib1 = 1, nbdysege
+ DO ib2 = 1, nbdysegs
+ IF (( jpisdt(ib2)<=jpieob(ib1)+1).AND. &
+ & ( jpisft(ib2)>=jpieob(ib1)+1).AND. &
+ & ( jpjedt(ib1)<=jpjsob(ib2) ).AND. &
+ & ( jpjeft(ib1)>=jpjsob(ib2) )) THEN
+ IF ((jpjedt(ib1)==jpjsob(ib2)).AND.(jpisft(ib2)==jpieob(ib1)+1)) THEN
+ ! We have a possible South-East corner
+! WRITE(numout,*) ' Found a South-East corner at (i,j): ', jpisft(ib2), jpjedt(ib1)
+! WRITE(numout,*) ' between segments: ', npckge(ib1), npckgs(ib2)
+ icorne(ib1,1) = npckgs(ib2)
+ icorns(ib2,2) = npckge(ib1)
+ ELSEIF ((jpjeft(ib1)==jpjsob(ib2)).AND.(jpisdt(ib2)==jpieob(ib1)+1)) THEN
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) ' E R R O R : Found an acute open boundary corner at point (i,j)= ', &
+ & jpisdt(ib2), jpjeft(ib1)
+ IF(lwp) WRITE(numout,*) ' ========== Not allowed yet'
+ IF(lwp) WRITE(numout,*) ' Crossing problem with East segment: ',npckge(ib1), &
+ & ' and South segment: ',npckgs(ib2)
+ IF(lwp) WRITE(numout,*)
+ nstop = nstop + 1
+ ELSE
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) ' E R R O R : Check South and East Open boundary indices'
+ IF(lwp) WRITE(numout,*) ' ========== Crossing problem with East segment: ',npckge(ib1), &
+ & ' and South segment: ',npckgs(ib2)
+ IF(lwp) WRITE(numout,*)
+ nstop = nstop + 1
+ END IF
+ END IF
+ END DO
+ END DO
+ END IF
+ !
+ ! North/West crossings
+ IF ((nbdysegn > 0).AND.(nbdysegw > 0)) THEN
+ DO ib1 = 1, nbdysegw
+ DO ib2 = 1, nbdysegn
+ IF (( jpindt(ib2)<=jpiwob(ib1) ).AND. &
+ & ( jpinft(ib2)>=jpiwob(ib1) ).AND. &
+ & ( jpjwdt(ib1)<=jpjnob(ib2)+1).AND. &
+ & ( jpjwft(ib1)>=jpjnob(ib2)+1)) THEN
+ IF ((jpjwft(ib1)==jpjnob(ib2)+1).AND.(jpindt(ib2)==jpiwob(ib1))) THEN
+ ! We have a possible North-West corner
+! WRITE(numout,*) ' Found a North-West corner at (i,j): ', jpindt(ib2), jpjwft(ib1)
+! WRITE(numout,*) ' between segments: ', npckgw(ib1), npckgn(ib2)
+ icornw(ib1,2) = npckgn(ib2)
+ icornn(ib2,1) = npckgw(ib1)
+ ELSEIF ((jpjwdt(ib1)==jpjnob(ib2)+1).AND.(jpinft(ib2)==jpiwob(ib1))) THEN
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) ' E R R O R : Found an acute open boundary corner at point (i,j)= ', &
+ & jpinft(ib2), jpjwdt(ib1)
+ IF(lwp) WRITE(numout,*) ' ========== Not allowed yet'
+ IF(lwp) WRITE(numout,*) ' Crossing problem with West segment: ',npckgw(ib1), &
+ & ' and North segment: ',npckgn(ib2)
+ IF(lwp) WRITE(numout,*)
+ nstop = nstop + 1
+ ELSE
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) ' E R R O R : Check North and West Open boundary indices'
+ IF(lwp) WRITE(numout,*) ' ========== Crossing problem with West segment: ',npckgw(ib1), &
+ & ' and North segment: ',npckgn(ib2)
+ IF(lwp) WRITE(numout,*)
+ nstop = nstop + 1
+ END IF
+ END IF
+ END DO
+ END DO
+ END IF
+ !
+ ! North/East crossings
+ IF ((nbdysegn > 0).AND.(nbdysege > 0)) THEN
+ DO ib1 = 1, nbdysege
+ DO ib2 = 1, nbdysegn
+ IF (( jpindt(ib2)<=jpieob(ib1)+1).AND. &
+ & ( jpinft(ib2)>=jpieob(ib1)+1).AND. &
+ & ( jpjedt(ib1)<=jpjnob(ib2)+1).AND. &
+ & ( jpjeft(ib1)>=jpjnob(ib2)+1)) THEN
+ IF ((jpjeft(ib1)==jpjnob(ib2)+1).AND.(jpinft(ib2)==jpieob(ib1)+1)) THEN
+ ! We have a possible North-East corner
+! WRITE(numout,*) ' Found a North-East corner at (i,j): ', jpinft(ib2), jpjeft(ib1)
+! WRITE(numout,*) ' between segments: ', npckge(ib1), npckgn(ib2)
+ icorne(ib1,2) = npckgn(ib2)
+ icornn(ib2,2) = npckge(ib1)
+ ELSEIF ((jpjedt(ib1)==jpjnob(ib2)+1).AND.(jpindt(ib2)==jpieob(ib1)+1)) THEN
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) ' E R R O R : Found an acute open boundary corner at point (i,j)= ', &
+ & jpindt(ib2), jpjedt(ib1)
+ IF(lwp) WRITE(numout,*) ' ========== Not allowed yet'
+ IF(lwp) WRITE(numout,*) ' Crossing problem with East segment: ',npckge(ib1), &
+ & ' and North segment: ',npckgn(ib2)
+ IF(lwp) WRITE(numout,*)
+ nstop = nstop + 1
+ ELSE
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) ' E R R O R : Check North and East Open boundary indices'
+ IF(lwp) WRITE(numout,*) ' ========== Crossing problem with East segment: ',npckge(ib1), &
+ & ' and North segment: ',npckgn(ib2)
+ IF(lwp) WRITE(numout,*)
+ nstop = nstop + 1
+ END IF
+ END IF
+ END DO
+ END DO
+ END IF
+ !
+ ! 3. Check if segment extremities are on land
+ !--------------------------------------------
+ !
+ ! West segments
+ DO ib = 1, nbdysegw
+ ! get mask at boundary extremities:
+ ztestmask(1:2)=0.
+ DO ji = 1, jpi
+ DO jj = 1, jpj
+ IF (((ji + nimpp - 1) == jpiwob(ib)).AND. &
+ & ((jj + njmpp - 1) == jpjwdt(ib))) ztestmask(1)=tmask(ji,jj,1)
+ IF (((ji + nimpp - 1) == jpiwob(ib)).AND. &
+ & ((jj + njmpp - 1) == jpjwft(ib))) ztestmask(2)=tmask(ji,jj,1)
+ END DO
+ END DO
+ IF( lk_mpp ) CALL mpp_sum( ztestmask, 2 ) ! sum over the global domain
+
+ IF (ztestmask(1)==1) THEN
+ IF (icornw(ib,1)==0) THEN
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) ' E R R O R : Open boundary segment ', npckgw(ib)
+ IF(lwp) WRITE(numout,*) ' ========== does not start on land or on a corner'
+ IF(lwp) WRITE(numout,*)
+ nstop = nstop + 1
+ ELSE
+ ! This is a corner
+ IF(lwp) WRITE(numout,*) 'Found a South-West corner at (i,j): ', jpiwob(ib), jpjwdt(ib)
+ CALL bdy_ctl_corn(npckgw(ib), icornw(ib,1))
+ itest=itest+1
+ ENDIF
+ ENDIF
+ IF (ztestmask(2)==1) THEN
+ IF (icornw(ib,2)==0) THEN
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) ' E R R O R : Open boundary segment ', npckgw(ib)
+ IF(lwp) WRITE(numout,*) ' ========== does not end on land or on a corner'
+ IF(lwp) WRITE(numout,*)
+ nstop = nstop + 1
+ ELSE
+ ! This is a corner
+ IF(lwp) WRITE(numout,*) 'Found a North-West corner at (i,j): ', jpiwob(ib), jpjwft(ib)
+ CALL bdy_ctl_corn(npckgw(ib), icornw(ib,2))
+ itest=itest+1
+ ENDIF
+ ENDIF
+ END DO
+ !
+ ! East segments
+ DO ib = 1, nbdysege
+ ! get mask at boundary extremities:
+ ztestmask(1:2)=0.
+ DO ji = 1, jpi
+ DO jj = 1, jpj
+ IF (((ji + nimpp - 1) == jpieob(ib)+1).AND. &
+ & ((jj + njmpp - 1) == jpjedt(ib))) ztestmask(1)=tmask(ji,jj,1)
+ IF (((ji + nimpp - 1) == jpieob(ib)+1).AND. &
+ & ((jj + njmpp - 1) == jpjeft(ib))) ztestmask(2)=tmask(ji,jj,1)
+ END DO
+ END DO
+ IF( lk_mpp ) CALL mpp_sum( ztestmask, 2 ) ! sum over the global domain
+
+ IF (ztestmask(1)==1) THEN
+ IF (icorne(ib,1)==0) THEN
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) ' E R R O R : Open boundary segment ', npckge(ib)
+ IF(lwp) WRITE(numout,*) ' ========== does not start on land or on a corner'
+ IF(lwp) WRITE(numout,*)
+ nstop = nstop + 1
+ ELSE
+ ! This is a corner
+ IF(lwp) WRITE(numout,*) 'Found a South-East corner at (i,j): ', jpieob(ib)+1, jpjedt(ib)
+ CALL bdy_ctl_corn(npckge(ib), icorne(ib,1))
+ itest=itest+1
+ ENDIF
+ ENDIF
+ IF (ztestmask(2)==1) THEN
+ IF (icorne(ib,2)==0) THEN
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) ' E R R O R : Open boundary segment ', npckge(ib)
+ IF(lwp) WRITE(numout,*) ' ========== does not end on land or on a corner'
+ IF(lwp) WRITE(numout,*)
+ nstop = nstop + 1
+ ELSE
+ ! This is a corner
+ IF(lwp) WRITE(numout,*) 'Found a North-East corner at (i,j): ', jpieob(ib)+1, jpjeft(ib)
+ CALL bdy_ctl_corn(npckge(ib), icorne(ib,2))
+ itest=itest+1
+ ENDIF
+ ENDIF
+ END DO
+ !
+ ! South segments
+ DO ib = 1, nbdysegs
+ ! get mask at boundary extremities:
+ ztestmask(1:2)=0.
+ DO ji = 1, jpi
+ DO jj = 1, jpj
+ IF (((jj + njmpp - 1) == jpjsob(ib)).AND. &
+ & ((ji + nimpp - 1) == jpisdt(ib))) ztestmask(1)=tmask(ji,jj,1)
+ IF (((jj + njmpp - 1) == jpjsob(ib)).AND. &
+ & ((ji + nimpp - 1) == jpisft(ib))) ztestmask(2)=tmask(ji,jj,1)
+ END DO
+ END DO
+ IF( lk_mpp ) CALL mpp_sum( ztestmask, 2 ) ! sum over the global domain
+
+ IF ((ztestmask(1)==1).AND.(icorns(ib,1)==0)) THEN
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) ' E R R O R : Open boundary segment ', npckgs(ib)
+ IF(lwp) WRITE(numout,*) ' ========== does not start on land or on a corner'
+ IF(lwp) WRITE(numout,*)
+ nstop = nstop + 1
+ ENDIF
+ IF ((ztestmask(2)==1).AND.(icorns(ib,2)==0)) THEN
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) ' E R R O R : Open boundary segment ', npckgs(ib)
+ IF(lwp) WRITE(numout,*) ' ========== does not end on land or on a corner'
+ IF(lwp) WRITE(numout,*)
+ nstop = nstop + 1
+ ENDIF
+ END DO
+ !
+ ! North segments
+ DO ib = 1, nbdysegn
+ ! get mask at boundary extremities:
+ ztestmask(1:2)=0.
+ DO ji = 1, jpi
+ DO jj = 1, jpj
+ IF (((jj + njmpp - 1) == jpjnob(ib)+1).AND. &
+ & ((ji + nimpp - 1) == jpindt(ib))) ztestmask(1)=tmask(ji,jj,1)
+ IF (((jj + njmpp - 1) == jpjnob(ib)+1).AND. &
+ & ((ji + nimpp - 1) == jpinft(ib))) ztestmask(2)=tmask(ji,jj,1)
+ END DO
+ END DO
+ IF( lk_mpp ) CALL mpp_sum( ztestmask, 2 ) ! sum over the global domain
+
+ IF ((ztestmask(1)==1).AND.(icornn(ib,1)==0)) THEN
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) ' E R R O R : Open boundary segment ', npckgn(ib)
+ IF(lwp) WRITE(numout,*) ' ========== does not start on land'
+ IF(lwp) WRITE(numout,*)
+ nstop = nstop + 1
+ ENDIF
+ IF ((ztestmask(2)==1).AND.(icornn(ib,2)==0)) THEN
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) ' E R R O R : Open boundary segment ', npckgn(ib)
+ IF(lwp) WRITE(numout,*) ' ========== does not end on land'
+ IF(lwp) WRITE(numout,*)
+ nstop = nstop + 1
+ ENDIF
+ END DO
+ !
+ IF ((itest==0).AND.(lwp)) WRITE(numout,*) 'NO open boundary corner found'
+ !
+ ! Other tests TBD:
+ ! segments completly on land
+ ! optimized open boundary array length according to landmask
+ ! Nudging layers that overlap with interior domain
+ !
+ END SUBROUTINE bdy_ctl_seg
+
+ SUBROUTINE bdy_ctl_corn( ib1, ib2 )
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE bdy_ctl_corn ***
+ !!
+ !! ** Purpose : Check numerical schemes consistency between
+ !! segments having a common corner
+ !!
+ !! ** Method :
+ !!----------------------------------------------------------------------
+ INTEGER, INTENT(in) :: ib1, ib2
+ INTEGER :: itest
+ !!----------------------------------------------------------------------
+ itest = 0
+
+ IF( cn_dyn2d(ib1) /= cn_dyn2d(ib2) ) itest = itest + 1
+ IF( cn_dyn3d(ib1) /= cn_dyn3d(ib2) ) itest = itest + 1
+ IF( cn_tra (ib1) /= cn_tra (ib2) ) itest = itest + 1
+ !
+ IF( nn_dyn2d_dta(ib1) /= nn_dyn2d_dta(ib2) ) itest = itest + 1
+ IF( nn_dyn3d_dta(ib1) /= nn_dyn3d_dta(ib2) ) itest = itest + 1
+ IF( nn_tra_dta (ib1) /= nn_tra_dta (ib2) ) itest = itest + 1
+ !
+ IF( nn_rimwidth(ib1) /= nn_rimwidth(ib2) ) itest = itest + 1
+ !
+ IF( itest>0 ) THEN
+ IF(lwp) WRITE(numout,*) ' E R R O R : Segments ', ib1, 'and ', ib2
+ IF(lwp) WRITE(numout,*) ' ========== have different open bdy schemes'
+ IF(lwp) WRITE(numout,*)
+ nstop = nstop + 1
+ ENDIF
+ !
+ END SUBROUTINE bdy_ctl_corn
+
+ !!=================================================================================
+END MODULE bdyini
diff --git a/MY_SRC/diaharm.F90 b/MY_SRC/diaharm.F90
new file mode 100755
index 0000000..3bb42dc
--- /dev/null
+++ b/MY_SRC/diaharm.F90
@@ -0,0 +1,848 @@
+MODULE diaharm
+ !!======================================================================
+ !! *** MODULE diaharm ***
+ !! Harmonic analysis of tidal constituents
+ !!======================================================================
+ !! History : 3.1 ! 2007 (O. Le Galloudec, J. Chanut) Original code
+ !!----------------------------------------------------------------------
+#if defined key_diaharm
+ !!----------------------------------------------------------------------
+ !! 'key_diaharm'
+ !!
+ !! NB: 2017-12 : add 3D harmonic analysis of velocities
+ !! integration of Maria Luneva's development
+ !! 'key_3Ddiaharm'
+ !!----------------------------------------------------------------------
+ USE oce ! ocean dynamics and tracers variables
+ USE dom_oce ! ocean space and time domain
+ USE phycst
+ USE daymod
+ USE tide_mod
+ USE sbctide ! Tidal forcing or not
+ !
+# if defined key_3Ddiaharm
+ USE zdf_oce
+#endif
+ !
+ USE in_out_manager ! I/O units
+ USE iom ! I/0 library
+ USE ioipsl ! NetCDF IPSL library
+ USE lbclnk ! ocean lateral boundary conditions (or mpp link)
+ USE timing ! preformance summary
+ USE wrk_nemo ! working arrays
+
+ IMPLICIT NONE
+ PRIVATE
+
+ LOGICAL, PUBLIC, PARAMETER :: lk_diaharm = .TRUE.
+
+ INTEGER, PARAMETER :: jpincomax = 2.*jpmax_harmo
+ INTEGER, PARAMETER :: jpdimsparse = jpincomax*300*24
+
+ ! !!** namelist variables **
+ INTEGER :: nit000_han ! First time step used for harmonic analysis
+ INTEGER :: nitend_han ! Last time step used for harmonic analysis
+ INTEGER :: nstep_han ! Time step frequency for harmonic analysis
+ INTEGER :: nb_ana ! Number of harmonics to analyse
+
+
+ INTEGER , ALLOCATABLE, DIMENSION(:) :: name
+ REAL(wp), ALLOCATABLE, DIMENSION(:) :: ana_freq, ut , vt , ft
+# if defined key_3Ddiaharm
+ REAL(wp), ALLOCATABLE, DIMENSION(:,:,:,:,:) :: ana_temp
+ REAL(wp), ALLOCATABLE, DIMENSION(:,:,:,:) :: out_eta , out_u, out_v , out_w , out_dzi
+# else
+ REAL(wp), ALLOCATABLE, DIMENSION(:,:,:,:) :: ana_temp
+ REAL(wp), ALLOCATABLE, DIMENSION(:,:,:) :: out_eta , out_u, out_v
+# endif
+
+ INTEGER :: ninco, nsparse
+ INTEGER , DIMENSION(jpdimsparse) :: njsparse, nisparse
+ INTEGER , SAVE, DIMENSION(jpincomax) :: ipos1
+ REAL(wp), DIMENSION(jpdimsparse) :: valuesparse
+ REAL(wp), DIMENSION(jpincomax) :: ztmp4 , ztmp7
+ REAL(wp), SAVE, DIMENSION(jpincomax,jpincomax) :: ztmp3 , zpilier
+ REAL(wp), SAVE, DIMENSION(jpincomax) :: zpivot
+
+ CHARACTER (LEN=4), DIMENSION(jpmax_harmo) :: tname ! Names of tidal constituents ('M2', 'K1',...)
+
+ PUBLIC dia_harm ! routine called by step.F90
+
+ !!----------------------------------------------------------------------
+ !! NEMO/OPA 3.5 , NEMO Consortium (2013)
+ !! $Id: diaharm.F90 5585 2015-07-10 14:19:11Z jchanut $
+ !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
+ !!----------------------------------------------------------------------
+CONTAINS
+
+ SUBROUTINE dia_harm_init
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE dia_harm_init ***
+ !!
+ !! ** Purpose : Initialization of tidal harmonic analysis
+ !!
+ !! ** Method : Initialize frequency array and nodal factor for nit000_han
+ !!
+ !!--------------------------------------------------------------------
+ INTEGER :: jh, nhan, jl
+ INTEGER :: ios ! Local integer output status for namelist read
+
+ NAMELIST/nam_diaharm/ nit000_han, nitend_han, nstep_han, tname
+ !!----------------------------------------------------------------------
+
+ IF(lwp) THEN
+ WRITE(numout,*)
+ WRITE(numout,*) 'dia_harm_init: Tidal harmonic analysis initialization'
+# if defined key_3Ddiaharm
+ WRITE(numout,*) ' - 3D harmonic analysis of currents actovated (key_3Ddiaharm)'
+#endif
+ WRITE(numout,*) '~~~~~~~ '
+ ENDIF
+ !
+ IF( .NOT. ln_tide ) CALL ctl_stop( 'dia_harm_init : ln_tide must be true for harmonic analysis')
+ !
+ CALL tide_init_Wave
+ !
+ REWIND( numnam_ref ) ! Namelist nam_diaharm in reference namelist : Tidal harmonic analysis
+ READ ( numnam_ref, nam_diaharm, IOSTAT = ios, ERR = 901)
+901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nam_diaharm in reference namelist', lwp )
+
+ REWIND( numnam_cfg ) ! Namelist nam_diaharm in configuration namelist : Tidal harmonic analysis
+ READ ( numnam_cfg, nam_diaharm, IOSTAT = ios, ERR = 902 )
+902 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nam_diaharm in configuration namelist', lwp )
+ IF(lwm) WRITE ( numond, nam_diaharm )
+ !
+ IF(lwp) THEN
+ WRITE(numout,*) 'First time step used for analysis: nit000_han= ', nit000_han
+ WRITE(numout,*) 'Last time step used for analysis: nitend_han= ', nitend_han
+ WRITE(numout,*) 'Time step frequency for harmonic analysis: nstep_han= ', nstep_han
+ ENDIF
+
+ ! Basic checks on harmonic analysis time window:
+ ! ----------------------------------------------
+ IF( nit000 > nit000_han ) CALL ctl_stop( 'dia_harm_init : nit000_han must be greater than nit000', &
+ & ' restart capability not implemented' )
+ IF( nitend < nitend_han ) CALL ctl_stop( 'dia_harm_init : nitend_han must be lower than nitend', &
+ & 'restart capability not implemented' )
+
+ IF( MOD( nitend_han-nit000_han+1 , nstep_han ) /= 0 ) &
+ & CALL ctl_stop( 'dia_harm_init : analysis time span must be a multiple of nstep_han' )
+
+ nb_ana = 0
+ DO jh=1,jpmax_harmo
+ DO jl=1,jpmax_harmo
+ IF(TRIM(tname(jh)) == Wave(jl)%cname_tide) THEN
+ nb_ana=nb_ana+1
+ ENDIF
+ END DO
+ END DO
+ !
+ IF(lwp) THEN
+ WRITE(numout,*) ' Namelist nam_diaharm'
+ WRITE(numout,*) ' nb_ana = ', nb_ana
+ CALL flush(numout)
+ ENDIF
+ !
+ IF (nb_ana > jpmax_harmo) THEN
+ IF(lwp) WRITE(numout,*) ' E R R O R dia_harm_init : nb_ana must be lower than jpmax_harmo, stop'
+ IF(lwp) WRITE(numout,*) ' jpmax_harmo= ', jpmax_harmo
+ nstop = nstop + 1
+ ENDIF
+
+ ALLOCATE(name (nb_ana))
+ DO jh=1,nb_ana
+ DO jl=1,jpmax_harmo
+ IF (TRIM(tname(jh)) .eq. Wave(jl)%cname_tide) THEN
+ name(jh) = jl
+ EXIT
+ END IF
+ END DO
+ END DO
+
+ ! Initialize frequency array:
+ ! ---------------------------
+ ALLOCATE( ana_freq(nb_ana), ut(nb_ana), vt(nb_ana), ft(nb_ana) )
+
+ CALL tide_harmo( ana_freq, vt, ut, ft, name, nb_ana )
+
+ IF(lwp) WRITE(numout,*) 'Analysed frequency : ',nb_ana ,'Frequency '
+
+ DO jh = 1, nb_ana
+ IF(lwp) WRITE(numout,*) ' : ',tname(jh),' ',ana_freq(jh)
+ END DO
+
+ ! Initialize temporary arrays:
+ ! ----------------------------
+# if defined key_3Ddiaharm
+ ALLOCATE( ana_temp( jpi, jpj, 2*nb_ana, 5, jpk ) )
+ ana_temp(:,:,:,:,:) = 0._wp
+# else
+ ALLOCATE( ana_temp( jpi, jpj, 2*nb_ana, 3 ) )
+ ana_temp(:,:,:,: ) = 0._wp
+#endif
+
+ END SUBROUTINE dia_harm_init
+
+
+ SUBROUTINE dia_harm ( kt )
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE dia_harm ***
+ !!
+ !! ** Purpose : Tidal harmonic analysis main routine
+ !!
+ !! ** Action : Sums ssh/u/v over time analysis [nit000_han,nitend_han]
+ !!
+ !!--------------------------------------------------------------------
+ INTEGER, INTENT( IN ) :: kt
+ !
+ INTEGER :: ji, jj, jh, jc, nhc
+# if defined key_3Ddiaharm
+ INTEGER :: jk
+# endif
+ REAL(wp) :: ztime, ztemp
+ !!--------------------------------------------------------------------
+ IF( nn_timing == 1 ) CALL timing_start('dia_harm')
+
+ IF( kt == nit000 ) CALL dia_harm_init
+
+ IF( kt >= nit000_han .AND. kt <= nitend_han .AND. MOD(kt,nstep_han) == 0 ) THEN
+
+ ztime = (kt-nit000+1) * rdt
+
+ !IF(lwp) WRITE(numout,*) "ztime OLD", kt, ztime, sshn(25,25)
+
+ nhc = 0
+ DO jh = 1, nb_ana
+ DO jc = 1, 2
+ nhc = nhc+1
+ ztemp =( MOD(jc,2) * ft(jh) *COS(ana_freq(jh)*ztime + vt(jh) + ut(jh)) &
+ & +(1.-MOD(jc,2))* ft(jh) *SIN(ana_freq(jh)*ztime + vt(jh) + ut(jh)))
+
+! ssh, ub, vb are stored at the last level of 5d array
+ DO jj = 1,jpj
+ DO ji = 1,jpi
+ ! Elevation and currents
+# if defined key_3Ddiaharm
+ ana_temp(ji,jj,nhc,1,jpk) = ana_temp(ji,jj,nhc,1,jpk) + ztemp*sshn(ji,jj)*ssmask (ji,jj)
+ ana_temp(ji,jj,nhc,2,jpk) = ana_temp(ji,jj,nhc,2,jpk) + ztemp*un_b(ji,jj)*ssumask(ji,jj)
+ ana_temp(ji,jj,nhc,3,jpk) = ana_temp(ji,jj,nhc,3,jpk) + ztemp*vn_b(ji,jj)*ssvmask(ji,jj)
+
+ ana_temp(ji,jj,nhc,5,jpk) = ana_temp(ji,jj,nhc,5,jpk) &
+ & + ztemp*bfrva(ji,jj)*vn(ji,jj,mbkv(ji,jj))*ssvmask(ji,jj)
+ ana_temp(ji,jj,nhc,4,jpk) = ana_temp(ji,jj,nhc,4,jpk) &
+ & + ztemp*bfrua(ji,jj)*un(ji,jj,mbku(ji,jj))*ssumask(ji,jj)
+# else
+ ana_temp(ji,jj,nhc,1) = ana_temp(ji,jj,nhc,1) + ztemp*sshn(ji,jj)*ssmask (ji,jj)
+ ana_temp(ji,jj,nhc,2) = ana_temp(ji,jj,nhc,2) + ztemp*un_b(ji,jj)*ssumask(ji,jj)
+ ana_temp(ji,jj,nhc,3) = ana_temp(ji,jj,nhc,3) + ztemp*vn_b(ji,jj)*ssvmask(ji,jj)
+# endif
+ END DO
+ END DO
+ !
+# if defined key_3Ddiaharm
+! 3d velocity and density:
+ DO jk=1,jpk-1
+ DO jj = 1,jpj
+ DO ji = 1,jpi
+ ! density and velocity
+ ana_temp(ji,jj,nhc,1,jk) = ana_temp(ji,jj,nhc,1,jk) + ztemp*rhd(ji,jj,jk)
+ ana_temp(ji,jj,nhc,2,jk) = ana_temp(ji,jj,nhc,2,jk) + ztemp*(un(ji,jj,jk)-un_b(ji,jj)) &
+ & *umask(ji,jj,jk)
+ ana_temp(ji,jj,nhc,3,jk) = ana_temp(ji,jj,nhc,3,jk) + ztemp*(vn(ji,jj,jk)-vn_b(ji,jj)) &
+ & *vmask(ji,jj,jk)
+ ana_temp(ji,jj,nhc,4,jk) = ana_temp(ji,jj,nhc,4,jk) + ztemp*wn(ji,jj,jk)
+
+ ana_temp(ji,jj,nhc,5,jk) = ana_temp(ji,jj,nhc,5,jk) - 0.5*grav*ztemp*(rhd(ji,jj,jk)+rhd(ji,jj,jk+1) )/max(rn2(ji,jj,jk),1.e-8_wp)
+! IF(jk<=mbathy(ji,jj) ) ana_temp(ji,jj,nhc,5,jk) = ana_temp(ji,jj,nhc,5,jk) - &
+! & 0.5*grav*ztemp*(rhd(ji,jj,jk)+rhd(ji,jj,jk+1) )/max(rn2(ji,jj,jk),1.e-8_wp)
+ END DO
+ END DO
+ ENDDO
+# endif
+
+ END DO
+ END DO
+ !
+ END IF
+
+ IF ( kt == nitend_han ) CALL dia_harm_end
+
+ IF( nn_timing == 1 ) CALL timing_stop('dia_harm')
+
+ END SUBROUTINE dia_harm
+
+
+ SUBROUTINE dia_harm_end
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE diaharm_end ***
+ !!
+ !! ** Purpose : Compute the Real and Imaginary part of tidal constituents
+ !!
+ !! ** Action : Decompose the signal on the harmonic constituents
+ !!
+ !!--------------------------------------------------------------------
+ INTEGER :: ji, jj, jh, jc, jn, nhan, jl
+# if defined key_3Ddiaharm
+ INTEGER :: jk
+# endif
+ INTEGER :: ksp, kun, keq
+ REAL(wp) :: ztime, ztime_ini, ztime_end
+ REAL(wp) :: X1,X2
+ REAL(wp), POINTER, DIMENSION(:,:,:,:) :: ana_amp
+ !!--------------------------------------------------------------------
+ CALL wrk_alloc( jpi , jpj , jpmax_harmo , 2 , ana_amp )
+
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) 'anharmo_end: kt=nitend_han: Perform harmonic analysis'
+ IF(lwp) WRITE(numout,*) '~~~~~~~~~~~~'
+
+ ztime_ini = nit000_han*rdt ! Initial time in seconds at the beginning of analysis
+ ztime_end = nitend_han*rdt ! Final time in seconds at the end of analysis
+ nhan = (nitend_han-nit000_han+1)/nstep_han ! Number of dumps used for analysis
+
+# if defined key_3Ddiaharm
+ ALLOCATE( out_eta(jpi,jpj,jpk,2*nb_ana), &
+ & out_u (jpi,jpj,jpk,2*nb_ana), &
+ & out_v (jpi,jpj,jpk,2*nb_ana), &
+ & out_w (jpi,jpj,jpk,2*nb_ana), &
+ & out_dzi(jpi,jpj,jpk,2*nb_ana) )
+# else
+ ALLOCATE( out_eta(jpi,jpj,2*nb_ana), &
+ & out_u (jpi,jpj,2*nb_ana), &
+ & out_v (jpi,jpj,2*nb_ana) )
+# endif
+
+ IF(lwp) WRITE(numout,*) 'ANA F OLD', ft
+ IF(lwp) WRITE(numout,*) 'ANA U OLD', ut
+ IF(lwp) WRITE(numout,*) 'ANA V OLD', vt
+
+
+ ninco = 2*nb_ana
+ ksp = 0
+ keq = 0
+ DO jn = 1, nhan
+ ztime=( (nhan-jn)*ztime_ini + (jn-1)*ztime_end )/FLOAT(nhan-1)
+ keq = keq + 1
+ kun = 0
+ DO jh = 1, nb_ana
+ DO jc = 1, 2
+ kun = kun + 1
+ ksp = ksp + 1
+ nisparse(ksp) = keq
+ njsparse(ksp) = kun
+ valuesparse(ksp) = ( MOD(jc,2) * ft(jh) * COS(ana_freq(jh)*ztime + vt(jh) + ut(jh)) &
+ & + (1.-MOD(jc,2))* ft(jh) * SIN(ana_freq(jh)*ztime + vt(jh) + ut(jh)) )
+ END DO
+ END DO
+ END DO
+
+ nsparse = ksp
+
+ ! Density and Elevation:
+# if defined key_3Ddiaharm
+ DO jk=1,jpk
+# endif
+ DO jj = 1, jpj
+ DO ji = 1, jpi
+ ! Fill input array
+ kun = 0
+ DO jh = 1, nb_ana
+ DO jc = 1, 2
+ kun = kun + 1
+# if defined key_3Ddiaharm
+ ztmp4(kun)=ana_temp(ji,jj,kun,1,jk)
+# else
+ ztmp4(kun)=ana_temp(ji,jj,kun,1)
+# endif
+ END DO
+ END DO
+
+ CALL SUR_DETERMINE(jj)
+
+ ! Fill output array
+ DO jh = 1, nb_ana
+ ana_amp(ji,jj,jh,1)=ztmp7((jh-1)*2+1)
+ ana_amp(ji,jj,jh,2)=ztmp7((jh-1)*2+2)
+ END DO
+ END DO
+ END DO
+
+
+ DO jj = 1, jpj
+ DO ji = 1, jpi
+ DO jh = 1, nb_ana
+ X1 = ana_amp(ji,jj,jh,1)
+ X2 =-ana_amp(ji,jj,jh,2)
+# if defined key_3Ddiaharm
+ out_eta(ji,jj,jk,jh ) = X1 * tmask_i(ji,jj)
+ out_eta(ji,jj,jk,jh+nb_ana) = X2 * tmask_i(ji,jj)
+# else
+ out_eta(ji,jj ,jh ) = X1 * tmask_i(ji,jj)
+ out_eta(ji,jj ,jh+nb_ana) = X2 * tmask_i(ji,jj)
+# endif
+ END DO
+ END DO
+ END DO
+
+ ! u-component of velocity
+ DO jj = 1, jpj
+ DO ji = 1, jpi
+ ! Fill input array
+ kun=0
+ DO jh = 1,nb_ana
+ DO jc = 1,2
+ kun = kun + 1
+# if defined key_3Ddiaharm
+ ztmp4(kun)=ana_temp(ji,jj,kun,2,jk)
+# else
+ ztmp4(kun)=ana_temp(ji,jj,kun,2)
+# endif
+ END DO
+ END DO
+
+ CALL SUR_DETERMINE(jj+1)
+
+ ! Fill output array
+ DO jh = 1, nb_ana
+ ana_amp(ji,jj,jh,1) = ztmp7((jh-1)*2+1)
+ ana_amp(ji,jj,jh,2) = ztmp7((jh-1)*2+2)
+ END DO
+
+ END DO
+ END DO
+
+ DO jj = 1, jpj
+ DO ji = 1, jpi
+ DO jh = 1, nb_ana
+ X1= ana_amp(ji,jj,jh,1)
+ X2=-ana_amp(ji,jj,jh,2)
+# if defined key_3Ddiaharm
+ out_u(ji,jj,jk, jh) = X1 * ssumask(ji,jj)
+ out_u(ji,jj,jk,nb_ana+jh) = X2 * ssumask(ji,jj)
+# else
+ out_u(ji,jj, jh) = X1 * ssumask(ji,jj)
+ out_u(ji,jj, nb_ana+jh) = X2 * ssumask(ji,jj)
+# endif
+ ENDDO
+ ENDDO
+ ENDDO
+
+ ! v- velocity
+ DO jj = 1, jpj
+ DO ji = 1, jpi
+ ! Fill input array
+ kun=0
+ DO jh = 1,nb_ana
+ DO jc = 1,2
+ kun = kun + 1
+# if defined key_3Ddiaharm
+ ztmp4(kun)=ana_temp(ji,jj,kun,3,jk)
+# else
+ ztmp4(kun)=ana_temp(ji,jj,kun,3)
+# endif
+ END DO
+ END DO
+
+ CALL SUR_DETERMINE(jj+1)
+
+ ! Fill output array
+ DO jh = 1, nb_ana
+ ana_amp(ji,jj,jh,1)=ztmp7((jh-1)*2+1)
+ ana_amp(ji,jj,jh,2)=ztmp7((jh-1)*2+2)
+ END DO
+
+ END DO
+ END DO
+
+ DO jj = 1, jpj
+ DO ji = 1, jpi
+ DO jh = 1, nb_ana
+ X1=ana_amp(ji,jj,jh,1)
+ X2=-ana_amp(ji,jj,jh,2)
+# if defined key_3Ddiaharm
+ out_v(ji,jj,jk, jh)=X1 * ssvmask(ji,jj)
+ out_v(ji,jj,jk,nb_ana+jh)=X2 * ssvmask(ji,jj)
+# else
+ out_v(ji,jj, jh)=X1 * ssvmask(ji,jj)
+ out_v(ji,jj, nb_ana+jh)=X2 * ssvmask(ji,jj)
+# endif
+ END DO
+ END DO
+ END DO
+
+# if defined key_3Ddiaharm
+ ! w- velocity
+ DO jj = 1, jpj
+ DO ji = 1, jpi
+ ! Fill input array
+ kun=0
+ DO jh = 1,nb_ana
+ DO jc = 1,2
+ kun = kun + 1
+ ztmp4(kun)=ana_temp(ji,jj,kun,4,jk)
+ END DO
+ END DO
+
+ CALL SUR_DETERMINE(jj+1)
+
+ ! Fill output array
+ DO jh = 1, nb_ana
+ ana_amp(ji,jj,jh,1)=ztmp7((jh-1)*2+1)
+ ana_amp(ji,jj,jh,2)=ztmp7((jh-1)*2+2)
+ END DO
+
+ END DO
+ END DO
+
+ DO jj = 1, jpj
+ DO ji = 1, jpi
+ DO jh = 1, nb_ana
+ X1=ana_amp(ji,jj,jh,1)
+ X2=-ana_amp(ji,jj,jh,2)
+ out_w(ji,jj,jk, jh)=X1 * tmask_i(ji,jj)
+ out_w(ji,jj,jk,nb_ana+jh)=X2 * tmask_i(ji,jj)
+ END DO
+ END DO
+ END DO
+
+ ! dzi- isopycnal displacements
+ DO jj = 1, jpj
+ DO ji = 1, jpi
+ ! Fill input array
+ kun=0
+ DO jh = 1,nb_ana
+ DO jc = 1,2
+ kun = kun + 1
+ ztmp4(kun)=ana_temp(ji,jj,kun,5,jk)
+ END DO
+ END DO
+
+ CALL SUR_DETERMINE(jj+1)
+
+ ! Fill output array
+ DO jh = 1, nb_ana
+ ana_amp(ji,jj,jh,1)=ztmp7((jh-1)*2+1)
+ ana_amp(ji,jj,jh,2)=ztmp7((jh-1)*2+2)
+ END DO
+
+ END DO
+ END DO
+
+ DO jj = 1, jpj
+ DO ji = 1, jpi
+ DO jh = 1, nb_ana
+ X1=ana_amp(ji,jj,jh,1)
+ X2=-ana_amp(ji,jj,jh,2)
+ out_dzi(ji,jj,jk, jh)=X1 * tmask_i(ji,jj)
+ out_dzi(ji,jj,jk,nb_ana+jh)=X2 * tmask_i(ji,jj)
+ END DO
+ END DO
+ END DO
+
+ ENDDO ! jk
+# endif
+
+ CALL dia_wri_harm ! Write results in files
+ CALL wrk_dealloc( jpi , jpj , jpmax_harmo , 2 , ana_amp )
+ !
+ END SUBROUTINE dia_harm_end
+
+
+ SUBROUTINE dia_wri_harm
+ !!--------------------------------------------------------------------
+ !! *** ROUTINE dia_wri_harm ***
+ !!
+ !! ** Purpose : Write tidal harmonic analysis results in a netcdf file
+ !!--------------------------------------------------------------------
+ CHARACTER(LEN=lc) :: cltext
+ CHARACTER(LEN=lc) :: &
+ cdfile_name_T , & ! name of the file created (T-points)
+ cdfile_name_U , & ! name of the file created (U-points)
+ cdfile_name_V ! name of the file created (V-points)
+ INTEGER :: jh
+
+# if defined key_3Ddiaharm
+ CHARACTER(LEN=lc) :: cdfile_name_W ! name of the file created (W-points)
+ INTEGER :: jk
+ REAL(WP), ALLOCATABLE, DIMENSION (:,:,:) :: z3real, z3im
+ REAL(WP), ALLOCATABLE, DIMENSION (:,:) :: z2real, z2im
+# endif
+!!----------------------------------------------------------------------
+
+#if defined key_dimgout
+ cdfile_name_T = TRIM(cexper)//'_Tidal_harmonics_gridT.dimgproc'
+ cdfile_name_U = TRIM(cexper)//'_Tidal_harmonics_gridU.dimgproc'
+ cdfile_name_V = TRIM(cexper)//'_Tidal_harmonics_gridV.dimgproc'
+# if defined key_3Ddiaharm
+ cdfile_name_W = TRIM(cexper)//'_Tidal_harmonics_gridW.dimgproc'
+# endif
+#endif
+
+ IF(lwp) WRITE(numout,*) ' '
+ IF(lwp) WRITE(numout,*) 'dia_wri_harm : Write harmonic analysis results'
+#if defined key_dimgout
+ IF(lwp) WRITE(numout,*) '~~~~~~~~~~~~~ Output files: ', TRIM(cdfile_name_T)
+ IF(lwp) WRITE(numout,*) ' ', TRIM(cdfile_name_U)
+ IF(lwp) WRITE(numout,*) ' ', TRIM(cdfile_name_V)
+# if defined key_3Ddiaharm
+ IF(lwp) WRITE(numout,*) ' ', TRIM(cdfile_name_W)
+# endif
+#endif
+ IF(lwp) WRITE(numout,*) ' '
+
+# if defined key_3Ddiaharm
+ ALLOCATE( z3real(jpi,jpj,jpk),z3im(jpi,jpj,jpk),z2real(jpi,jpj),z2im(jpi,jpj))
+# endif
+
+ ! A) density and elevation
+ !/////////////
+ !
+#if defined key_dimgout
+ cltext='density amplitude and phase; elevation is level=jpk '
+ CALL dia_wri_dimg(TRIM(cdfile_name_T), TRIM(cltext), out_eta, 2*nb_ana, '2')
+#else
+# if defined key_3Ddiaharm
+ z3real(:,:,:) = 0._wp; z3im(:,:,:) = 0._wp
+# endif
+ DO jh = 1, nb_ana
+# if defined key_3Ddiaharm
+ DO jk=1,jpkm1
+ z3real(:,:,jk)=out_eta(:,:,jk,jh)
+ z3im (:,:,jk)=out_eta(:,:,jk,jh+nb_ana)
+ ENDDO
+ z2real(:,:)=out_eta(:,:,jpk,jh); z2im(:,:)=out_eta(:,:,jpk,jh+nb_ana)
+ CALL iom_put( TRIM(tname(jh))//'x_ro', z3real(:,:,:) )
+ CALL iom_put( TRIM(tname(jh))//'y_ro', z3im (:,:,:) )
+ CALL iom_put( TRIM(tname(jh))//'x' , z2real(:,: ) )
+ CALL iom_put( TRIM(tname(jh))//'y' , z2im (:,: ) )
+# else
+ WRITE(numout,*) "OUTPUT ORI: ", TRIM(tname(jh))//'x', ' & ', TRIM(tname(jh))//'y', MAXVAL(out_eta(:,:,jh))
+ CALL iom_put( TRIM(tname(jh))//'x', out_eta(:,:,jh) )
+ CALL iom_put( TRIM(tname(jh))//'y', out_eta(:,:,nb_ana+jh) )
+# endif
+ END DO
+#endif
+
+ ! B) u
+ !/////////
+ !
+#if defined key_dimgout
+ cltext='3d u amplitude and phase; ubar is the last level'
+ CALL dia_wri_dimg(TRIM(cdfile_name_U), TRIM(cltext), out_u, 2*nb_ana, '2')
+#else
+# if defined key_3Ddiaharm
+ z3real(:,:,:) = 0._wp; z3im(:,:,:) = 0._wp
+# endif
+ DO jh = 1, nb_ana
+# if defined key_3Ddiaharm
+ DO jk=1,jpkm1
+ z3real(:,:,jk)=out_u(:,:,jk,jh)
+ z3im (:,:,jk)=out_u(:,:,jk,jh+nb_ana)
+ ENDDO
+ z2real(:,:)=out_u(:,:,jpk,jh); z2im(:,:)=out_u(:,:,jpk,jh+nb_ana)
+ CALL iom_put( TRIM(tname(jh))//'x_u3d', z3real(:,:,:) )
+ CALL iom_put( TRIM(tname(jh))//'y_u3d', z3im (:,:,:) )
+ CALL iom_put( TRIM(tname(jh))//'x_u2d', z2real(:,:) )
+ CALL iom_put( TRIM(tname(jh))//'y_u2d', z2im (:,:) )
+ z2real(:,:)=out_w(:,:,jpk,jh); z2im(:,:)=out_w(:,:,jpk,jh+nb_ana)
+ CALL iom_put( TRIM(tname(jh))//'x_tabx', z2real(:,:) )
+ CALL iom_put( TRIM(tname(jh))//'y_tabx', z2im (:,:) )
+# else
+ CALL iom_put( TRIM(tname(jh))//'x_u2d', out_u(:,:,jh) )
+ CALL iom_put( TRIM(tname(jh))//'y_u2d', out_u(:,:,nb_ana+jh) )
+# endif
+ END DO
+#endif
+
+ ! C) v
+ !/////////
+ !
+#if defined key_dimgout
+ cltext='3d v amplitude and phase; vbar is the last level'
+ CALL dia_wri_dimg(TRIM(cdfile_name_V), TRIM(cltext), out_v, 2*nb_ana, '2')
+#else
+# if defined key_3Ddiaharm
+ z3real(:,:,:) = 0._wp; z3im(:,:,:) = 0._wp
+# endif
+ DO jh = 1, nb_ana
+# if defined key_3Ddiaharm
+ DO jk=1,jpkm1
+ z3real(:,:,jk)=out_v(:,:,jk,jh)
+ z3im (:,:,jk)=out_v(:,:,jk,jh+nb_ana)
+ ENDDO
+ z2real(:,:)=out_v(:,:,jpk,jh); z2im(:,:)=out_v(:,:,jpk,jh+nb_ana)
+ CALL iom_put( TRIM(tname(jh))//'x_v3d', z3real(:,:,:) )
+ CALL iom_put( TRIM(tname(jh))//'y_v3d', z3im (:,:,:) )
+ CALL iom_put( TRIM(tname(jh))//'x_v2d' , z2real(:,:) )
+ CALL iom_put( TRIM(tname(jh))//'y_v2d' , z2im (:,:) )
+ z2real(:,:)=out_dzi(:,:,jpk,jh); z2im(:,:)=out_dzi(:,:,jpk,jh+nb_ana)
+ CALL iom_put( TRIM(tname(jh))//'x_taby', z2real(:,:) )
+ CALL iom_put( TRIM(tname(jh))//'y_taby', z2im (:,:) )
+# else
+ CALL iom_put( TRIM(tname(jh))//'x_v2d', out_v(:,:,jh ) )
+ CALL iom_put( TRIM(tname(jh))//'y_v2d', out_v(:,:,jh+nb_ana) )
+# endif
+ END DO
+
+#endif
+ ! D) w
+# if defined key_3Ddiaharm
+# if defined key_dimgout
+ cltext='3d w amplitude and phase; vort_baro is the last level'
+ CALL dia_wri_dimg(TRIM(cdfile_name_W), TRIM(cltext), out_w, 2*nb_ana, '2')
+# else
+ DO jh = 1, nb_ana
+ DO jk=1,jpkm1
+ z3real(:,:,jk)=out_w(:,:,jk,jh)
+ z3im(:,:,jk)=out_w(:,:,jk,jh+nb_ana)
+ ENDDO
+ CALL iom_put( TRIM(tname(jh))//'x_w3d', z3real(:,:,:) )
+ CALL iom_put( TRIM(tname(jh))//'y_w3d', z3im(:,:,:) )
+ END DO
+# endif
+
+! E) dzi + tau_bot
+# if defined key_dimgout
+ cltext='dzi=g*ro/N2 amplitude and phase'
+ CALL dia_wri_dimg(TRIM(cdfile_name_W), TRIM(cltext), out_w, 2*nb_ana, '2')
+# else
+ DO jh = 1, nb_ana
+ DO jk=1,jpkm1
+ z3real(:,:,jk)=out_dzi(:,:,jk,jh)
+ z3im(:,:,jk)=out_dzi(:,:,jk,jh+nb_ana)
+ ENDDO
+ CALL iom_put( TRIM(tname(jh))//'x_dzi', z3real(:,:,:) )
+ CALL iom_put( TRIM(tname(jh))//'y_dzi', z3im(:,:,:) )
+ END DO
+# endif
+# endif
+
+ !
+# if defined key_3Ddiaharm
+ DEALLOCATE(z3real, z3im, z2real,z2im)
+# endif
+
+ END SUBROUTINE dia_wri_harm
+
+
+ SUBROUTINE SUR_DETERMINE(init)
+ !!---------------------------------------------------------------------------------
+ !! *** ROUTINE SUR_DETERMINE ***
+ !!
+ !!
+ !!
+ !!---------------------------------------------------------------------------------
+ INTEGER, INTENT(in) :: init
+ !
+ INTEGER :: ji_sd, jj_sd, ji1_sd, ji2_sd, jk1_sd, jk2_sd
+ REAL(wp) :: zval1, zval2, zx1
+ REAL(wp), POINTER, DIMENSION(:) :: ztmpx, zcol1, zcol2
+ INTEGER , POINTER, DIMENSION(:) :: ipos2, ipivot
+ !---------------------------------------------------------------------------------
+ CALL wrk_alloc( jpincomax , ztmpx , zcol1 , zcol2 )
+ CALL wrk_alloc( jpincomax , ipos2 , ipivot )
+
+ IF( init == 1 ) THEN
+ IF( nsparse > jpdimsparse ) CALL ctl_stop( 'STOP', 'SUR_DETERMINE : nsparse .GT. jpdimsparse')
+ IF( ninco > jpincomax ) CALL ctl_stop( 'STOP', 'SUR_DETERMINE : ninco .GT. jpincomax')
+ !
+ ztmp3(:,:) = 0._wp
+ !
+ DO jk1_sd = 1, nsparse
+ DO jk2_sd = 1, nsparse
+ nisparse(jk2_sd) = nisparse(jk2_sd)
+ njsparse(jk2_sd) = njsparse(jk2_sd)
+ IF( nisparse(jk2_sd) == nisparse(jk1_sd) ) THEN
+ ztmp3(njsparse(jk1_sd),njsparse(jk2_sd)) = ztmp3(njsparse(jk1_sd),njsparse(jk2_sd)) &
+ & + valuesparse(jk1_sd)*valuesparse(jk2_sd)
+ ENDIF
+ END DO
+ END DO
+ !
+ DO jj_sd = 1 ,ninco
+ ipos1(jj_sd) = jj_sd
+ ipos2(jj_sd) = jj_sd
+ END DO
+ !
+ DO ji_sd = 1 , ninco
+ !
+ !find greatest non-zero pivot:
+ zval1 = ABS(ztmp3(ji_sd,ji_sd))
+ !
+ ipivot(ji_sd) = ji_sd
+ DO jj_sd = ji_sd, ninco
+ zval2 = ABS(ztmp3(ji_sd,jj_sd))
+ IF( zval2.GE.zval1 )THEN
+ ipivot(ji_sd) = jj_sd
+ zval1 = zval2
+ ENDIF
+ END DO
+ !
+ DO ji1_sd = 1, ninco
+ zcol1(ji1_sd) = ztmp3(ji1_sd,ji_sd)
+ zcol2(ji1_sd) = ztmp3(ji1_sd,ipivot(ji_sd))
+ ztmp3(ji1_sd,ji_sd) = zcol2(ji1_sd)
+ ztmp3(ji1_sd,ipivot(ji_sd)) = zcol1(ji1_sd)
+ END DO
+ !
+ ipos2(ji_sd) = ipos1(ipivot(ji_sd))
+ ipos2(ipivot(ji_sd)) = ipos1(ji_sd)
+ ipos1(ji_sd) = ipos2(ji_sd)
+ ipos1(ipivot(ji_sd)) = ipos2(ipivot(ji_sd))
+ zpivot(ji_sd) = ztmp3(ji_sd,ji_sd)
+ DO jj_sd = 1, ninco
+ ztmp3(ji_sd,jj_sd) = ztmp3(ji_sd,jj_sd) / zpivot(ji_sd)
+ END DO
+ !
+ DO ji2_sd = ji_sd+1, ninco
+ zpilier(ji2_sd,ji_sd)=ztmp3(ji2_sd,ji_sd)
+ DO jj_sd=1,ninco
+ ztmp3(ji2_sd,jj_sd)= ztmp3(ji2_sd,jj_sd) - ztmp3(ji_sd,jj_sd) * zpilier(ji2_sd,ji_sd)
+ END DO
+ END DO
+ !
+ END DO
+ !
+ ENDIF ! End init==1
+
+ DO ji_sd = 1, ninco
+ ztmp4(ji_sd) = ztmp4(ji_sd) / zpivot(ji_sd)
+ DO ji2_sd = ji_sd+1, ninco
+ ztmp4(ji2_sd) = ztmp4(ji2_sd) - ztmp4(ji_sd) * zpilier(ji2_sd,ji_sd)
+ END DO
+ END DO
+
+ !system solving:
+ ztmpx(ninco) = ztmp4(ninco) / ztmp3(ninco,ninco)
+ ji_sd = ninco
+ DO ji_sd = ninco-1, 1, -1
+ zx1 = 0._wp
+ DO jj_sd = ji_sd+1, ninco
+ zx1 = zx1 + ztmpx(jj_sd) * ztmp3(ji_sd,jj_sd)
+ END DO
+ ztmpx(ji_sd) = ztmp4(ji_sd)-zx1
+ END DO
+
+ DO jj_sd =1, ninco
+ ztmp7(ipos1(jj_sd))=ztmpx(jj_sd)
+ END DO
+
+ CALL wrk_dealloc( jpincomax , ztmpx , zcol1 , zcol2 )
+ CALL wrk_dealloc( jpincomax , ipos2 , ipivot )
+ !
+ END SUBROUTINE SUR_DETERMINE
+
+#else
+ !!----------------------------------------------------------------------
+ !! Default case : Empty module
+ !!----------------------------------------------------------------------
+ LOGICAL, PUBLIC, PARAMETER :: lk_diaharm = .FALSE.
+CONTAINS
+ SUBROUTINE dia_harm ( kt ) ! Empty routine
+ INTEGER, INTENT( IN ) :: kt
+ WRITE(*,*) 'dia_harm: you should not have seen this print'
+ END SUBROUTINE dia_harm
+#endif
+
+ !!======================================================================
+END MODULE diaharm
diff --git a/MY_SRC/diaharm_fast.F90 b/MY_SRC/diaharm_fast.F90
new file mode 100755
index 0000000..66ba75e
--- /dev/null
+++ b/MY_SRC/diaharm_fast.F90
@@ -0,0 +1,857 @@
+MODULE diaharm_fast
+ !!======================================================================
+ !! *** MODULE example ***
+ !! Ocean physics: On line harmonic analyser
+ !!
+ !!=====================================================================
+
+#if defined key_diaharm_fast
+
+ !!----------------------------------------------------------------------
+ !! 'key_harm_ana' : Calculate harmonic analysis
+ !!----------------------------------------------------------------------
+ !! harm_ana :
+ !! harm_ana_init :
+ !! NB: 2017-12 : add 3D harmonic analysis of velocities
+ !! integration of Maria Luneva's development
+ !! 'key_3Ddiaharm'
+ !!----------------------------------------------------------------------
+
+ USE oce ! ocean dynamics and tracers
+ USE dom_oce ! ocean space and time domain
+ USE iom
+ USE in_out_manager ! I/O units
+ USE phycst ! physical constants
+ USE lbclnk ! ocean lateral boundary conditions (or mpp link)
+ USE bdy_oce ! ocean open boundary conditions
+ USE bdytides ! tidal bdy forcing
+ USE daymod ! calendar
+ USE tideini
+ USE restart
+ USE ioipsl, ONLY : ju2ymds ! for calendar
+ !
+ !
+ USE timing ! preformance summary
+ USE zdf_oce
+
+ IMPLICIT NONE
+ PRIVATE
+
+ !! * Routine accessibility
+ PUBLIC dia_harm_fast ! routine called in step.F90 module
+ LOGICAL, PUBLIC, PARAMETER :: lk_diaharm_fast = .TRUE. ! to be run or not
+ LOGICAL, PUBLIC :: lk_diaharm_2D ! = .TRUE. ! to run 2d
+ LOGICAL, PUBLIC :: lk_diaharm_3D ! = .TRUE. ! to run 3d
+
+ !! * Module variables
+ INTEGER, PARAMETER :: nharm_max = jpmax_harmo ! max number of harmonics to be analysed
+ INTEGER, PARAMETER :: nhm_max = 2*nharm_max+1
+ INTEGER, PARAMETER :: nvab = 2 ! number of 3D variables
+ INTEGER :: nharm
+ INTEGER :: nhm
+ INTEGER :: & !!! ** toto namelist (namtoto) **
+ nflag = 1 ! default value of nflag
+ REAL(wp), DIMENSION(nharm_max) :: &
+ om_tide ! tidal frequencies ( rads/sec)
+ REAL(wp), ALLOCATABLE,SAVE,DIMENSION(:) :: &
+ bzz,c,x ! work arrays
+ REAL(wp) :: cca,ssa,zm,bt,dd_cumul
+!
+ REAL(wp), PUBLIC :: fjulday_startharm !: Julian Day since start of harmonic analysis
+ REAL(wp), PUBLIC, ALLOCATABLE,DIMENSION(:) :: anau, anav, anaf ! nodel/phase corrections used by diaharmana
+ REAL(WP), ALLOCATABLE,SAVE,DIMENSION(:,:) :: cc,a
+!
+ INTEGER :: nvar_2d, nvar_3d !: number of 2d and 3d variables to analyse
+ INTEGER, ALLOCATABLE,DIMENSION(:) :: m_posi_2d, m_posi_3d
+
+! Name of variables used in the restart
+ CHARACTER( LEN = 10 ), DIMENSION(5), PARAMETER :: m_varName2d = (/'ssh','u2d','v2d','ubfr','vbfr'/)
+ CHARACTER( LEN = 10 ), DIMENSION(4), PARAMETER :: m_varName3d = (/'rho','u3d','v3d','w3d'/)
+!
+ REAL(wp), ALLOCATABLE,SAVE,DIMENSION(:,:,:,: ) :: g_cosamp2D, g_sinamp2D, g_cumul_var2D
+ REAL(wp), ALLOCATABLE,SAVE,DIMENSION(:,:,:,:,:) :: g_cosamp3D, g_sinamp3D, g_cumul_var3D
+!
+ REAL(wp), ALLOCATABLE,SAVE,DIMENSION(:,:) :: g_out2D,h_out2D ! arrays for output
+ REAL(wp), ALLOCATABLE,SAVE,DIMENSION(:,:,:) :: g_out3D,h_out3D ! arrays for 3D output
+!
+! NAMELIST
+ LOGICAL, PUBLIC :: ln_diaharm_store !: =T Stores data for harmonic Analysis
+ LOGICAL, PUBLIC :: ln_diaharm_compute !: =T Compute harmonic Analysis
+ LOGICAL, PUBLIC :: ln_diaharm_read_restart !: =T Read restart from a previous run
+ LOGICAL, PUBLIC :: ln_ana_ssh, ln_ana_uvbar, ln_ana_bfric, ln_ana_rho, ln_ana_uv3d, ln_ana_w3d
+ INTEGER :: nb_ana ! Number of harmonics to analyse
+ CHARACTER (LEN=4), DIMENSION(jpmax_harmo) :: tname ! Names of tidal constituents ('M2', 'K1',...)
+ INTEGER , ALLOCATABLE, DIMENSION(:) :: ntide_all ! INDEX within the full set of constituents (tide.h90)
+ INTEGER , ALLOCATABLE, DIMENSION(:) :: ntide_sub ! INDEX within the subset of constituents pass in input
+
+ !! * Substitutions
+
+ !!----------------------------------------------------------------------
+ !! OPA 9.0 , LOCEAN-IPSL (2005)
+ !! or LIM 2.0 , UCL-LOCEAN-IPSL (2005)
+ !! or TOP 1.0 , LOCEAN-IPSL (2005)
+ !! $Header: /home/opalod/NEMOCVSROOT/NEMO/OPA_SRC/module_example,v 1.3 2005/03/27 18:34:47 opalod Exp $
+ !! This software is governed by the CeCILL licence see modipsl/doc/NEMO_CeCILL.txt
+ !!----------------------------------------------------------------------
+
+CONTAINS
+
+ SUBROUTINE dia_harm_fast( kt )
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE harm_ana ***
+ !!
+ !! ** Purpose : Harmonic analyser
+ !!
+ !! ** Method :
+ !!
+ !! ** Action : - first action (share memory array/varible modified
+ !! in this routine
+ !! - second action .....
+ !! - .....
+ !!
+ !! References :
+ !! Give references if exist otherwise suppress these lines
+ !!
+ !! History :
+ !! 9.0 ! 03-08 (Autor Names) Original code
+ !! ! 02-08 (Author names) brief description of modifications
+ !!----------------------------------------------------------------------
+ !! * Modules used
+
+ !! * arguments
+ INTEGER, INTENT( in ) :: &
+ kt ! describe it!!!
+
+ !! * local declarations
+ INTEGER :: ji, jk, jj ! dummy loop arguments
+ INTEGER :: jh, i1, i2, jgrid
+ INTEGER :: j2d, j3d
+ REAL(WP) :: sec2start
+ !!--------------------------------------------------------------------
+
+ IF( nn_timing == 1 ) CALL timing_start( 'dia_harm_fast' )
+ IF( kt == nit000 ) CALL harm_ana_init ! Initialization (first time-step only)
+
+ IF ( ln_diaharm_store .and. ( lk_diaharm_2D .or. lk_diaharm_3D) ) THEN
+
+ ! this bit done every time step
+ nhm=2*nb_ana+1
+ c(1) = 1.0
+
+ sec2start = nint( (fjulday-fjulday_startharm)*86400._wp )
+ !IF(lwp) WRITE(numout,*) "ztime NEW", kt, sec2start, fjulday_startharm
+
+ DO jh=1,nb_ana
+ c(2*jh ) = anaf(jh)*cos( sec2start*om_tide(jh) + anau(jh) + anav(jh) )
+ c(2*jh+1) = anaf(jh)*sin( sec2start*om_tide(jh) + anau(jh) + anav(jh) )
+ ENDDO
+
+ !IF(lwp) WRITE(numout,*) "c init", c, "c end", sec2start, om_tide(1), anau(1), anav(1),"end nodal"
+
+
+ ! CUMULATE
+ DO ji=1,jpi ! loop lon
+ DO jj=1,jpj ! loop lat
+ DO jh=1,nhm ! loop harmonic
+
+ DO j2d=1,nvar_2d
+ IF ( m_posi_2d(j2d) .eq. 1 ) dd_cumul = c(jh) * sshn(ji,jj) * ssmask (ji,jj) ! analysis elevation
+ IF ( m_posi_2d(j2d) .eq. 2 ) dd_cumul = c(jh) * un_b(ji,jj) * ssumask(ji,jj) ! analysis depth average velocities
+ IF ( m_posi_2d(j2d) .eq. 3 ) dd_cumul = c(jh) * vn_b(ji,jj) * ssvmask(ji,jj)
+ IF ( m_posi_2d(j2d) .eq. 4 ) dd_cumul = c(jh) * bfrua(ji,jj) * un(ji,jj,mbku(ji,jj)) * ssumask(ji,jj) ! analysis bottom friction
+ IF ( m_posi_2d(j2d) .eq. 5 ) dd_cumul = c(jh) * bfrva(ji,jj) * vn(ji,jj,mbkv(ji,jj)) * ssvmask(ji,jj)
+ g_cumul_var2D(jh,ji,jj,j2d) = g_cumul_var2D(jh,ji,jj,j2d) + dd_cumul
+ ENDDO
+
+ DO j3d=1,nvar_3d
+ DO jk=1,jpkm1
+ IF ( m_posi_3d(j3d) .eq. 1 ) dd_cumul = c(jh) * rhd(ji,jj,jk) * tmask(ji,jj,jk)
+ IF ( m_posi_3d(j3d) .eq. 2 ) dd_cumul = c(jh) * ( un(ji,jj,jk)-un_b(ji,jj) ) * umask(ji,jj,jk)
+ IF ( m_posi_3d(j3d) .eq. 3 ) dd_cumul = c(jh) * ( vn(ji,jj,jk)-vn_b(ji,jj) ) * vmask(ji,jj,jk)
+ IF ( m_posi_3d(j3d) .eq. 4 ) dd_cumul = c(jh) * wn(ji,jj,jk) * wmask(ji,jj,jk)
+ g_cumul_var3D(jh,ji,jj,jk,j3d) = g_cumul_var3D(jh,ji,jj,jk,j3d) + dd_cumul
+ ENDDO
+ ENDDO
+
+ ENDDO ! end loop harmonic
+ ENDDO ! end loop lat
+ ENDDO ! end loop lon
+
+ ! Compute nodal factor cumulative cross-product
+ DO i1=1,nhm
+ DO i2=1,nhm
+ cc(i1,i2)=cc(i1,i2)+c(i1)*c(i2)
+ ENDDO
+ ENDDO
+
+ ! Output RESTART
+ IF( kt == nitrst ) THEN
+ CALL harm_rst_write(kt) ! Dump out data for a restarted run
+ ENDIF
+
+ ! At End of run
+ IF ( kt == nitend ) THEN
+
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) 'harm_ana : harmonic analysis of tides at end of run'
+ IF(lwp) WRITE(numout,*) '~~~~~~~~~'
+
+ IF( ln_diaharm_compute ) THEN
+
+ ! INITIALISE TABLE TO 0
+ IF ( nvar_2d .gt. 0 ) THEN
+ g_cosamp2D = 0.0_wp
+ g_sinamp2D = 0.0_wp
+ ENDIF
+ IF ( nvar_3d .gt. 0 ) THEN
+ g_cosamp3D = 0.0_wp
+ g_sinamp3D = 0.0_wp
+ ENDIF
+
+ ! FIRST OUTPUT 2D VARIABLES
+ DO jgrid=1,nvar_2d ! loop number of 2d variables (ssh, U2d, V2d, UVfric) to analyse harmonically
+ DO ji=1,jpi ! loop lon
+ DO jj=1,jpj ! loop lat
+ bt = 1.0_wp; bzz(:) = 0.0_wp
+ DO jh=1,nhm ! loop harmonic
+ bzz(jh) = g_cumul_var2D(jh,ji,jj,jgrid)
+ bt = bt*bzz(jh)
+ ENDDO
+ ! Copy back original cumulated nodal factor
+ a(:,:) = cc(:,:)
+! now do gaussian elimination of the system
+! a * x = b
+! the matrix x is (a0,a1,b1,a2,b2 ...)
+! the matrix a and rhs b solved here for x
+ x=0.0_wp
+ IF(bt.ne.0.) THEN
+ CALL gelim( a, bzz, x, nhm )
+! Backup output in variables
+ DO jh=1,nb_ana
+ g_cosamp2D(jh,ji,jj,jgrid) = x(jh*2 )
+ g_sinamp2D(jh,ji,jj,jgrid) = x(jh*2+1)
+ ENDDO
+ g_cosamp2D( 0,ji,jj,jgrid) = x(1)
+ g_sinamp2D( 0,ji,jj,jgrid) = 0.0_wp
+ ENDIF ! bt.ne.0.
+ ENDDO ! jj
+ ENDDO ! ji
+ ENDDO ! jgrid
+
+ ! SECOND OUTPUT 3D VARIABLES
+ DO jgrid=1,nvar_3d ! loop number of 3d variables rho, U, V, W
+ DO jk=1,jpkm1 ! loop over vertical level
+ DO ji=1,jpi ! loop over lon
+ DO jj=1,jpj ! loop over lat
+ bt = 1.0_wp; bzz(:) = 0.0_wp
+ DO jh=1,nhm
+ bzz(jh) = g_cumul_var3D(jh,ji,jj,jk,jgrid)
+ bt = bt*bzz(jh)
+ ENDDO
+ ! Copy back original cumulated nodal factor
+ a(:,:) = cc(:,:)
+! now do gaussian elimination of the system
+! a * x = b
+! the matrix x is (a0,a1,b1,a2,b2 ...)
+! the matrix a and rhs b solved here for x
+ x=0.0_wp
+ IF(bt.ne.0.) THEN
+ CALL gelim( a, bzz, x, nhm )
+! Backup output in variables
+ DO jh=1,nb_ana
+ g_cosamp3D(jh,ji,jj,jk,jgrid) = x(jh*2 )
+ g_sinamp3D(jh,ji,jj,jk,jgrid) = x(jh*2+1)
+ ENDDO
+ g_cosamp3D ( 0,ji,jj,jk,jgrid) = x(1)
+ g_sinamp3D ( 0,ji,jj,jk,jgrid) = 0.0_wp
+ ENDIF ! bt.ne.0.
+ ENDDO ! jj
+ ENDDO ! ji
+ ENDDO ! jk
+ ENDDO ! jgrid
+
+ CALL harm_ana_out ! output analysis (last time step)
+
+ ELSE ! ln_harmana_compute = False
+ IF(lwp) WRITE(numout,*) " Skipping Computing harmonics at last step"
+
+ ENDIF ! ln_harmana_compute
+ ENDIF ! kt == nitend
+
+ ENDIF
+
+ IF( nn_timing == 1 ) CALL timing_stop( 'dia_harm_fast' )
+
+ END SUBROUTINE dia_harm_fast
+
+ SUBROUTINE harm_ana_init
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE harm_ana_init ***
+ !!
+ !! ** Purpose : initialization of ....
+ !!
+ !! ** Method : blah blah blah ...
+ !!
+ !! ** input : Namlist namexa
+ !!
+ !! ** Action : ...
+ !!
+ !! history :
+ !! 9.0 ! 03-08 (Autor Names) Original code
+ !!----------------------------------------------------------------------
+ !! * local declarations
+ INTEGER :: ji, jk, jh ! dummy loop indices
+ INTEGER :: ios ! Local integer output status for namelist read
+ INTEGER :: k2d, k3d ! dummy number of analysis
+ NAMELIST/nam_diaharm_fast/ ln_diaharm_store, ln_diaharm_compute, ln_diaharm_read_restart, ln_ana_ssh, ln_ana_uvbar, ln_ana_bfric, ln_ana_rho, ln_ana_uv3d, ln_ana_w3d, tname
+ !!----------------------------------------------------------------------
+
+ lk_diaharm_2D = .TRUE. ! to run 2d
+ lk_diaharm_3D = .TRUE. ! to run 3d
+
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) 'harm_init : initialization of harmonic analysis of tides'
+ IF(lwp) WRITE(numout,*) '~~~~~~~~~'
+
+ ! GET NAMELIST DETAILS
+ REWIND( numnam_ref ) ! Namelist nam_diaharm_fast in reference namelist : Tidal harmonic analysis
+ READ ( numnam_ref, nam_diaharm_fast, IOSTAT = ios, ERR = 901)
+901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nam_diaharm_fast in reference namelist', lwp )
+
+ REWIND( numnam_cfg ) ! Namelist nam_diaharm_fast in configuration namelist : Tidal harmonic analysis
+ READ ( numnam_cfg, nam_diaharm_fast, IOSTAT = ios, ERR = 902 )
+902 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nam_diaharm_fast in configuration namelist', lwp )
+ IF(lwm) WRITE ( numond, nam_diaharm_fast )
+
+ ! GET NUMBER OF HARMONIC TO ANALYSE - from diaharm.F90
+ nb_ana = 0
+ DO jk=1,jpmax_harmo
+ DO ji=1,nb_harmo
+ IF(TRIM(tname(jk)) == Wave( ntide(ji) )%cname_tide ) THEN
+ nb_ana=nb_ana+1
+ ENDIF
+ END DO
+ END DO
+ !
+ IF(lwp) THEN
+ WRITE(numout,*) ' Namelist nam_diaharm_fast'
+ WRITE(numout,*) ' nb_ana = ', nb_ana
+ CALL flush(numout)
+ ENDIF
+ !
+ IF (nb_ana > nharm_max) THEN
+ IF(lwp) WRITE(numout,*) ' E R R O R harm_ana : nb_ana must be lower than nharm_max, stop'
+ IF(lwp) WRITE(numout,*) ' nharm_max = ', nharm_max
+ nstop = nstop + 1
+ ENDIF
+
+ ALLOCATE(ntide_all(nb_ana))
+ ALLOCATE(ntide_sub(nb_ana))
+
+ DO jk=1,nb_ana
+ DO ji=1,nb_harmo
+ IF (TRIM(tname(jk)) .eq. Wave( ntide(ji) )%cname_tide ) THEN
+ ntide_sub(jk) = ji
+ ntide_all(jk) = ntide(ji)
+ EXIT
+ END IF
+ END DO
+ END DO
+
+ ! SEARCH HOW MANY VARIABLES 2D AND 3D TO PROCESS
+ nvar_2d = 0; nvar_3d = 0
+ IF ( ln_ana_ssh ) nvar_2d = nvar_2d + 1 ! analysis elevation
+ IF ( ln_ana_uvbar ) nvar_2d = nvar_2d + 2 ! analysis depth-averaged velocity
+ IF ( ln_ana_bfric ) nvar_2d = nvar_2d + 2 ! analysis bottom friction
+
+ IF ( ln_ana_rho ) nvar_3d = nvar_3d + 1 ! analysis density
+ IF ( ln_ana_uv3d ) nvar_3d = nvar_3d + 2 ! analysis 3D horizontal velocities
+ IF ( ln_ana_w3d ) nvar_3d = nvar_3d + 1 ! analysis 3D vertical velocity
+
+ ! CHECK IF SOMETHING TO RUN
+ IF ( nvar_2d .eq. 0 ) lk_diaharm_2D = .FALSE. ! no 2d to run
+ IF ( nvar_3d .eq. 0 ) lk_diaharm_3D = .FALSE. ! no 3d to run
+! IF ( nvar_2d .gt. 0 .and. nvar_3d .gt. 0 ) lk_diaharm_fast = .FALSE.
+! IF ( .NOT. ln_diaharm_store ) lk_diaharm_fast = .FALSE.
+
+ IF ( ln_diaharm_store .and. ( lk_diaharm_2D .or. lk_diaharm_3D) ) THEN
+
+ ! DO ALLOCATIONS
+ IF ( lk_diaharm_2D ) THEN
+ ALLOCATE( g_cumul_var2D(nb_ana*2+1,jpi,jpj, nvar_2d) )
+ ALLOCATE( g_cosamp2D( 0:nb_ana*2+1,jpi,jpj, nvar_2d) )
+ ALLOCATE( g_sinamp2D( 0:nb_ana*2+1,jpi,jpj, nvar_2d) )
+ ALLOCATE( g_out2D (jpi,jpj) )
+ ALLOCATE( h_out2D (jpi,jpj) )
+ ALLOCATE( m_posi_2d( nvar_2d ) ); m_posi_2d(:)=0
+ ENDIF
+
+ IF ( lk_diaharm_3D ) THEN
+ ALLOCATE( g_cumul_var3D(nb_ana*2+1,jpi,jpj,jpk,nvar_3d) )
+ ALLOCATE( g_cosamp3D( 0:nb_ana*2+1,jpi,jpj,jpk,nvar_3d) )
+ ALLOCATE( g_sinamp3D( 0:nb_ana*2+1,jpi,jpj,jpk,nvar_3d) )
+ ALLOCATE( g_out3D (jpi,jpj,jpk) )
+ ALLOCATE( h_out3D (jpi,jpj,jpk) )
+ ALLOCATE( m_posi_3d( nvar_3d ) ); m_posi_3d(:)=0
+ ENDIF
+
+ ALLOCATE( cc(nb_ana*2+1,nb_ana*2+1) )
+ ALLOCATE( a (nb_ana*2+1,nb_ana*2+1) )
+ ALLOCATE( bzz(nb_ana*2+1) )
+ ALLOCATE( x (nb_ana*2+1) )
+ ALLOCATE( c (nb_ana*2+1) )
+ ALLOCATE( anau(nb_ana) )
+ ALLOCATE( anav(nb_ana) )
+ ALLOCATE( anaf(nb_ana) )
+ ! END ALLOCATE
+
+ ! STORE INDEX OF WHAT TO PRODUCE DEPENDING ON ACTIVATED LOGICAL
+ ! MAKES THINGS EASIER AND FASTER LATER
+ ! !!! UGLY !!!
+ jh = 1; k2d = 0;
+ IF ( ln_ana_ssh ) THEN
+ k2d = k2d + 1; m_posi_2d(k2d) = jh
+ IF(lwp) WRITE(numout,*) " - ssh harmonic analysis activated (ln_ana_ssh)"
+ ENDIF
+ jh = jh + 1
+ IF ( ln_ana_uvbar ) THEN
+ k2d = k2d + 1; m_posi_2d(k2d) = jh
+ jh = jh + 1
+ k2d = k2d + 1; m_posi_2d(k2d) = jh
+ IF(lwp) WRITE(numout,*) " - barotropic currents harmonic analysis activated (ln_ana_uvbar)"
+ ELSE
+ jh = jh + 1
+ ENDIF
+ jh = jh + 1
+ IF ( ln_ana_bfric ) THEN
+ k2d = k2d + 1; m_posi_2d(k2d) = jh
+ jh = jh + 1;
+ k2d = k2d + 1; m_posi_2d(k2d) = jh
+ IF(lwp) WRITE(numout,*) " - bottom friction harmonic analysis activated (ln_ana_vbfr)"
+ ELSE
+ jh = jh + 1
+ ENDIF
+
+ ! and for 3D
+ jh = 1; k3d = 0;
+ IF ( ln_ana_rho ) THEN
+ k3d = k3d + 1; m_posi_3d(k3d) = jh
+ IF(lwp) WRITE(numout,*) " - 3D density harmonic analysis activated (ln_ana_rho)"
+ ENDIF
+ jh = jh + 1
+ IF ( ln_ana_uv3d ) THEN
+ k3d = k3d + 1; m_posi_3d(k3d) = jh
+ jh = jh + 1
+ k3d = k3d + 1; m_posi_3d(k3d) = jh
+ IF(lwp) WRITE(numout,*) " - 3D horizontal currents harmonic analysis activated (ln_ana_uv3d)"
+ ELSE
+ jh = jh + 1
+ ENDIF
+ jh = jh + 1
+ IF ( ln_ana_w3d ) THEN
+ k3d = k3d + 1; m_posi_3d(k3d) = jh
+ IF(lwp) WRITE(numout,*) " - 3D vertical currents harmonic analysis activated (ln_ana_w3d)"
+ ENDIF
+
+ ! SELECT AND STORE FREQUENCIES
+ IF(lwp) WRITE(numout,*) 'Analysed frequency : ',nb_ana ,'Frequency '
+ DO jh=1,nb_ana
+ om_tide(jh) = omega_tide( ntide_sub(jh) )
+ IF(lwp) WRITE(numout,*) ' - ',tname(jh),' ',om_tide(jh)
+ ENDDO
+
+ ! READ RESTART IF
+ IF ( ln_diaharm_read_restart ) THEN
+ IF (lwp) WRITE(numout,*) "Reading previous harmonic data from previous run"
+ ! Need to read in bssh bz, cc anau anav and anaf
+ call harm_rst_read ! This reads in from the previous day
+ ! Currrently the data in in assci format
+ ELSE
+
+ IF (lwp) WRITE(numout,*) "Starting harmonic analysis from Fresh "
+
+ IF ( lk_diaharm_2D ) g_cumul_var2D(:,:,:,: ) = 0.0_wp
+ IF ( lk_diaharm_3D ) g_cumul_var3D(:,:,:,:,:) = 0.0_wp
+ cc = 0.0_wp
+ a (:,:) = 0.0_wp ! NB
+ bzz (:) = 0.0_wp
+ x (:) = 0.0_wp
+ c (:) = 0.0_wp
+ anau (:) = 0.0_wp
+ anav (:) = 0.0_wp
+ anaf (:) = 0.0_wp
+
+ DO jh = 1, nb_ana
+ anau(jh) = utide ( ntide_sub(jh) )
+ anav(jh) = v0tide( ntide_sub(jh) )
+ anaf(jh) = ftide ( ntide_sub(jh) )
+ END DO
+
+ fjulday_startharm=fjulday !Set this at very start and store
+
+ IF (lwp) THEN
+ WRITE(numout,*) '--------------------------'
+ WRITE(numout,*) ' - Output anaf for check'
+ WRITE(numout,*) 'ANA F', anaf
+ WRITE(numout,*) 'ANA U', anau
+ WRITE(numout,*) 'ANA V', anav
+ WRITE(numout,*) fjulday_startharm
+ WRITE(numout,*) '--------------------------'
+ ENDIF
+
+ ENDIF
+
+ ELSE
+
+ IF (lwp) WRITE(numout,*) "No variable setup for harmonic analysis"
+
+ ENDIF
+
+ END SUBROUTINE harm_ana_init
+!
+ SUBROUTINE gelim (a,b,x,n)
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE harm_ana ***
+ !!
+ !! ** Purpose : Guassian elimination
+ !!
+ !!
+ !! ** Action : - first action (share memory array/varible modified
+ !! in this routine
+ !! - second action .....
+ !! - .....
+ !!
+ !! References :
+ !! Give references if exist otherwise suppress these lines
+ !!
+ !! History :
+ implicit none
+!
+ integer :: n
+ REAL(WP) :: b(nb_ana*2+1), a(nb_ana*2+1,nb_ana*2+1)
+ REAL(WP) :: x(nb_ana*2+1)
+ INTEGER :: row,col,prow,pivrow,rrow
+ REAL(WP) :: atemp
+ REAL(WP) :: pivot
+ REAL(WP) :: m
+
+ do row=1,n-1
+ pivrow=row
+ pivot=a(row,n-row+1)
+ do prow=row+1,n
+ if (abs(a(prow,n-row+1)).gt.abs(pivot) ) then
+ pivot=a(prow,n-row+1)
+ pivrow=prow
+ endif
+ enddo
+! swap row and prow
+ if ( pivrow .ne. row ) then
+ atemp=b(pivrow)
+ b(pivrow)=b(row)
+ b(row)=atemp
+ do col=1,n
+ atemp=a(pivrow,col)
+ a(pivrow,col)=a(row,col)
+ a(row,col)=atemp
+ enddo
+ endif
+
+ do rrow=row+1,n
+ if (a(row,row).ne.0) then
+
+ m=-a(rrow,n-row+1)/a(row,n-row+1)
+ do col=1,n
+ a(rrow,col)=m*a(row,col)+a(rrow,col)
+ enddo
+ b(rrow)=m*b(row)+b(rrow)
+ endif
+ enddo
+ enddo
+! back substitution now
+
+ x(1)=b(n)/a(n,1)
+ do row=n-1,1,-1
+ x(n-row+1)=b(row)
+ do col=1,(n-row)
+ x(n-row+1)=(x(n-row+1)-a(row,col)*x(col))
+ enddo
+
+ x(n-row+1)=(x(n-row+1)/a(row,(n-row)+1))
+ enddo
+
+ return
+ END SUBROUTINE gelim
+
+ SUBROUTINE harm_ana_out
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE harm_ana_init ***
+ !!
+ !! ** Purpose : initialization of ....
+ !!
+ !! ** Method : blah blah blah ...
+ !!
+ !! ** input : Namlist namexa
+ !!
+ !! ** Action : ...
+ !!
+ !! history :
+ !! 9.0 ! 03-08 (Autor Names) Original code
+ !!----------------------------------------------------------------------
+ USE dianam ! build name of file (routine)
+
+ !! * local declarations
+ INTEGER :: ji, jj, jk, jgrid, jh ! dummy loop indices
+! INTEGER :: nh_T
+! INTEGER :: nid_harm
+! CHARACTER (len=40) :: clhstnamt, clop1, clop2 ! temporary names
+! CHARACTER (len=40) :: clhstnamu, clhstnamv ! temporary names
+ CHARACTER (len=40) :: suffix
+! REAL(wp) :: zsto1, zsto2, zout, zmax, zjulian, zdt, zmdi ! temporary scalars
+
+ do jgrid=1,nvar_2d
+ do jh=1,nb_ana
+ h_out2D = 0.0
+ g_out2D = 0.0
+ do jj=1,nlcj
+ do ji=1,nlci
+ cca=g_cosamp2D(jh,ji,jj,jgrid)
+ ssa=g_sinamp2D(jh,ji,jj,jgrid)
+ h_out2D(ji,jj)=sqrt(cca**2+ssa**2)
+ IF (cca.eq.0.0 .and. ssa.eq.0.0) THEN
+ g_out2D(ji,jj)= 0.0_wp
+ ELSE
+ g_out2D(ji,jj)=(180.0/rpi)*atan2(ssa,cca)
+ ENDIF
+ IF (h_out2D(ji,jj).ne.0) THEN
+ h_out2D(ji,jj)=h_out2D(ji,jj)/anaf(jh)
+ ENDIF
+ IF (g_out2D(ji,jj).ne.0) THEN !Correct and take modulus
+ g_out2D(ji,jj) = g_out2D(ji,jj) + MOD( (anau(jh)+anav(jh))/rad , 360.0)
+ if (g_out2D(ji,jj).gt.360.0) then
+ g_out2D(ji,jj)=g_out2D(ji,jj)-360.0
+ else if (g_out2D(ji,jj).lt.0.0) then
+ g_out2D(ji,jj)=g_out2D(ji,jj)+360.0
+ endif
+ ENDIF
+ enddo
+ enddo
+ !
+ ! NETCDF OUTPUT
+ suffix = TRIM( m_varName2d( m_posi_2d(jgrid) ) )
+ CALL iom_put( TRIM(Wave(ntide_all(jh))%cname_tide)//'amp_'//TRIM(suffix), h_out2D(:,:) )
+ CALL iom_put( TRIM(Wave(ntide_all(jh))%cname_tide)//'pha_'//TRIM(suffix), g_out2D(:,:) )
+
+ enddo
+ enddo
+!
+! DO THE SAME FOR 3D VARIABLES
+!
+ do jgrid=1,nvar_3d
+ do jh=1,nb_ana
+ h_out3D = 0.0
+ g_out3D = 0.0
+ DO jk=1,jpkm1
+ do jj=1,nlcj
+ do ji=1,nlci
+ cca=g_cosamp3D(jh,ji,jj,jk,jgrid)
+ ssa=g_sinamp3D(jh,ji,jj,jk,jgrid)
+ h_out3D(ji,jj,jk)=sqrt(cca**2+ssa**2)
+ IF (cca.eq.0.0 .and. ssa.eq.0.0) THEN
+ g_out3D(ji,jj,jk) = 0.0_wp
+ ELSE
+ g_out3D(ji,jj,jk) = (180.0/rpi)*atan2(ssa,cca)
+ ENDIF
+ IF (h_out3D(ji,jj,jk).ne.0) THEN
+ h_out3D(ji,jj,jk) = h_out3D(ji,jj,jk)/anaf(jh)
+ ENDIF
+ IF (g_out3D(ji,jj,jk).ne.0) THEN !Correct and take modulus
+ g_out3D(ji,jj,jk) = g_out3D(ji,jj,jk) + MOD( (anau(jh)+anav(jh))/rad , 360.0)
+ if (g_out3D(ji,jj,jk).gt.360.0) then
+ g_out3D(ji,jj,jk) = g_out3D(ji,jj,jk)-360.0
+ else if (g_out3D(ji,jj,jk).lt.0.0) then
+ g_out3D(ji,jj,jk) = g_out3D(ji,jj,jk)+360.0
+ endif
+ ENDIF
+ enddo ! ji
+ enddo ! jj
+ ENDDO ! jk
+ !
+ ! NETCDF OUTPUT
+ suffix = TRIM( m_varName3d( m_posi_3d(jgrid) ) )
+ IF(lwp) WRITE(numout,*) "harm_ana_out", suffix
+ CALL iom_put( TRIM(Wave(ntide_all(jh))%cname_tide)//'amp_'//TRIM(suffix), h_out3D(:,:,:) )
+ CALL iom_put( TRIM(Wave(ntide_all(jh))%cname_tide)//'pha_'//TRIM(suffix), g_out3D(:,:,:) )
+ enddo ! jh
+ enddo ! jgrid
+!
+ END SUBROUTINE harm_ana_out
+!
+ SUBROUTINE harm_rst_write(kt)
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE harm_ana_init ***
+ !!
+ !! ** Purpose : To write out cummulated Tidal Harmomnic data to file for
+ !! restarting
+ !!
+ !! ** Method : restart files will be dated by default
+ !!
+ !! ** input :
+ !!
+ !! ** Action : ...
+ !!
+ !! history :
+ !! 0.0 ! 01-16 (Enda O'Dea) Original code
+ !! ASSUMES dated file for rose , can change later to be more generic
+ !!----------------------------------------------------------------------
+ INTEGER, INTENT(in) :: kt ! ocean time-step
+ !!
+ INTEGER :: jh, j2d, j3d
+ CHARACTER(LEN=20) :: clkt ! ocean time-step define as a character
+ CHARACTER(LEN=50) :: clname ! ocean output restart file name
+ CHARACTER(LEN=150) :: clpath ! full path to ocean output restart file
+ CHARACTER(LEN=250) :: clfinal ! full name
+
+ !restart file
+ DO j2d=1,nvar_2d
+ CALL iom_rstput( kt, nitrst, numrow, 'Mean_'//TRIM(m_varName2d( m_posi_2d(j2d) )), g_cumul_var2D( 1, :, :, j2d ) )
+ DO jh=1,nb_ana
+ CALL iom_rstput( kt, nitrst, numrow, TRIM(Wave(ntide_all(jh))%cname_tide)//"_"//TRIM(m_varName2d( m_posi_2d(j2d) ))//'_cos', g_cumul_var2D( jh*2 , :, :, j2d ) )
+ CALL iom_rstput( kt, nitrst, numrow, TRIM(Wave(ntide_all(jh))%cname_tide)//"_"//TRIM(m_varName2d( m_posi_2d(j2d) ))//'_sin', g_cumul_var2D( jh*2+1, :, :, j2d ) )
+ ENDDO
+ ENDDO
+
+ DO j3d=1,nvar_3d
+ CALL iom_rstput( kt, nitrst, numrow, 'Mean_'//TRIM(m_varName2d( m_posi_3d(j3d) )), g_cumul_var3D( 1, :, :, :, j3d ) )
+ DO jh=1,nb_ana
+ CALL iom_rstput( kt, nitrst, numrow, TRIM(Wave(ntide_all(jh))%cname_tide)//"_"//TRIM(m_varName3d( m_posi_3d(j3d) ))//'_cos', g_cumul_var3D( jh*2 , :, :, :, j3d ) )
+ CALL iom_rstput( kt, nitrst, numrow, TRIM(Wave(ntide_all(jh))%cname_tide)//"_"//TRIM(m_varName3d( m_posi_3d(j3d) ))//'_sin', g_cumul_var3D( jh*2+1, :, :, :, j3d ) )
+ ENDDO
+ ENDDO
+
+ IF(lwp) THEN
+ IF( kt > 999999999 ) THEN ; WRITE(clkt, * ) kt
+ ELSE ; WRITE(clkt, '(i8.8)') kt
+ ENDIF
+ clname = TRIM(cexper)//"_"//TRIM(ADJUSTL(clkt))//"_restart_harm_ana.bin"
+ clpath = TRIM(cn_ocerst_outdir)
+ IF( clpath(LEN_TRIM(clpath):) /= '/' ) clpath = TRIM(clpath) // '/'
+ IF (lwp) WRITE(numout,*) 'Open tidal harmonics restart file for writing: ',TRIM(clpath)//clname
+
+ WRITE(clfinal,'(a)') trim(clpath)//trim(clname)
+ OPEN( 66, file=TRIM(clfinal), form='unformatted', access="stream" )
+ WRITE(66) cc
+ WRITE(66) anau
+ WRITE(66) anav
+ WRITE(66) anaf
+ WRITE(66) fjulday_startharm
+ CLOSE(66)
+ WRITE(numout,*) '----------------------------'
+ WRITE(numout,*) ' harm_rst_write: DONE '
+ WRITE(numout,*) cc
+ WRITE(numout,*) anaf
+ WRITE(numout,*) fjulday_startharm
+ WRITE(numout,*) '----------------------------'
+ ENDIF
+
+ END SUBROUTINE harm_rst_write
+
+ SUBROUTINE harm_rst_read
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE harm_ana_init ***
+ !!
+ !! ** Purpose : To read in cummulated Tidal Harmomnic data to file for
+ !! restarting
+ !!
+ !! ** Method :
+ !!
+ !! ** input :
+ !!
+ !! ** Action : ...
+ !!
+ !! history :
+ !! 0.0 ! 01-16 (Enda O'Dea) Original code
+ !! ASSUMES dated file for rose , can change later to be more generic
+ !!----------------------------------------------------------------------
+ CHARACTER(LEN=20) :: clkt ! ocean time-step define as a character
+ CHARACTER(LEN=50) :: clname ! ocean output restart file name
+ CHARACTER(LEN=150) :: clpath ! full path to ocean output restart file
+ CHARACTER(LEN=250) :: clfinal ! full name
+ INTEGER :: jh, j2d, j3d
+
+ IF( nit000 > 999999999 ) THEN ; WRITE(clkt, * ) nit000-1
+ ELSE ; WRITE(clkt, '(i8.8)') nit000-1
+ ENDIF
+ clname = TRIM(cexper)//"_"//TRIM(ADJUSTL(clkt))//"_restart_harm_ana.bin"
+ clpath = TRIM(cn_ocerst_outdir)
+ IF( clpath(LEN_TRIM(clpath):) /= '/' ) clpath = TRIM(clpath) // '/'
+
+ IF (lwp) WRITE(numout,*) 'Open tidal harmonics restart file for reading: ',TRIM(clpath)//clname
+
+ DO j2d=1,nvar_2d
+ CALL iom_get( numror,jpdom_autoglo, 'Mean_'//TRIM(m_varName2d( m_posi_2d(j2d) )), g_cumul_var2D( 1, :, :, j2d ) )
+ IF(lwp) WRITE(numout,*) "2D", j2d, m_posi_2d(j2d), m_varName2d( m_posi_2d(j2d) )
+ DO jh=1,nb_ana
+ CALL iom_get( numror,jpdom_autoglo, TRIM(Wave(ntide_all(jh))%cname_tide)//"_"//TRIM(m_varName2d( m_posi_2d(j2d) ))//'_cos', g_cumul_var2D( jh*2 , :, :, j2d ) )
+ CALL iom_get( numror,jpdom_autoglo, TRIM(Wave(ntide_all(jh))%cname_tide)//"_"//TRIM(m_varName2d( m_posi_2d(j2d) ))//'_sin', g_cumul_var2D( jh*2+1, :, :, j2d ) )
+ ENDDO
+ ENDDO
+
+ DO j3d=1,nvar_3d
+ CALL iom_get( numror,jpdom_autoglo, 'Mean_'//TRIM(m_varName2d( m_posi_3d(j3d) )), g_cumul_var3D( 1, :, :, :, j3d ) )
+ IF(lwp) WRITE(numout,*) "3D", j3d, m_posi_3d(j3d), m_varName3d( m_posi_3d(j3d) )
+
+ DO jh=1,nb_ana
+ CALL iom_get( numror,jpdom_autoglo, TRIM(Wave(ntide_all(jh))%cname_tide)//"_"//TRIM(m_varName3d( m_posi_3d(j3d) ))//'_cos', g_cumul_var3D( jh*2 , :, :, :, j3d ) )
+ CALL iom_get( numror,jpdom_autoglo, TRIM(Wave(ntide_all(jh))%cname_tide)//"_"//TRIM(m_varName3d( m_posi_3d(j3d) ))//'_sin', g_cumul_var3D( jh*2+1, :, :, :, j3d ) )
+ ENDDO
+ ENDDO
+
+ WRITE(clfinal,'(a)') trim(clpath)//trim(clname)
+ OPEN( 66, file=TRIM(clfinal), form='unformatted', access="stream" )
+ READ(66) cc
+ READ(66) anau
+ READ(66) anav
+ READ(66) anaf
+ READ(66) fjulday_startharm
+ CLOSE(66)
+
+ IF(lwp) THEN
+ WRITE(numout,*) '----------------------------'
+ WRITE(numout,*) ' Checking anaf is correct'
+ WRITE(numout,*) cc
+ WRITE(numout,*) anaf
+ WRITE(numout,*) fjulday_startharm
+ WRITE(numout,*) '----------------------------'
+ ENDIF
+
+ END SUBROUTINE harm_rst_read
+
+ !!======================================================================
+#else
+!!---------------------------------------------------------------------------------
+!! Dummy module NO harmonic Analysis
+!!---------------------------------------------------------------------------------
+ LOGICAL, PUBLIC, PARAMETER :: lk_diaharm_fast = .FALSE. ! to be run or not
+
+ CONTAINS
+ SUBROUTINE harm_rst_write(kt) ! Dummy routine
+ END SUBROUTINE harm_rst_write
+ SUBROUTINE harm_rst_read ! Dummy routine
+ END SUBROUTINE harm_rst_read
+ SUBROUTINE harm_ana_out ! Dummy routine
+ END SUBROUTINE harm_ana_out
+ SUBROUTINE harm_ana_init
+ END SUBROUTINE harm_ana_init
+ SUBROUTINE harm_ana( kt )
+!--- NB : end call not properly written
+ END SUBROUTINE harm_ana
+! END SUBROUTINE harm_ana_init
+!--- END NB
+ SUBROUTINE gelim (a,b,x,n)
+!--- NB : end call not properly written
+ END SUBROUTINE gelim
+! END SUBROUTINE gelim (a,b,x,n)
+!--- END NB
+#endif
+
+END MODULE diaharm_fast
diff --git a/MY_SRC/dommsk.F90 b/MY_SRC/dommsk.F90
new file mode 100755
index 0000000..29d4b88
--- /dev/null
+++ b/MY_SRC/dommsk.F90
@@ -0,0 +1,303 @@
+MODULE dommsk
+ !!======================================================================
+ !! *** MODULE dommsk ***
+ !! Ocean initialization : domain land/sea mask
+ !!======================================================================
+ !! History : OPA ! 1987-07 (G. Madec) Original code
+ !! 6.0 ! 1993-03 (M. Guyon) symetrical conditions (M. Guyon)
+ !! 7.0 ! 1996-01 (G. Madec) suppression of common work arrays
+ !! - ! 1996-05 (G. Madec) mask computed from tmask
+ !! 8.0 ! 1997-02 (G. Madec) mesh information put in domhgr.F
+ !! 8.1 ! 1997-07 (G. Madec) modification of kbat and fmask
+ !! - ! 1998-05 (G. Roullet) free surface
+ !! 8.2 ! 2000-03 (G. Madec) no slip accurate
+ !! - ! 2001-09 (J.-M. Molines) Open boundaries
+ !! NEMO 1.0 ! 2002-08 (G. Madec) F90: Free form and module
+ !! - ! 2005-11 (V. Garnier) Surface pressure gradient organization
+ !! 3.2 ! 2009-07 (R. Benshila) Suppression of rigid-lid option
+ !! 3.6 ! 2015-05 (P. Mathiot) ISF: add wmask,wumask and wvmask
+ !! 4.0 ! 2016-06 (G. Madec, S. Flavoni) domain configuration / user defined interface
+ !!----------------------------------------------------------------------
+
+ !!----------------------------------------------------------------------
+ !! dom_msk : compute land/ocean mask
+ !!----------------------------------------------------------------------
+ USE oce ! ocean dynamics and tracers
+ USE dom_oce ! ocean space and time domain
+ USE usrdef_fmask ! user defined fmask
+ USE bdy_oce
+ USE in_out_manager ! I/O manager
+ USE iom
+ USE lbclnk ! ocean lateral boundary conditions (or mpp link)
+ USE lib_mpp ! Massively Parallel Processing library
+ USE wrk_nemo ! Memory allocation
+ USE timing ! Timing
+
+ IMPLICIT NONE
+ PRIVATE
+
+ PUBLIC dom_msk ! routine called by inidom.F90
+
+ ! !!* Namelist namlbc : lateral boundary condition *
+ REAL(wp) :: rn_shlat ! type of lateral boundary condition on velocity
+ LOGICAL, PUBLIC :: ln_vorlat ! consistency of vorticity boundary condition
+ ! with analytical eqs.
+
+ !! * Substitutions
+# include "vectopt_loop_substitute.h90"
+ !!----------------------------------------------------------------------
+ !! NEMO/OPA 3.2 , LODYC-IPSL (2009)
+ !! $Id: dommsk.F90 7753 2017-03-03 11:46:59Z mocavero $
+ !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
+ !!----------------------------------------------------------------------
+CONTAINS
+
+ SUBROUTINE dom_msk( k_top, k_bot )
+ !!---------------------------------------------------------------------
+ !! *** ROUTINE dom_msk ***
+ !!
+ !! ** Purpose : Compute land/ocean mask arrays at tracer points, hori-
+ !! zontal velocity points (u & v), vorticity points (f) points.
+ !!
+ !! ** Method : The ocean/land mask at t-point is deduced from ko_top
+ !! and ko_bot, the indices of the fist and last ocean t-levels which
+ !! are either defined in usrdef_zgr or read in zgr_read.
+ !! The velocity masks (umask, vmask, wmask, wumask, wvmask)
+ !! are deduced from a product of the two neighboring tmask.
+ !! The vorticity mask (fmask) is deduced from tmask taking
+ !! into account the choice of lateral boundary condition (rn_shlat) :
+ !! rn_shlat = 0, free slip (no shear along the coast)
+ !! rn_shlat = 2, no slip (specified zero velocity at the coast)
+ !! 0 < rn_shlat < 2, partial slip | non-linear velocity profile
+ !! 2 < rn_shlat, strong slip | in the lateral boundary layer
+ !!
+ !! tmask_i : interior ocean mask at t-point, i.e. excluding duplicated
+ !! rows/lines due to cyclic or North Fold boundaries as well
+ !! as MPP halos.
+ !! tmask_h : halo mask at t-point, i.e. excluding duplicated rows/lines
+ !! due to cyclic or North Fold boundaries as well as MPP halos.
+ !!
+ !! ** Action : tmask, umask, vmask, wmask, wumask, wvmask : land/ocean mask
+ !! at t-, u-, v- w, wu-, and wv-points (=0. or 1.)
+ !! fmask : land/ocean mask at f-point (=0., or =1., or
+ !! =rn_shlat along lateral boundaries)
+ !! tmask_i : interior ocean mask
+ !! tmask_h : halo mask
+ !! ssmask , ssumask, ssvmask, ssfmask : 2D ocean mask
+ !!----------------------------------------------------------------------
+ INTEGER, DIMENSION(:,:), INTENT(in) :: k_top, k_bot ! first and last ocean level
+ !
+ INTEGER :: ji, jj, jk ! dummy loop indices
+ INTEGER :: iif, iil ! local integers
+ INTEGER :: ijf, ijl ! - -
+ INTEGER :: iktop, ikbot ! - -
+ INTEGER :: ios, inum
+ REAL(wp), POINTER, DIMENSION(:,:) :: zwf ! 2D workspace
+ !!
+ NAMELIST/namlbc/ rn_shlat, ln_vorlat
+ NAMELIST/nambdy/ ln_bdy ,nb_bdy, ln_coords_file, cn_coords_file, &
+ & ln_mask_file, cn_mask_file, cn_dyn2d, nn_dyn2d_dta, &
+ & cn_dyn3d, nn_dyn3d_dta, cn_tra, nn_tra_dta, &
+ & ln_tra_dmp, ln_dyn3d_dmp, rn_time_dmp, rn_time_dmp_out, &
+ & cn_ice_lim, nn_ice_lim_dta, &
+ & rn_ice_tem, rn_ice_sal, rn_ice_age, &
+ & ln_vol, nn_volctl, nn_rimwidth, nb_jpk_bdy
+ !!---------------------------------------------------------------------
+ !
+ IF( nn_timing == 1 ) CALL timing_start('dom_msk')
+ !
+ REWIND( numnam_ref ) ! Namelist namlbc in reference namelist : Lateral momentum boundary condition
+ READ ( numnam_ref, namlbc, IOSTAT = ios, ERR = 901 )
+901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namlbc in reference namelist', lwp )
+
+ REWIND( numnam_cfg ) ! Namelist namlbc in configuration namelist : Lateral momentum boundary condition
+ READ ( numnam_cfg, namlbc, IOSTAT = ios, ERR = 902 )
+902 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namlbc in configuration namelist', lwp )
+ IF(lwm) WRITE ( numond, namlbc )
+
+ IF(lwp) THEN ! control print
+ WRITE(numout,*)
+ WRITE(numout,*) 'dommsk : ocean mask '
+ WRITE(numout,*) '~~~~~~'
+ WRITE(numout,*) ' Namelist namlbc'
+ WRITE(numout,*) ' lateral momentum boundary cond. rn_shlat = ',rn_shlat
+ WRITE(numout,*) ' consistency with analytical form ln_vorlat = ',ln_vorlat
+ ENDIF
+
+ IF ( rn_shlat == 0. ) THEN ; IF(lwp) WRITE(numout,*) ' ocean lateral free-slip '
+ ELSEIF ( rn_shlat == 2. ) THEN ; IF(lwp) WRITE(numout,*) ' ocean lateral no-slip '
+ ELSEIF ( 0. < rn_shlat .AND. rn_shlat < 2. ) THEN ; IF(lwp) WRITE(numout,*) ' ocean lateral partial-slip '
+ ELSEIF ( 2. < rn_shlat ) THEN ; IF(lwp) WRITE(numout,*) ' ocean lateral strong-slip '
+ ELSE
+ WRITE(ctmp1,*) ' rn_shlat is negative = ', rn_shlat
+ CALL ctl_stop( ctmp1 )
+ ENDIF
+
+
+ ! Ocean/land mask at t-point (computed from ko_top and ko_bot)
+ ! ----------------------------
+ !
+ tmask(:,:,:) = 0._wp
+ DO jj = 1, jpj
+ DO ji = 1, jpi
+ iktop = k_top(ji,jj)
+ ikbot = k_bot(ji,jj)
+ IF( iktop /= 0 ) THEN ! water in the column
+ tmask(ji,jj,iktop:ikbot ) = 1._wp
+ ENDIF
+ END DO
+ END DO
+!SF add here lbc_lnk: bug not still understood : cause now domain configuration is read !
+!!gm I don't understand why...
+ CALL lbc_lnk( tmask , 'T', 1._wp ) ! Lateral boundary conditions
+
+ ! Mask corrections for bdy (read in mppini2)
+ REWIND( numnam_ref ) ! Namelist nambdy in reference namelist :Unstructured open boundaries
+ READ ( numnam_ref, nambdy, IOSTAT = ios, ERR = 903)
+903 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nambdy in reference namelist', lwp )
+
+ REWIND( numnam_cfg ) ! Namelist nambdy in configuration namelist :Unstructured open boundaries
+ READ ( numnam_cfg, nambdy, IOSTAT = ios, ERR = 904 )
+904 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nambdy in configuration namelist', lwp )
+ ! ------------------------
+ IF ( ln_bdy .AND. ln_mask_file ) THEN
+ CALL iom_open( cn_mask_file, inum )
+ CALL iom_get ( inum, jpdom_data, 'bdy_msk', bdytmask(:,:) )
+ CALL iom_close( inum )
+ DO jk = 1, jpkm1
+ DO jj = 1, jpj
+ DO ji = 1, jpi
+ tmask(ji,jj,jk) = tmask(ji,jj,jk) * bdytmask(ji,jj)
+ END DO
+ END DO
+ END DO
+ ENDIF
+
+ ! Ocean/land mask at u-, v-, and f-points (computed from tmask)
+ ! ----------------------------------------
+ ! NB: at this point, fmask is designed for free slip lateral boundary condition
+ DO jk = 1, jpk
+ DO jj = 1, jpjm1
+ DO ji = 1, fs_jpim1 ! vector loop
+ umask(ji,jj,jk) = tmask(ji,jj ,jk) * tmask(ji+1,jj ,jk)
+ vmask(ji,jj,jk) = tmask(ji,jj ,jk) * tmask(ji ,jj+1,jk)
+ END DO
+ DO ji = 1, jpim1 ! NO vector opt.
+ fmask(ji,jj,jk) = tmask(ji,jj ,jk) * tmask(ji+1,jj ,jk) &
+ & * tmask(ji,jj+1,jk) * tmask(ji+1,jj+1,jk)
+ END DO
+ END DO
+ END DO
+ CALL lbc_lnk( umask , 'U', 1._wp ) ! Lateral boundary conditions
+ CALL lbc_lnk( vmask , 'V', 1._wp )
+ CALL lbc_lnk( fmask , 'F', 1._wp )
+
+
+ ! Ocean/land mask at wu-, wv- and w points (computed from tmask)
+ !-----------------------------------------
+ wmask (:,:,1) = tmask(:,:,1) ! surface
+ wumask(:,:,1) = umask(:,:,1)
+ wvmask(:,:,1) = vmask(:,:,1)
+ DO jk = 2, jpk ! interior values
+ wmask (:,:,jk) = tmask(:,:,jk) * tmask(:,:,jk-1)
+ wumask(:,:,jk) = umask(:,:,jk) * umask(:,:,jk-1)
+ wvmask(:,:,jk) = vmask(:,:,jk) * vmask(:,:,jk-1)
+ END DO
+
+
+ ! Ocean/land column mask at t-, u-, and v-points (i.e. at least 1 wet cell in the vertical)
+ ! ----------------------------------------------
+ ssmask (:,:) = MAXVAL( tmask(:,:,:), DIM=3 )
+ ssumask(:,:) = MAXVAL( umask(:,:,:), DIM=3 )
+ ssvmask(:,:) = MAXVAL( vmask(:,:,:), DIM=3 )
+
+
+ ! Interior domain mask (used for global sum)
+ ! --------------------
+ !
+ iif = jpreci ; iil = nlci - jpreci + 1
+ ijf = jprecj ; ijl = nlcj - jprecj + 1
+ !
+ ! ! halo mask : 0 on the halo and 1 elsewhere
+ tmask_h(:,:) = 1._wp
+ tmask_h( 1 :iif, : ) = 0._wp ! first columns
+ tmask_h(iil:jpi, : ) = 0._wp ! last columns (including mpp extra columns)
+ tmask_h( : , 1 :ijf) = 0._wp ! first rows
+ tmask_h( : ,ijl:jpj) = 0._wp ! last rows (including mpp extra rows)
+ !
+ ! ! north fold mask
+ tpol(1:jpiglo) = 1._wp
+ fpol(1:jpiglo) = 1._wp
+ IF( jperio == 3 .OR. jperio == 4 ) THEN ! T-point pivot
+ tpol(jpiglo/2+1:jpiglo) = 0._wp
+ fpol( 1 :jpiglo) = 0._wp
+ IF( mjg(nlej) == jpjglo ) THEN ! only half of the nlcj-1 row for tmask_h
+ DO ji = iif+1, iil-1
+ tmask_h(ji,nlej-1) = tmask_h(ji,nlej-1) * tpol(mig(ji))
+ END DO
+ ENDIF
+ ENDIF
+ !
+ IF( jperio == 5 .OR. jperio == 6 ) THEN ! F-point pivot
+ tpol( 1 :jpiglo) = 0._wp
+ fpol(jpiglo/2+1:jpiglo) = 0._wp
+ ENDIF
+ !
+ ! ! interior mask : 2D ocean mask x halo mask
+ tmask_i(:,:) = ssmask(:,:) * tmask_h(:,:)
+
+
+ ! Lateral boundary conditions on velocity (modify fmask)
+ ! ---------------------------------------
+ IF( rn_shlat /= 0 ) THEN ! Not free-slip lateral boundary condition
+ !
+ CALL wrk_alloc( jpi,jpj, zwf )
+ !
+ DO jk = 1, jpk
+ zwf(:,:) = fmask(:,:,jk)
+ DO jj = 2, jpjm1
+ DO ji = fs_2, fs_jpim1 ! vector opt.
+ IF( fmask(ji,jj,jk) == 0._wp ) THEN
+ fmask(ji,jj,jk) = rn_shlat * MIN( 1._wp , MAX( zwf(ji+1,jj), zwf(ji,jj+1), &
+ & zwf(ji-1,jj), zwf(ji,jj-1) ) )
+ ENDIF
+ END DO
+ END DO
+ DO jj = 2, jpjm1
+ IF( fmask(1,jj,jk) == 0._wp ) THEN
+ fmask(1 ,jj,jk) = rn_shlat * MIN( 1._wp , MAX( zwf(2,jj), zwf(1,jj+1), zwf(1,jj-1) ) )
+ ENDIF
+ IF( fmask(jpi,jj,jk) == 0._wp ) THEN
+ fmask(jpi,jj,jk) = rn_shlat * MIN( 1._wp , MAX( zwf(jpi,jj+1), zwf(jpim1,jj), zwf(jpi,jj-1) ) )
+ ENDIF
+ END DO
+ DO ji = 2, jpim1
+ IF( fmask(ji,1,jk) == 0._wp ) THEN
+ fmask(ji, 1 ,jk) = rn_shlat * MIN( 1._wp , MAX( zwf(ji+1,1), zwf(ji,2), zwf(ji-1,1) ) )
+ ENDIF
+ IF( fmask(ji,jpj,jk) == 0._wp ) THEN
+ fmask(ji,jpj,jk) = rn_shlat * MIN( 1._wp , MAX( zwf(ji+1,jpj), zwf(ji-1,jpj), zwf(ji,jpjm1) ) )
+ ENDIF
+ END DO
+ END DO
+ !
+ CALL wrk_dealloc( jpi,jpj, zwf )
+ !
+ CALL lbc_lnk( fmask, 'F', 1._wp ) ! Lateral boundary conditions on fmask
+ !
+ ! CAUTION : The fmask may be further modified in dyn_vor_init ( dynvor.F90 ) depending on ln_vorlat
+ !
+ ENDIF
+
+ ! User defined alteration of fmask (use to reduce ocean transport in specified straits)
+ ! --------------------------------
+ !
+ CALL usr_def_fmask( cn_cfg, nn_cfg, fmask )
+ !
+ !
+ IF( nn_timing == 1 ) CALL timing_stop('dom_msk')
+ !
+ END SUBROUTINE dom_msk
+
+ !!======================================================================
+END MODULE dommsk
diff --git a/MY_SRC/dtatsd.F90 b/MY_SRC/dtatsd.F90
new file mode 100755
index 0000000..78a2f4d
--- /dev/null
+++ b/MY_SRC/dtatsd.F90
@@ -0,0 +1,298 @@
+MODULE dtatsd
+ !!======================================================================
+ !! *** MODULE dtatsd ***
+ !! Ocean data : read ocean Temperature & Salinity Data from gridded data
+ !!======================================================================
+ !! History : OPA ! 1991-03 () Original code
+ !! - ! 1992-07 (M. Imbard)
+ !! 8.0 ! 1999-10 (M.A. Foujols, M. Imbard) NetCDF FORMAT
+ !! NEMO 1.0 ! 2002-06 (G. Madec) F90: Free form and module
+ !! 3.3 ! 2010-10 (C. Bricaud, S. Masson) use of fldread
+ !! 3.4 ! 2010-11 (G. Madec, C. Ethe) Merge of dtatem and dtasal + suppression of CPP keys
+ !!----------------------------------------------------------------------
+
+ !!----------------------------------------------------------------------
+ !! dta_tsd : read and time interpolated ocean Temperature & Salinity Data
+ !!----------------------------------------------------------------------
+ USE oce ! ocean dynamics and tracers
+ USE dom_oce ! ocean space and time domain
+ USE fldread ! read input fields
+ USE in_out_manager ! I/O manager
+ USE phycst ! physical constants
+ USE lib_mpp ! MPP library
+ USE wrk_nemo ! Memory allocation
+ USE timing ! Timing
+ USE iom
+
+ IMPLICIT NONE
+ PRIVATE
+
+ PUBLIC dta_tsd_init ! called by opa.F90
+ PUBLIC dta_tsd ! called by istate.F90 and tradmp.90
+
+ LOGICAL , PUBLIC :: ln_tsd_init !: T & S data flag
+ LOGICAL , PUBLIC :: ln_tsd_interp !: vertical interpolation flag
+ LOGICAL , PUBLIC :: ln_tsd_tradmp !: internal damping toward input data flag
+
+ TYPE(FLD), ALLOCATABLE, DIMENSION(:) :: sf_tsd ! structure of input SST (file informations, fields read)
+ INTEGER :: jpk_init , inum_dta
+ INTEGER :: id ,linum ! local integers
+ INTEGER :: zdim(4)
+
+ !!----------------------------------------------------------------------
+ !! NEMO/OPA 3.3 , NEMO Consortium (2010)
+ !! $Id: dtatsd.F90 7753 2017-03-03 11:46:59Z mocavero $
+ !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
+ !!----------------------------------------------------------------------
+CONTAINS
+
+ SUBROUTINE dta_tsd_init( ld_tradmp )
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE dta_tsd_init ***
+ !!
+ !! ** Purpose : initialisation of T & S input data
+ !!
+ !! ** Method : - Read namtsd namelist
+ !! - allocates T & S data structure
+ !!----------------------------------------------------------------------
+ LOGICAL, INTENT(in), OPTIONAL :: ld_tradmp ! force the initialization when tradp is used
+ !
+ INTEGER :: ios, ierr0, ierr1, ierr2, ierr3, ierr4, ierr5 ! local integers
+ !!
+ CHARACTER(len=100) :: cn_dir ! Root directory for location of ssr files
+ TYPE(FLD_N), DIMENSION(jpts+2):: slf_i ! array of namelist informations on the fields to read
+ TYPE(FLD_N) :: sn_tem, sn_sal, sn_dep, sn_msk
+
+ !!
+ NAMELIST/namtsd/ ln_tsd_init, ln_tsd_interp, ln_tsd_tradmp, cn_dir, sn_tem, sn_sal, sn_dep, sn_msk
+ !!----------------------------------------------------------------------
+ !
+ IF( nn_timing == 1 ) CALL timing_start('dta_tsd_init')
+ !
+ ! Initialisation
+ ierr0 = 0 ; ierr1 = 0 ; ierr2 = 0 ; ierr3 = 0 ; ierr4 = 0 ; ierr5 = 0
+ !
+ REWIND( numnam_ref ) ! Namelist namtsd in reference namelist :
+ READ ( numnam_ref, namtsd, IOSTAT = ios, ERR = 901)
+901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namtsd in reference namelist', lwp )
+
+ REWIND( numnam_cfg ) ! Namelist namtsd in configuration namelist : Parameters of the run
+ READ ( numnam_cfg, namtsd, IOSTAT = ios, ERR = 902 )
+902 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namtsd in configuration namelist', lwp )
+ IF(lwm) WRITE ( numond, namtsd )
+
+ IF( PRESENT( ld_tradmp ) ) ln_tsd_tradmp = .TRUE. ! forces the initialization when tradmp is used
+
+ IF(lwp) THEN ! control print
+ WRITE(numout,*)
+ WRITE(numout,*) 'dta_tsd_init : Temperature & Salinity data '
+ WRITE(numout,*) '~~~~~~~~~~~~ '
+ WRITE(numout,*) ' Namelist namtsd'
+ WRITE(numout,*) ' Initialisation of ocean T & S with T &S input data ln_tsd_init = ', ln_tsd_init
+ WRITE(numout,*) ' iInterpolation of initial conditions in the vertical ln_tsd_interp = ', ln_tsd_interp
+ WRITE(numout,*) ' damping of ocean T & S toward T &S input data ln_tsd_tradmp = ', ln_tsd_tradmp
+ WRITE(numout,*)
+ IF( .NOT.ln_tsd_init .AND. .NOT.ln_tsd_tradmp ) THEN
+ WRITE(numout,*)
+ WRITE(numout,*) ' T & S data not used'
+ ENDIF
+ ENDIF
+ !
+ IF( ln_rstart .AND. ln_tsd_init ) THEN
+ CALL ctl_warn( 'dta_tsd_init: ocean restart and T & S data intialisation, ', &
+ & 'we keep the restart T & S values and set ln_tsd_init to FALSE' )
+ ln_tsd_init = .FALSE.
+ ENDIF
+ IF( ln_tsd_interp .AND. ln_tsd_tradmp ) THEN
+ CALL ctl_stop( 'dta_tsd_init: Tracer damping and vertical interpolation not yet configured' ) ; RETURN
+ ENDIF
+ IF( ln_tsd_interp .AND. LEN(TRIM(sn_msk%wname)) > 0 ) THEN
+ CALL ctl_stop( 'dta_tsd_init: Using vertical interpolation and weights files not recommended' ) ; RETURN
+ ENDIF
+ !
+ ! ! allocate the arrays (if necessary)
+ IF( ln_tsd_init .OR. ln_tsd_tradmp ) THEN
+ !
+ IF( ln_tsd_interp ) THEN
+ ALLOCATE( sf_tsd(jpts+2), STAT=ierr0 ) ! to carry the addtional depth information
+ ELSE
+ ALLOCATE( sf_tsd(jpts ), STAT=ierr0 )
+ ENDIF
+ IF( ierr0 > 0 ) THEN
+ CALL ctl_stop( 'dta_tsd_init: unable to allocate sf_tsd structure' ) ; RETURN
+ ENDIF
+ !
+ IF( ln_tsd_interp ) THEN
+ CALL iom_open ( trim(cn_dir) // trim(sn_dep%clname), inum_dta )
+ id = iom_varid( inum_dta, sn_dep%clvar, zdim )
+ jpk_init = zdim(3)
+ IF(lwp) WRITE(numout,*) 'Dimension of veritcal coordinate in ICs: ', jpk_init
+ CALL iom_close( inum_dta ) ! Close the input file
+ !
+ ALLOCATE( sf_tsd(jp_tem)%fnow(jpi,jpj,jpk_init ) , STAT=ierr0 )
+ IF( sn_tem%ln_tint ) ALLOCATE( sf_tsd(jp_tem)%fdta(jpi,jpj,jpk_init,2) , STAT=ierr1 )
+ ALLOCATE( sf_tsd(jp_sal)%fnow(jpi,jpj,jpk_init ) , STAT=ierr2 )
+ IF( sn_sal%ln_tint ) ALLOCATE( sf_tsd(jp_sal)%fdta(jpi,jpj,jpk_init,2) , STAT=ierr3 )
+ ALLOCATE( sf_tsd(jp_dep)%fnow(jpi,jpj,jpk_init ) , STAT=ierr4 )
+ ALLOCATE( sf_tsd(jp_msk)%fnow(jpi,jpj,jpk_init ) , STAT=ierr5 )
+ ELSE
+ ALLOCATE( sf_tsd(jp_tem)%fnow(jpi,jpj,jpk) , STAT=ierr0 )
+ IF( sn_tem%ln_tint ) ALLOCATE( sf_tsd(jp_tem)%fdta(jpi,jpj,jpk,2) , STAT=ierr1 )
+ ALLOCATE( sf_tsd(jp_sal)%fnow(jpi,jpj,jpk) , STAT=ierr2 )
+ IF( sn_sal%ln_tint ) ALLOCATE( sf_tsd(jp_sal)%fdta(jpi,jpj,jpk,2) , STAT=ierr3 )
+ ENDIF ! ln_tsd_interp
+
+ !
+ IF( ierr0 + ierr1 + ierr2 + ierr3 + ierr4 + ierr5 > 0 ) THEN
+ CALL ctl_stop( 'dta_tsd : unable to allocate T & S data arrays' ) ; RETURN
+ ENDIF
+ ! ! fill sf_tsd with sn_tem & sn_sal and control print
+ slf_i(jp_tem) = sn_tem ; slf_i(jp_sal) = sn_sal
+ IF( ln_tsd_interp ) slf_i(jp_dep) = sn_dep ; slf_i(jp_msk) = sn_msk
+ CALL fld_fill( sf_tsd, slf_i, cn_dir, 'dta_tsd', 'Temperature & Salinity data', 'namtsd', no_print )
+ !
+ ENDIF
+ !
+ IF( nn_timing == 1 ) CALL timing_stop('dta_tsd_init')
+ !
+ END SUBROUTINE dta_tsd_init
+
+
+ SUBROUTINE dta_tsd( kt, ptsd )
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE dta_tsd ***
+ !!
+ !! ** Purpose : provides T and S data at kt
+ !!
+ !! ** Method : - call fldread routine
+ !! - ORCA_R2: add some hand made alteration to read data
+ !! - 'key_orca_lev10' interpolates on 10 times more levels
+ !! - s- or mixed z-s coordinate: vertical interpolation on model mesh
+ !! - ln_tsd_tradmp=F: deallocates the T-S data structure
+ !! as T-S data are no are used
+ !!
+ !! ** Action : ptsd T-S data on medl mesh and interpolated at time-step kt
+ !!----------------------------------------------------------------------
+ INTEGER , INTENT(in ) :: kt ! ocean time-step
+ REAL(wp), DIMENSION(jpi,jpj,jpk,jpts), INTENT( out) :: ptsd ! T & S data
+ !
+ INTEGER :: ji, jj, jk, jl, jk_init ! dummy loop indicies
+ INTEGER :: ik, il0, il1, ii0, ii1, ij0, ij1 ! local integers
+ REAL(wp):: zl, zi
+ !!----------------------------------------------------------------------
+ !
+ IF( nn_timing == 1 ) CALL timing_start('dta_tsd')
+ !
+ CALL fld_read( kt, 1, sf_tsd ) !== read T & S data at kt time step ==!
+ !
+ !
+!!gm This should be removed from the code ===>>>> T & S files has to be changed
+ !
+ ! !== ORCA_R2 configuration and T & S damping ==!
+ IF( cn_cfg == "orca" .AND. nn_cfg == 2 .AND. ln_tsd_tradmp ) THEN ! some hand made alterations
+ !
+ ij0 = 101 ; ij1 = 109 ! Reduced T & S in the Alboran Sea
+ ii0 = 141 ; ii1 = 155
+ DO jj = mj0(ij0), mj1(ij1)
+ DO ji = mi0(ii0), mi1(ii1)
+ sf_tsd(jp_tem)%fnow(ji,jj,13:13) = sf_tsd(jp_tem)%fnow(ji,jj,13:13) - 0.20_wp
+ sf_tsd(jp_tem)%fnow(ji,jj,14:15) = sf_tsd(jp_tem)%fnow(ji,jj,14:15) - 0.35_wp
+ sf_tsd(jp_tem)%fnow(ji,jj,16:25) = sf_tsd(jp_tem)%fnow(ji,jj,16:25) - 0.40_wp
+ !
+ sf_tsd(jp_sal)%fnow(ji,jj,13:13) = sf_tsd(jp_sal)%fnow(ji,jj,13:13) - 0.15_wp
+ sf_tsd(jp_sal)%fnow(ji,jj,14:15) = sf_tsd(jp_sal)%fnow(ji,jj,14:15) - 0.25_wp
+ sf_tsd(jp_sal)%fnow(ji,jj,16:17) = sf_tsd(jp_sal)%fnow(ji,jj,16:17) - 0.30_wp
+ sf_tsd(jp_sal)%fnow(ji,jj,18:25) = sf_tsd(jp_sal)%fnow(ji,jj,18:25) - 0.35_wp
+ END DO
+ END DO
+ ij0 = 87 ; ij1 = 96 ! Reduced temperature in Red Sea
+ ii0 = 148 ; ii1 = 160
+ sf_tsd(jp_tem)%fnow( mi0(ii0):mi1(ii1) , mj0(ij0):mj1(ij1) , 4:10 ) = 7.0_wp
+ sf_tsd(jp_tem)%fnow( mi0(ii0):mi1(ii1) , mj0(ij0):mj1(ij1) , 11:13 ) = 6.5_wp
+ sf_tsd(jp_tem)%fnow( mi0(ii0):mi1(ii1) , mj0(ij0):mj1(ij1) , 14:20 ) = 6.0_wp
+ ENDIF
+!!gm end
+ !
+ IF( kt == nit000 .AND. lwp )THEN
+ WRITE(numout,*)
+ WRITE(numout,*) 'dta_tsd: interpolates T & S data onto current mesh'
+ ENDIF
+ !
+ IF( ln_tsd_interp ) THEN ! probably should use pointers in the following to make more readable
+ !
+ DO jk = 1, jpk ! determines the intepolated T-S profiles at each (i,j) points
+ DO jj= 1, jpj
+ DO ji= 1, jpi
+ zl = gdept_0(ji,jj,jk)
+ IF( zl < sf_tsd(jp_dep)%fnow(ji,jj,1) ) THEN ! above the first level of data
+ ptsd(ji,jj,jk,jp_tem) = sf_tsd(jp_tem)%fnow(ji,jj,1)
+ ptsd(ji,jj,jk,jp_sal) = sf_tsd(jp_sal)%fnow(ji,jj,1)
+ ELSEIF( zl > sf_tsd(jp_dep)%fnow(ji,jj,jpk_init) ) THEN ! below the last level of data
+ ptsd(ji,jj,jk,jp_tem) = sf_tsd(jp_tem)%fnow(ji,jj,jpk_init)
+ ptsd(ji,jj,jk,jp_sal) = sf_tsd(jp_sal)%fnow(ji,jj,jpk_init)
+ ELSE ! inbetween : vertical interpolation between jk_init & jk_init+1
+ DO jk_init = 1, jpk_init-1 ! when gdept(jk_init) < zl < gdept(jk_init+1)
+ IF( sf_tsd(jp_msk)%fnow(ji,jj,jk_init+1) == 0 ) THEN ! if there is no data fill down
+ sf_tsd(jp_tem)%fnow(ji,jj,jk_init+1) = sf_tsd(jp_tem)%fnow(ji,jj,jk_init)
+ sf_tsd(jp_sal)%fnow(ji,jj,jk_init+1) = sf_tsd(jp_sal)%fnow(ji,jj,jk_init)
+ ENDIF
+ IF( (zl-sf_tsd(jp_dep)%fnow(ji,jj,jk_init)) * (zl-sf_tsd(jp_dep)%fnow(ji,jj,jk_init+1)) <= 0._wp ) THEN
+ zi = ( zl - sf_tsd(jp_dep)%fnow(ji,jj,jk_init) ) / &
+ & (sf_tsd(jp_dep)%fnow(ji,jj,jk_init+1)-sf_tsd(jp_dep)%fnow(ji,jj,jk_init))
+ ptsd(ji,jj,jk,jp_tem) = sf_tsd(jp_tem)%fnow(ji,jj,jk_init) + &
+ & (sf_tsd(jp_tem)%fnow(ji,jj,jk_init+1)-sf_tsd(jp_tem)%fnow(ji,jj,jk_init)) * zi
+ ptsd(ji,jj,jk,jp_sal) = sf_tsd(jp_sal)%fnow(ji,jj,jk_init) + &
+ & (sf_tsd(jp_sal)%fnow(ji,jj,jk_init+1)-sf_tsd(jp_sal)%fnow(ji,jj,jk_init)) * zi
+ ENDIF
+ END DO
+ ENDIF
+ ENDDO
+ ENDDO
+ END DO
+ !
+ ptsd(:,:,:,jp_tem) = ptsd(:,:,:,jp_tem) *tmask(:,:,:)
+ ptsd(:,:,:,jp_sal) = ptsd(:,:,:,jp_sal) *tmask(:,:,:)
+ ELSE !== z- or zps- coordinate ==!
+ !
+ ptsd(:,:,:,jp_tem) = sf_tsd(jp_tem)%fnow(:,:,:) * tmask(:,:,:) ! Mask
+ ptsd(:,:,:,jp_sal) = sf_tsd(jp_sal)%fnow(:,:,:) * tmask(:,:,:)
+ !
+ IF( ln_zps ) THEN ! zps-coordinate (partial steps) interpolation at the last ocean level
+ DO jj = 1, jpj
+ DO ji = 1, jpi
+ ik = mbkt(ji,jj)
+ IF( ik > 1 ) THEN
+ zl = ( gdept_1d(ik) - gdept_0(ji,jj,ik) ) / ( gdept_1d(ik) - gdept_1d(ik-1) )
+ ptsd(ji,jj,ik,jp_tem) = (1.-zl) * ptsd(ji,jj,ik,jp_tem) + zl * ptsd(ji,jj,ik-1,jp_tem)
+ ptsd(ji,jj,ik,jp_sal) = (1.-zl) * ptsd(ji,jj,ik,jp_sal) + zl * ptsd(ji,jj,ik-1,jp_sal)
+ ENDIF
+ ik = mikt(ji,jj)
+ IF( ik > 1 ) THEN
+ zl = ( gdept_0(ji,jj,ik) - gdept_1d(ik) ) / ( gdept_1d(ik+1) - gdept_1d(ik) )
+ ptsd(ji,jj,ik,jp_tem) = (1.-zl) * ptsd(ji,jj,ik,jp_tem) + zl * ptsd(ji,jj,ik+1,jp_tem)
+ ptsd(ji,jj,ik,jp_sal) = (1.-zl) * ptsd(ji,jj,ik,jp_sal) + zl * ptsd(ji,jj,ik+1,jp_sal)
+ END IF
+ END DO
+ END DO
+ ENDIF
+ !
+ ENDIF
+ !
+ IF( .NOT.ln_tsd_tradmp ) THEN !== deallocate T & S structure ==!
+ ! (data used only for initialisation)
+ IF(lwp) WRITE(numout,*) 'dta_tsd: deallocte T & S arrays as they are only use to initialize the run'
+ DEALLOCATE( sf_tsd(jp_tem)%fnow ) ! T arrays in the structure
+ IF( sf_tsd(jp_tem)%ln_tint ) DEALLOCATE( sf_tsd(jp_tem)%fdta )
+ DEALLOCATE( sf_tsd(jp_sal)%fnow ) ! S arrays in the structure
+ IF( sf_tsd(jp_sal)%ln_tint ) DEALLOCATE( sf_tsd(jp_sal)%fdta )
+ IF( ln_tsd_interp ) DEALLOCATE( sf_tsd(jp_dep)%fnow ) ! T arrays in the structure
+ IF( ln_tsd_interp ) DEALLOCATE( sf_tsd(jp_msk)%fnow ) ! T arrays in the structure
+ DEALLOCATE( sf_tsd ) ! the structure itself
+ ENDIF
+ !
+ IF( nn_timing == 1 ) CALL timing_stop('dta_tsd')
+ !
+ END SUBROUTINE dta_tsd
+
+ !!======================================================================
+END MODULE dtatsd
diff --git a/MY_SRC/dynnxt.F90 b/MY_SRC/dynnxt.F90
new file mode 100644
index 0000000..756dfb5
--- /dev/null
+++ b/MY_SRC/dynnxt.F90
@@ -0,0 +1,428 @@
+MODULE dynnxt
+ !!=========================================================================
+ !! *** MODULE dynnxt ***
+ !! Ocean dynamics: time stepping
+ !!=========================================================================
+ !! History : OPA ! 1987-02 (P. Andrich, D. L Hostis) Original code
+ !! ! 1990-10 (C. Levy, G. Madec)
+ !! 7.0 ! 1993-03 (M. Guyon) symetrical conditions
+ !! 8.0 ! 1997-02 (G. Madec & M. Imbard) opa, release 8.0
+ !! 8.2 ! 1997-04 (A. Weaver) Euler forward step
+ !! - ! 1997-06 (G. Madec) lateral boudary cond., lbc routine
+ !! NEMO 1.0 ! 2002-08 (G. Madec) F90: Free form and module
+ !! - ! 2002-10 (C. Talandier, A-M. Treguier) Open boundary cond.
+ !! 2.0 ! 2005-11 (V. Garnier) Surface pressure gradient organization
+ !! 2.3 ! 2007-07 (D. Storkey) Calls to BDY routines.
+ !! 3.2 ! 2009-06 (G. Madec, R.Benshila) re-introduce the vvl option
+ !! 3.3 ! 2010-09 (D. Storkey, E.O'Dea) Bug fix for BDY module
+ !! 3.3 ! 2011-03 (P. Oddo) Bug fix for time-splitting+(BDY-OBC) and not VVL
+ !! 3.5 ! 2013-07 (J. Chanut) Compliant with time splitting changes
+ !! 3.6 ! 2014-04 (G. Madec) add the diagnostic of the time filter trends
+ !! 3.7 ! 2015-11 (J. Chanut) Free surface simplification
+ !!-------------------------------------------------------------------------
+
+ !!-------------------------------------------------------------------------
+ !! dyn_nxt : obtain the next (after) horizontal velocity
+ !!-------------------------------------------------------------------------
+ USE oce ! ocean dynamics and tracers
+ USE dom_oce ! ocean space and time domain
+ USE sbc_oce ! Surface boundary condition: ocean fields
+ USE phycst ! physical constants
+ USE dynadv ! dynamics: vector invariant versus flux form
+ USE dynspg_ts ! surface pressure gradient: split-explicit scheme
+ USE dynspg
+ USE domvvl ! variable volume
+ USE bdy_oce , ONLY: ln_bdy
+ USE bdydta ! ocean open boundary conditions
+ USE bdydyn ! ocean open boundary conditions
+ USE bdyvol ! ocean open boundary condition (bdy_vol routines)
+ USE trd_oce ! trends: ocean variables
+ USE trddyn ! trend manager: dynamics
+ USE trdken ! trend manager: kinetic energy
+ !
+ USE in_out_manager ! I/O manager
+ USE iom ! I/O manager library
+ USE lbclnk ! lateral boundary condition (or mpp link)
+ USE lib_mpp ! MPP library
+ USE wrk_nemo ! Memory Allocation
+ USE prtctl ! Print control
+ USE timing ! Timing
+#if defined key_agrif
+ USE agrif_opa_interp
+#endif
+
+ IMPLICIT NONE
+ PRIVATE
+
+ PUBLIC dyn_nxt ! routine called by step.F90
+
+ !!----------------------------------------------------------------------
+ !! NEMO/OPA 3.3 , NEMO Consortium (2010)
+ !! $Id: dynnxt.F90 7753 2017-03-03 11:46:59Z mocavero $
+ !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
+ !!----------------------------------------------------------------------
+CONTAINS
+
+ SUBROUTINE dyn_nxt ( kt )
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE dyn_nxt ***
+ !!
+ !! ** Purpose : Finalize after horizontal velocity. Apply the boundary
+ !! condition on the after velocity, achieve the time stepping
+ !! by applying the Asselin filter on now fields and swapping
+ !! the fields.
+ !!
+ !! ** Method : * Ensure after velocities transport matches time splitting
+ !! estimate (ln_dynspg_ts=T)
+ !!
+ !! * Apply lateral boundary conditions on after velocity
+ !! at the local domain boundaries through lbc_lnk call,
+ !! at the one-way open boundaries (ln_bdy=T),
+ !! at the AGRIF zoom boundaries (lk_agrif=T)
+ !!
+ !! * Apply the time filter applied and swap of the dynamics
+ !! arrays to start the next time step:
+ !! (ub,vb) = (un,vn) + atfp [ (ub,vb) + (ua,va) - 2 (un,vn) ]
+ !! (un,vn) = (ua,va).
+ !! Note that with flux form advection and non linear free surface,
+ !! the time filter is applied on thickness weighted velocity.
+ !! As a result, dyn_nxt MUST be called after tra_nxt.
+ !!
+ !! ** Action : ub,vb filtered before horizontal velocity of next time-step
+ !! un,vn now horizontal velocity of next time-step
+ !!----------------------------------------------------------------------
+ INTEGER, INTENT( in ) :: kt ! ocean time-step index
+ !
+ INTEGER :: ji, jj, jk ! dummy loop indices
+ INTEGER :: ikt ! local integers
+ REAL(wp) :: zue3a, zue3n, zue3b, zuf, zcoef ! local scalars
+ REAL(wp) :: zve3a, zve3n, zve3b, zvf, z1_2dt ! - -
+ REAL(wp), POINTER, DIMENSION(:,:) :: zue, zve
+ REAL(wp), POINTER, DIMENSION(:,:,:) :: ze3u_f, ze3v_f, zua, zva
+ !!----------------------------------------------------------------------
+ !
+ IF( nn_timing == 1 ) CALL timing_start('dyn_nxt')
+ !
+ IF( ln_dynspg_ts ) CALL wrk_alloc( jpi,jpj, zue, zve)
+ IF( l_trddyn ) CALL wrk_alloc( jpi,jpj,jpk, zua, zva)
+ !
+ IF( kt == nit000 ) THEN
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) 'dyn_nxt : time stepping'
+ IF(lwp) WRITE(numout,*) '~~~~~~~'
+ ENDIF
+
+ IF ( ln_dynspg_ts ) THEN
+ ! Ensure below that barotropic velocities match time splitting estimate
+ ! Compute actual transport and replace it with ts estimate at "after" time step
+ zue(:,:) = e3u_a(:,:,1) * ua(:,:,1) * umask(:,:,1)
+ zve(:,:) = e3v_a(:,:,1) * va(:,:,1) * vmask(:,:,1)
+ DO jk = 2, jpkm1
+ zue(:,:) = zue(:,:) + e3u_a(:,:,jk) * ua(:,:,jk) * umask(:,:,jk)
+ zve(:,:) = zve(:,:) + e3v_a(:,:,jk) * va(:,:,jk) * vmask(:,:,jk)
+ END DO
+ DO jk = 1, jpkm1
+ ua(:,:,jk) = ( ua(:,:,jk) - zue(:,:) * r1_hu_a(:,:) + ua_b(:,:) ) * umask(:,:,jk)
+ va(:,:,jk) = ( va(:,:,jk) - zve(:,:) * r1_hv_a(:,:) + va_b(:,:) ) * vmask(:,:,jk)
+ END DO
+ !
+ IF( .NOT.ln_bt_fw ) THEN
+ ! Remove advective velocity from "now velocities"
+ ! prior to asselin filtering
+ ! In the forward case, this is done below after asselin filtering
+ ! so that asselin contribution is removed at the same time
+ DO jk = 1, jpkm1
+ un(:,:,jk) = ( un(:,:,jk) - un_adv(:,:) + un_b(:,:) )*umask(:,:,jk)
+ vn(:,:,jk) = ( vn(:,:,jk) - vn_adv(:,:) + vn_b(:,:) )*vmask(:,:,jk)
+ END DO
+ ENDIF
+ ENDIF
+
+ ! Update after velocity on domain lateral boundaries
+ ! --------------------------------------------------
+# if defined key_agrif
+ CALL Agrif_dyn( kt ) !* AGRIF zoom boundaries
+# endif
+ !
+ CALL lbc_lnk( ua, 'U', -1. ) !* local domain boundaries
+ CALL lbc_lnk( va, 'V', -1. )
+ !
+ ! !* BDY open boundaries
+ IF( ln_bdy .AND. ln_dynspg_exp ) CALL bdy_dyn( kt )
+ IF( ln_bdy .AND. ln_dynspg_ts ) CALL bdy_dyn( kt, dyn3d_only=.true. )
+
+!!$ Do we need a call to bdy_vol here??
+ !
+ IF( l_trddyn ) THEN ! prepare the atf trend computation + some diagnostics
+ z1_2dt = 1._wp / (2. * rdt) ! Euler or leap-frog time step
+ IF( neuler == 0 .AND. kt == nit000 ) z1_2dt = 1._wp / rdt
+ !
+ ! ! Kinetic energy and Conversion
+ IF( ln_KE_trd ) CALL trd_dyn( ua, va, jpdyn_ken, kt )
+ !
+ IF( ln_dyn_trd ) THEN ! 3D output: total momentum trends
+ zua(:,:,:) = ( ua(:,:,:) - ub(:,:,:) ) * z1_2dt
+ zva(:,:,:) = ( va(:,:,:) - vb(:,:,:) ) * z1_2dt
+ CALL iom_put( "utrd_tot", zua ) ! total momentum trends, except the asselin time filter
+ CALL iom_put( "vtrd_tot", zva )
+ ENDIF
+ !
+ zua(:,:,:) = un(:,:,:) ! save the now velocity before the asselin filter
+ zva(:,:,:) = vn(:,:,:) ! (caution: there will be a shift by 1 timestep in the
+ ! ! computation of the asselin filter trends)
+ ENDIF
+
+ ! Time filter and swap of dynamics arrays
+ ! ------------------------------------------
+ IF( neuler == 0 .AND. kt == nit000 ) THEN !* Euler at first time-step: only swap
+ DO jk = 1, jpkm1
+ un(:,:,jk) = ua(:,:,jk) ! un <-- ua
+ vn(:,:,jk) = va(:,:,jk)
+ END DO
+!jth limit velocities
+ IF (ln_ulimit) THEN
+ call dyn_limit_velocity (kt)
+ ENDIF
+ IF(.NOT.ln_linssh ) THEN
+ DO jk = 1, jpkm1
+ e3t_b(:,:,jk) = e3t_n(:,:,jk)
+ e3u_b(:,:,jk) = e3u_n(:,:,jk)
+ e3v_b(:,:,jk) = e3v_n(:,:,jk)
+ END DO
+ ENDIF
+ ELSE !* Leap-Frog : Asselin filter and swap
+ ! ! =============!
+ IF( ln_linssh ) THEN ! Fixed volume !
+ ! ! =============!
+ DO jk = 1, jpkm1
+ DO jj = 1, jpj
+ DO ji = 1, jpi
+ zuf = un(ji,jj,jk) + atfp * ( ub(ji,jj,jk) - 2._wp * un(ji,jj,jk) + ua(ji,jj,jk) )
+ zvf = vn(ji,jj,jk) + atfp * ( vb(ji,jj,jk) - 2._wp * vn(ji,jj,jk) + va(ji,jj,jk) )
+ !
+ ub(ji,jj,jk) = zuf ! ub <-- filtered velocity
+ vb(ji,jj,jk) = zvf
+ un(ji,jj,jk) = ua(ji,jj,jk) ! un <-- ua
+ vn(ji,jj,jk) = va(ji,jj,jk)
+ END DO
+ END DO
+ END DO
+!jth
+ IF (ln_ulimit) THEN
+ call dyn_limit_velocity (kt)
+ ENDIF
+ ! ! ================!
+ ELSE ! Variable volume !
+ ! ! ================!
+ ! Before scale factor at t-points
+ ! (used as a now filtered scale factor until the swap)
+ ! ----------------------------------------------------
+ IF( ln_dynspg_ts .AND. ln_bt_fw ) THEN ! No asselin filtering on thicknesses if forward time splitting
+ e3t_b(:,:,1:jpkm1) = e3t_n(:,:,1:jpkm1)
+ ELSE
+ DO jk = 1, jpkm1
+ e3t_b(:,:,jk) = e3t_n(:,:,jk) + atfp * ( e3t_b(:,:,jk) - 2._wp * e3t_n(:,:,jk) + e3t_a(:,:,jk) )
+ END DO
+ ! Add volume filter correction: compatibility with tracer advection scheme
+ ! => time filter + conservation correction (only at the first level)
+ zcoef = atfp * rdt * r1_rau0
+ IF ( .NOT. ln_isf ) THEN ! if no ice shelf melting
+ e3t_b(:,:,1) = e3t_b(:,:,1) - zcoef * ( emp_b(:,:) - emp(:,:) &
+ & - rnf_b(:,:) + rnf(:,:) ) * tmask(:,:,1)
+ ELSE ! if ice shelf melting
+ DO jj = 1, jpj
+ DO ji = 1, jpi
+ ikt = mikt(ji,jj)
+ e3t_b(ji,jj,ikt) = e3t_b(ji,jj,ikt) - zcoef * ( emp_b (ji,jj) - emp (ji,jj) &
+ & - rnf_b (ji,jj) + rnf (ji,jj) &
+ & + fwfisf_b(ji,jj) - fwfisf(ji,jj) ) * tmask(ji,jj,ikt)
+ END DO
+ END DO
+ END IF
+ ENDIF
+ !
+ IF( ln_dynadv_vec ) THEN ! Asselin filter applied on velocity
+ ! Before filtered scale factor at (u/v)-points
+ CALL dom_vvl_interpol( e3t_b(:,:,:), e3u_b(:,:,:), 'U' )
+ CALL dom_vvl_interpol( e3t_b(:,:,:), e3v_b(:,:,:), 'V' )
+ DO jk = 1, jpkm1
+ DO jj = 1, jpj
+ DO ji = 1, jpi
+ zuf = un(ji,jj,jk) + atfp * ( ub(ji,jj,jk) - 2._wp * un(ji,jj,jk) + ua(ji,jj,jk) )
+ zvf = vn(ji,jj,jk) + atfp * ( vb(ji,jj,jk) - 2._wp * vn(ji,jj,jk) + va(ji,jj,jk) )
+ !
+ ub(ji,jj,jk) = zuf ! ub <-- filtered velocity
+ vb(ji,jj,jk) = zvf
+ un(ji,jj,jk) = ua(ji,jj,jk) ! un <-- ua
+ vn(ji,jj,jk) = va(ji,jj,jk)
+ END DO
+ END DO
+ END DO
+!jth limit velocities
+ IF (ln_ulimit) THEN
+ call dyn_limit_velocity (kt)
+ ENDIF
+ !
+ ELSE ! Asselin filter applied on thickness weighted velocity
+ !
+ CALL wrk_alloc( jpi,jpj,jpk, ze3u_f, ze3v_f )
+ ! Before filtered scale factor at (u/v)-points stored in ze3u_f, ze3v_f
+ CALL dom_vvl_interpol( e3t_b(:,:,:), ze3u_f, 'U' )
+ CALL dom_vvl_interpol( e3t_b(:,:,:), ze3v_f, 'V' )
+ DO jk = 1, jpkm1
+ DO jj = 1, jpj
+ DO ji = 1, jpi
+ zue3a = e3u_a(ji,jj,jk) * ua(ji,jj,jk)
+ zve3a = e3v_a(ji,jj,jk) * va(ji,jj,jk)
+ zue3n = e3u_n(ji,jj,jk) * un(ji,jj,jk)
+ zve3n = e3v_n(ji,jj,jk) * vn(ji,jj,jk)
+ zue3b = e3u_b(ji,jj,jk) * ub(ji,jj,jk)
+ zve3b = e3v_b(ji,jj,jk) * vb(ji,jj,jk)
+ !
+ zuf = ( zue3n + atfp * ( zue3b - 2._wp * zue3n + zue3a ) ) / ze3u_f(ji,jj,jk)
+ zvf = ( zve3n + atfp * ( zve3b - 2._wp * zve3n + zve3a ) ) / ze3v_f(ji,jj,jk)
+ !
+ ub(ji,jj,jk) = zuf ! ub <-- filtered velocity
+ vb(ji,jj,jk) = zvf
+ un(ji,jj,jk) = ua(ji,jj,jk) ! un <-- ua
+ vn(ji,jj,jk) = va(ji,jj,jk)
+ END DO
+ END DO
+ END DO
+!jth limit velocities
+ IF (ln_ulimit) THEN
+ call dyn_limit_velocity (kt)
+ ENDIF
+ e3u_b(:,:,1:jpkm1) = ze3u_f(:,:,1:jpkm1) ! e3u_b <-- filtered scale factor
+ e3v_b(:,:,1:jpkm1) = ze3v_f(:,:,1:jpkm1)
+ !
+ CALL wrk_dealloc( jpi,jpj,jpk, ze3u_f, ze3v_f )
+ ENDIF
+ !
+ ENDIF
+ !
+ IF( ln_dynspg_ts .AND. ln_bt_fw ) THEN
+ ! Revert "before" velocities to time split estimate
+ ! Doing it here also means that asselin filter contribution is removed
+ zue(:,:) = e3u_b(:,:,1) * ub(:,:,1) * umask(:,:,1)
+ zve(:,:) = e3v_b(:,:,1) * vb(:,:,1) * vmask(:,:,1)
+ DO jk = 2, jpkm1
+ zue(:,:) = zue(:,:) + e3u_b(:,:,jk) * ub(:,:,jk) * umask(:,:,jk)
+ zve(:,:) = zve(:,:) + e3v_b(:,:,jk) * vb(:,:,jk) * vmask(:,:,jk)
+ END DO
+ DO jk = 1, jpkm1
+ ub(:,:,jk) = ub(:,:,jk) - (zue(:,:) * r1_hu_n(:,:) - un_b(:,:)) * umask(:,:,jk)
+ vb(:,:,jk) = vb(:,:,jk) - (zve(:,:) * r1_hv_n(:,:) - vn_b(:,:)) * vmask(:,:,jk)
+ END DO
+ ENDIF
+ !
+ ENDIF ! neuler =/0
+ !
+ ! Set "now" and "before" barotropic velocities for next time step:
+ ! JC: Would be more clever to swap variables than to make a full vertical
+ ! integration
+ !
+ !
+ IF(.NOT.ln_linssh ) THEN
+ hu_b(:,:) = e3u_b(:,:,1) * umask(:,:,1)
+ hv_b(:,:) = e3v_b(:,:,1) * vmask(:,:,1)
+ DO jk = 2, jpkm1
+ hu_b(:,:) = hu_b(:,:) + e3u_b(:,:,jk) * umask(:,:,jk)
+ hv_b(:,:) = hv_b(:,:) + e3v_b(:,:,jk) * vmask(:,:,jk)
+ END DO
+ r1_hu_b(:,:) = ssumask(:,:) / ( hu_b(:,:) + 1._wp - ssumask(:,:) )
+ r1_hv_b(:,:) = ssvmask(:,:) / ( hv_b(:,:) + 1._wp - ssvmask(:,:) )
+ ENDIF
+ !
+ un_b(:,:) = e3u_a(:,:,1) * un(:,:,1) * umask(:,:,1)
+ ub_b(:,:) = e3u_b(:,:,1) * ub(:,:,1) * umask(:,:,1)
+ vn_b(:,:) = e3v_a(:,:,1) * vn(:,:,1) * vmask(:,:,1)
+ vb_b(:,:) = e3v_b(:,:,1) * vb(:,:,1) * vmask(:,:,1)
+ DO jk = 2, jpkm1
+ un_b(:,:) = un_b(:,:) + e3u_a(:,:,jk) * un(:,:,jk) * umask(:,:,jk)
+ ub_b(:,:) = ub_b(:,:) + e3u_b(:,:,jk) * ub(:,:,jk) * umask(:,:,jk)
+ vn_b(:,:) = vn_b(:,:) + e3v_a(:,:,jk) * vn(:,:,jk) * vmask(:,:,jk)
+ vb_b(:,:) = vb_b(:,:) + e3v_b(:,:,jk) * vb(:,:,jk) * vmask(:,:,jk)
+ END DO
+ un_b(:,:) = un_b(:,:) * r1_hu_a(:,:)
+ vn_b(:,:) = vn_b(:,:) * r1_hv_a(:,:)
+ ub_b(:,:) = ub_b(:,:) * r1_hu_b(:,:)
+ vb_b(:,:) = vb_b(:,:) * r1_hv_b(:,:)
+ !
+ IF( .NOT.ln_dynspg_ts ) THEN ! output the barotropic currents
+ CALL iom_put( "ubar", un_b(:,:) )
+ CALL iom_put( "vbar", vn_b(:,:) )
+ ENDIF
+ IF( l_trddyn ) THEN ! 3D output: asselin filter trends on momentum
+ zua(:,:,:) = ( ub(:,:,:) - zua(:,:,:) ) * z1_2dt
+ zva(:,:,:) = ( vb(:,:,:) - zva(:,:,:) ) * z1_2dt
+ CALL trd_dyn( zua, zva, jpdyn_atf, kt )
+ ENDIF
+ !
+ IF(ln_ctl) CALL prt_ctl( tab3d_1=un, clinfo1=' nxt - Un: ', mask1=umask, &
+ & tab3d_2=vn, clinfo2=' Vn: ' , mask2=vmask )
+ !
+ IF( ln_dynspg_ts ) CALL wrk_dealloc( jpi,jpj, zue, zve )
+ IF( l_trddyn ) CALL wrk_dealloc( jpi,jpj,jpk, zua, zva )
+ !
+ IF( nn_timing == 1 ) CALL timing_stop('dyn_nxt')
+ !
+ END SUBROUTINE dyn_nxt
+
+ SUBROUTINE dyn_limit_velocity (kt)
+ ! limits maxming vlaues of un and vn by volume courant number
+ INTEGER, INTENT( in ) :: kt ! ocean time-step index
+ !
+ INTEGER :: ji, jj, jk ! dummy loop indices
+ REAL(wp) :: zzu,zplim,zmlim,isp,ism,zcn,ze3e1,zzcn,zcnn,idivp,idivm
+
+ !!=========================================================================
+!jth limit fluxes
+ zcn =cn_ulimit !0.9 ! maximum velocity inverse courant number
+ zcnn = cnn_ulimit !0.54 ! how much to reduce cn by in divergen flow
+
+ DO jk = 1, jpkm1
+ DO jj = 1, jpjm1
+ DO ji = 1, jpim1
+! U direction
+ zzu = un(ji,jj,jk)
+ ze3e1 = e3u_n(ji ,jj,jk) * e2u(ji ,jj)
+! ips is 1 if flow is positive othersize zero
+ isp = 0.5 * (sign(1.0_wp,zzu) + 1.0_wp )
+ ism = -0.5 * (sign(1.0_wp,zzu) - 1.0_wp )
+!idev is 1 if divergent flow otherwise zero
+ idivp = isp * -0.5 * (sign(1.0_wp, un(ji-1,jj,jk)) - 1.0_wp )
+ idivm = ism * 0.5 * (sign(1.0_wp, un(ji+1,jj,jk)) + 1.0_wp )
+ zzcn = (idivp+idivm)*(zcnn-1.0_wp)+1.0_wp
+ zzcn = zzcn * zcn
+ zplim = zzcn * (e3t_n(ji ,jj,jk) * e1t(ji ,jj) * e2t(ji ,jj)) / (2.0*rdt * ze3e1)*umask(ji,jj,jk)
+ zmlim = -zzcn * (e3t_n(ji+1,jj,jk) * e1t(ji+1,jj) * e2t(ji+1,jj)) / (2.0*rdt * ze3e1)*umask(ji,jj,jk)
+!limit currents
+ un(ji,jj,jk) = min ( zzu,zplim) * isp + max (zzu,zmlim) *ism
+! if (abs(un(ji,jj,jk)) .ge. 20.) write(666,*) un(ji,jj,jk),ze3e1, isp,ism, zzu,e3t_n(ji+1,jj,jk)
+! call flush(666)
+! if (ji+nimpp-1==122 .and. jj+njmpp-1==149 .and. jk == 1 ) write (6,*) 'uu',un(ji,jj,jk), ze3e1, isp,ism, zzu,e3t_n(ji+1,jj,jk),e1t(ji+1,jj), e2t(ji+1,jj),zmlim
+! call flush(6)
+! V direction
+ zzu = vn(ji,jj,jk)
+ ze3e1 = e3v_n(ji ,jj,jk) * e1v(ji ,jj)
+ isp = 0.5 * (sign(1.0_wp,zzu) + 1.0_wp )
+ ism = -0.5 * (sign(1.0_wp,zzu) - 1.0_wp )
+!idev is 1 if divergent flow otherwise zero
+ idivp = isp * -0.5 * (sign(1.0_wp, vn(ji,jj-1,jk)) - 1.0_wp )
+ idivm = ism * 0.5 * (sign(1.0_wp, vn(ji,jj+1,jk)) + 1.0_wp )
+ zzcn = (idivp+idivm)*(zcnn-1.0_wp)+1.0_wp
+ zzcn = zzcn * zcn
+ zplim = zzcn * (e3t_n(ji,jj ,jk) * e1t(ji,jj ) * e2t(ji,jj )) / (2.0*rdt * ze3e1)*vmask(ji,jj,jk)
+ zmlim = -zzcn * (e3t_n(ji,jj+1,jk) * e1t(ji,jj+1) * e2t(ji,jj+1)) / (2.0*rdt * ze3e1)*vmask(ji,jj,jk)
+ vn(ji,jj,jk) = min ( zzu,zplim) * isp + max (zzu,zmlim) *ism
+! if (abs(vn(ji,jj,jk)) .ge. 20.) write(666,*) vn(ji,jj,jk), ze3e1, isp,ism, zzu,e3t_n(ji,jj+1,jk)
+! call flush(666)
+! if (ji+nimpp-1==122 .and. jj+njmpp-1==149 .and. jk == 1 ) write (6,*) 'vv',vn(ji,jj,jk), ze3e1, isp,ism, zzu,e3t_n(ji,jj+1,jk)
+
+ ENDDO
+ ENDDO
+ ENDDO
+
+ END SUBROUTINE dyn_limit_velocity
+END MODULE dynnxt
diff --git a/MY_SRC/dynspg.F90 b/MY_SRC/dynspg.F90
new file mode 100644
index 0000000..3fa4160
--- /dev/null
+++ b/MY_SRC/dynspg.F90
@@ -0,0 +1,242 @@
+MODULE dynspg
+ !!======================================================================
+ !! *** MODULE dynspg ***
+ !! Ocean dynamics: surface pressure gradient control
+ !!======================================================================
+ !! History : 1.0 ! 2005-12 (C. Talandier, G. Madec, V. Garnier) Original code
+ !! 3.2 ! 2009-07 (R. Benshila) Suppression of rigid-lid option
+ !!----------------------------------------------------------------------
+
+ !!----------------------------------------------------------------------
+ !! dyn_spg : update the dynamics trend with surface pressure gradient
+ !! dyn_spg_init: initialization, namelist read, and parameters control
+ !!----------------------------------------------------------------------
+ USE oce ! ocean dynamics and tracers variables
+ USE dom_oce ! ocean space and time domain variables
+ USE c1d ! 1D vertical configuration
+ USE phycst ! physical constants
+ USE sbc_oce ! surface boundary condition: ocean
+ USE sbcapr ! surface boundary condition: atmospheric pressure
+ USE dynspg_exp ! surface pressure gradient (dyn_spg_exp routine)
+ USE dynspg_ts ! surface pressure gradient (dyn_spg_ts routine)
+ USE sbctide !
+ USE updtide !
+ USE trd_oce ! trends: ocean variables
+ USE trddyn ! trend manager: dynamics
+ !
+ USE prtctl ! Print control (prt_ctl routine)
+ USE in_out_manager ! I/O manager
+ USE lib_mpp ! MPP library
+ USE wrk_nemo ! Memory Allocation
+ USE timing ! Timing
+
+ IMPLICIT NONE
+ PRIVATE
+
+ PUBLIC dyn_spg ! routine called by step module
+ PUBLIC dyn_spg_init ! routine called by opa module
+
+ INTEGER :: nspg = 0 ! type of surface pressure gradient scheme defined from lk_dynspg_...
+!jth
+ LOGICAL, PUBLIC :: ln_ulimit
+ REAL(wp), PUBLIC :: cn_ulimit,cnn_ulimit
+!
+ ! ! Parameter to control the surface pressure gradient scheme
+ INTEGER, PARAMETER :: np_TS = 1 ! split-explicit time stepping (Time-Splitting)
+ INTEGER, PARAMETER :: np_EXP = 0 ! explicit time stepping
+ INTEGER, PARAMETER :: np_NO =-1 ! no surface pressure gradient, no scheme
+
+ !! * Substitutions
+# include "vectopt_loop_substitute.h90"
+ !!----------------------------------------------------------------------
+ !! NEMO/OPA 3.2 , LODYC-IPSL (2009)
+ !! $Id: dynspg.F90 7753 2017-03-03 11:46:59Z mocavero $
+ !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
+ !!----------------------------------------------------------------------
+CONTAINS
+
+ SUBROUTINE dyn_spg( kt )
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE dyn_spg ***
+ !!
+ !! ** Purpose : compute surface pressure gradient including the
+ !! atmospheric pressure forcing (ln_apr_dyn=T).
+ !!
+ !! ** Method : Two schemes:
+ !! - explicit : the spg is evaluated at now
+ !! - split-explicit : a time splitting technique is used
+ !!
+ !! ln_apr_dyn=T : the atmospheric pressure forcing is applied
+ !! as the gradient of the inverse barometer ssh:
+ !! apgu = - 1/rau0 di[apr] = 0.5*grav di[ssh_ib+ssh_ibb]
+ !! apgv = - 1/rau0 dj[apr] = 0.5*grav dj[ssh_ib+ssh_ibb]
+ !! Note that as all external forcing a time averaging over a two rdt
+ !! period is used to prevent the divergence of odd and even time step.
+ !!----------------------------------------------------------------------
+ INTEGER, INTENT(in ) :: kt ! ocean time-step index
+ !
+ INTEGER :: ji, jj, jk ! dummy loop indices
+ REAL(wp) :: z2dt, zg_2, zintp, zgrau0r ! temporary scalar
+ REAL(wp), POINTER, DIMENSION(:,:,:) :: ztrdu, ztrdv
+ REAL(wp), POINTER, DIMENSION(:,:) :: zpice
+ !!----------------------------------------------------------------------
+ !
+ IF( nn_timing == 1 ) CALL timing_start('dyn_spg')
+ !
+ IF( l_trddyn ) THEN ! temporary save of ta and sa trends
+ CALL wrk_alloc( jpi,jpj,jpk, ztrdu, ztrdv )
+ ztrdu(:,:,:) = ua(:,:,:)
+ ztrdv(:,:,:) = va(:,:,:)
+ ENDIF
+ !
+ IF( ln_apr_dyn & ! atmos. pressure
+ .OR. ( .NOT.ln_dynspg_ts .AND. (ln_tide_pot .AND. ln_tide) ) & ! tide potential (no time slitting)
+ .OR. nn_ice_embd == 2 ) THEN ! embedded sea-ice
+ !
+ DO jj = 2, jpjm1
+ DO ji = fs_2, fs_jpim1 ! vector opt.
+ spgu(ji,jj) = 0._wp
+ spgv(ji,jj) = 0._wp
+ END DO
+ END DO
+ !
+ IF( ln_apr_dyn .AND. .NOT.ln_dynspg_ts ) THEN !== Atmospheric pressure gradient (added later in time-split case) ==!
+ zg_2 = grav * 0.5
+ DO jj = 2, jpjm1 ! gradient of Patm using inverse barometer ssh
+ DO ji = fs_2, fs_jpim1 ! vector opt.
+ spgu(ji,jj) = spgu(ji,jj) + zg_2 * ( ssh_ib (ji+1,jj) - ssh_ib (ji,jj) &
+ & + ssh_ibb(ji+1,jj) - ssh_ibb(ji,jj) ) * r1_e1u(ji,jj)
+ spgv(ji,jj) = spgv(ji,jj) + zg_2 * ( ssh_ib (ji,jj+1) - ssh_ib (ji,jj) &
+ & + ssh_ibb(ji,jj+1) - ssh_ibb(ji,jj) ) * r1_e2v(ji,jj)
+ END DO
+ END DO
+ ENDIF
+ !
+ ! !== tide potential forcing term ==!
+ IF( .NOT.ln_dynspg_ts .AND. ( ln_tide_pot .AND. ln_tide ) ) THEN ! N.B. added directly at sub-time-step in ts-case
+ !
+ CALL upd_tide( kt ) ! update tide potential
+ !
+ DO jj = 2, jpjm1 ! add tide potential forcing
+ DO ji = fs_2, fs_jpim1 ! vector opt.
+ spgu(ji,jj) = spgu(ji,jj) + grav * ( pot_astro(ji+1,jj) - pot_astro(ji,jj) ) * r1_e1u(ji,jj)
+ spgv(ji,jj) = spgv(ji,jj) + grav * ( pot_astro(ji,jj+1) - pot_astro(ji,jj) ) * r1_e2v(ji,jj)
+ END DO
+ END DO
+ ENDIF
+ !
+ IF( nn_ice_embd == 2 ) THEN !== embedded sea ice: Pressure gradient due to snow-ice mass ==!
+ CALL wrk_alloc( jpi,jpj, zpice )
+ !
+ zintp = REAL( MOD( kt-1, nn_fsbc ) ) / REAL( nn_fsbc )
+ zgrau0r = - grav * r1_rau0
+ zpice(:,:) = ( zintp * snwice_mass(:,:) + ( 1.- zintp ) * snwice_mass_b(:,:) ) * zgrau0r
+ DO jj = 2, jpjm1
+ DO ji = fs_2, fs_jpim1 ! vector opt.
+ spgu(ji,jj) = spgu(ji,jj) + ( zpice(ji+1,jj) - zpice(ji,jj) ) * r1_e1u(ji,jj)
+ spgv(ji,jj) = spgv(ji,jj) + ( zpice(ji,jj+1) - zpice(ji,jj) ) * r1_e2v(ji,jj)
+ END DO
+ END DO
+ !
+ CALL wrk_dealloc( jpi,jpj, zpice )
+ ENDIF
+ !
+ DO jk = 1, jpkm1 !== Add all terms to the general trend
+ DO jj = 2, jpjm1
+ DO ji = fs_2, fs_jpim1 ! vector opt.
+ ua(ji,jj,jk) = ua(ji,jj,jk) + spgu(ji,jj)
+ va(ji,jj,jk) = va(ji,jj,jk) + spgv(ji,jj)
+ END DO
+ END DO
+ END DO
+ !
+!!gm add here a call to dyn_trd for ice pressure gradient, the surf pressure trends ????
+ !
+ ENDIF
+ !
+ SELECT CASE ( nspg ) !== surface pressure gradient computed and add to the general trend ==!
+ CASE ( np_EXP ) ; CALL dyn_spg_exp( kt ) ! explicit
+ CASE ( np_TS ) ; CALL dyn_spg_ts ( kt ) ! time-splitting
+ END SELECT
+ !
+ IF( l_trddyn ) THEN ! save the surface pressure gradient trends for further diagnostics
+ ztrdu(:,:,:) = ua(:,:,:) - ztrdu(:,:,:)
+ ztrdv(:,:,:) = va(:,:,:) - ztrdv(:,:,:)
+ CALL trd_dyn( ztrdu, ztrdv, jpdyn_spg, kt )
+ CALL wrk_dealloc( jpi,jpj,jpk, ztrdu, ztrdv )
+ ENDIF
+ ! ! print mean trends (used for debugging)
+ IF(ln_ctl) CALL prt_ctl( tab3d_1=ua, clinfo1=' spg - Ua: ', mask1=umask, &
+ & tab3d_2=va, clinfo2= ' Va: ', mask2=vmask, clinfo3='dyn' )
+ !
+ IF( nn_timing == 1 ) CALL timing_stop('dyn_spg')
+ !
+ END SUBROUTINE dyn_spg
+
+
+ SUBROUTINE dyn_spg_init
+ !!---------------------------------------------------------------------
+ !! *** ROUTINE dyn_spg_init ***
+ !!
+ !! ** Purpose : Control the consistency between namelist options for
+ !! surface pressure gradient schemes
+ !!----------------------------------------------------------------------
+ INTEGER :: ioptio, ios ! local integers
+ !
+ NAMELIST/namdyn_spg/ ln_dynspg_exp , ln_dynspg_ts, &
+ & ln_bt_fw, ln_bt_av , ln_bt_auto , &
+ & nn_baro , rn_bt_cmax, nn_bt_flt,ln_ulimit,cn_ulimit,cnn_ulimit
+ !!----------------------------------------------------------------------
+ !
+ IF( nn_timing == 1 ) CALL timing_start('dyn_spg_init')
+ !
+ REWIND( numnam_ref ) ! Namelist namdyn_spg in reference namelist : Free surface
+ READ ( numnam_ref, namdyn_spg, IOSTAT = ios, ERR = 901)
+901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namdyn_spg in reference namelist', lwp )
+ !
+ REWIND( numnam_cfg ) ! Namelist namdyn_spg in configuration namelist : Free surface
+ READ ( numnam_cfg, namdyn_spg, IOSTAT = ios, ERR = 902 )
+902 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namdyn_spg in configuration namelist', lwp )
+ IF(lwm) WRITE ( numond, namdyn_spg )
+ !
+ IF(lwp) THEN ! Namelist print
+ WRITE(numout,*)
+ WRITE(numout,*) 'dyn_spg_init : choice of the surface pressure gradient scheme'
+ WRITE(numout,*) '~~~~~~~~~~~'
+ WRITE(numout,*) ' Explicit free surface ln_dynspg_exp = ', ln_dynspg_exp
+ WRITE(numout,*) ' Free surface with time splitting ln_dynspg_ts = ', ln_dynspg_ts
+
+ write(numout,*) ' Limit velocities ln_ulimit = ',ln_ulimit
+ write(numout,*) ' Limit velocities max inverse Courant number = ',cn_ulimit
+ write(numout,*) ' Limit velocities multiplier for divergant flow = ',cnn_ulimit
+
+ ENDIF
+ ! ! Control of surface pressure gradient scheme options
+ nspg = np_NO ; ioptio = 0
+ IF( ln_dynspg_exp ) THEN ; nspg = np_EXP ; ioptio = ioptio + 1 ; ENDIF
+ IF( ln_dynspg_ts ) THEN ; nspg = np_TS ; ioptio = ioptio + 1 ; ENDIF
+ !
+ IF( ioptio > 1 ) CALL ctl_stop( 'Choose only one surface pressure gradient scheme' )
+ IF( ioptio == 0 ) CALL ctl_warn( 'NO surface pressure gradient trend in momentum Eqs.' )
+ IF( ln_dynspg_exp .AND. ln_isfcav ) &
+ & CALL ctl_stop( ' dynspg_exp not tested with ice shelf cavity ' )
+ !
+ IF(lwp) THEN
+ WRITE(numout,*)
+ IF( nspg == np_EXP ) WRITE(numout,*) ' ===>> explicit free surface'
+ IF( nspg == np_TS ) WRITE(numout,*) ' ===>> free surface with time splitting scheme'
+ IF( nspg == np_NO ) WRITE(numout,*) ' ===>> No surface surface pressure gradient trend in momentum Eqs.'
+ ENDIF
+ !
+ IF( nspg == np_TS ) THEN ! split-explicit scheme initialisation
+ CALL dyn_spg_ts_init ! do it first: set nn_baro used to allocate some arrays later on
+ IF( dyn_spg_ts_alloc() /= 0 ) CALL ctl_stop('STOP', 'dyn_spg_init: failed to allocate dynspg_ts arrays' )
+ IF( neuler/=0 .AND. ln_bt_fw ) CALL ts_rst( nit000, 'READ' )
+ ENDIF
+ !
+ IF( nn_timing == 1 ) CALL timing_stop('dyn_spg_init')
+ !
+ END SUBROUTINE dyn_spg_init
+
+ !!======================================================================
+END MODULE dynspg
diff --git a/MY_SRC/par_oce.F90 b/MY_SRC/par_oce.F90
new file mode 100755
index 0000000..faf0b9c
--- /dev/null
+++ b/MY_SRC/par_oce.F90
@@ -0,0 +1,90 @@
+MODULE par_oce
+ !!======================================================================
+ !! *** par_oce ***
+ !! Ocean : set the ocean parameters
+ !!======================================================================
+ !! History : OPA ! 1991 (Imbard, Levy, Madec) Original code
+ !! NEMO 1.0 ! 2004-01 (G. Madec, J.-M. Molines) Free form and module
+ !! 3.3 ! 2010-09 (C. Ethe) TRA-TRC merge: add jpts, jp_tem & jp_sal
+ !!----------------------------------------------------------------------
+ USE par_kind ! kind parameters
+
+ IMPLICIT NONE
+ PUBLIC
+
+ !!----------------------------------------------------------------------
+ !! namcfg namelist parameters
+ !!----------------------------------------------------------------------
+ LOGICAL :: ln_read_cfg !: (=T) read the domain configuration file or (=F) not
+ CHARACTER(lc) :: cn_domcfg !: filename the configuration file to be read
+ LOGICAL :: ln_write_cfg !: (=T) create the domain configuration file
+ CHARACTER(lc) :: cn_domcfg_out !: filename the configuration file to be read
+ !
+ LOGICAL :: ln_use_jattr !: input file read offset
+ ! ! Use file global attribute: open_ocean_jstart to determine start j-row
+ ! ! when reading input from those netcdf files that have the
+ ! ! attribute defined. This is designed to enable input files associated
+ ! ! with the extended grids used in the under ice shelf configurations to
+ ! ! be used without redundant rows when the ice shelves are not in use.
+ !
+
+ !!---------------------------------------------------------------------
+ !! Domain Matrix size
+ !!---------------------------------------------------------------------
+ ! configuration name & resolution (required only in ORCA family case)
+ CHARACTER(lc) :: cn_cfg !: name of the configuration
+ INTEGER :: nn_cfg !: resolution of the configuration
+
+ ! global domain size !!! * total computational domain *
+ INTEGER :: jpiglo !: 1st dimension of global domain --> i-direction
+ INTEGER :: jpjglo !: 2nd - - --> j-direction
+ INTEGER :: jpkglo !: 3nd - - --> k levels
+
+#if defined key_agrif
+
+!!gm BUG ? I'm surprised by the calculation below of nbcellsx and nbcellsy before jpiglo,jpjglo
+!!gm has been assigned to a value....
+!!gm
+
+ ! global domain size for AGRIF !!! * total AGRIF computational domain *
+ INTEGER, PUBLIC, PARAMETER :: nbghostcells = 1 !: number of ghost cells
+ INTEGER, PUBLIC :: nbcellsx = jpiglo - 2 - 2*nbghostcells !: number of cells in i-direction
+ INTEGER, PUBLIC :: nbcellsy = jpjglo - 2 - 2*nbghostcells !: number of cells in j-direction
+#endif
+
+ ! local domain size !!! * local computational domain *
+ INTEGER, PUBLIC :: jpi ! = ( jpiglo-2*jpreci + (jpni-1) ) / jpni + 2*jpreci !: first dimension
+ INTEGER, PUBLIC :: jpj ! = ( jpjglo-2*jprecj + (jpnj-1) ) / jpnj + 2*jprecj !: second dimension
+ INTEGER, PUBLIC :: jpk ! = jpkglo
+ INTEGER, PUBLIC :: jpim1 ! = jpi-1 !: inner domain indices
+ INTEGER, PUBLIC :: jpjm1 ! = jpj-1 !: - - -
+ INTEGER, PUBLIC :: jpkm1 ! = jpk-1 !: - - -
+ INTEGER, PUBLIC :: jpij ! = jpi*jpj !: jpi x jpj
+
+ !!---------------------------------------------------------------------
+ !! Active tracer parameters
+ !!---------------------------------------------------------------------
+ INTEGER, PUBLIC, PARAMETER :: jpts = 2 !: Number of active tracers (=2, i.e. T & S )
+ INTEGER, PUBLIC, PARAMETER :: jp_tem = 1 !: indice for temperature
+ INTEGER, PUBLIC, PARAMETER :: jp_sal = 2 !: indice for salinity
+ INTEGER, PUBLIC, PARAMETER :: jp_dep = 3 !: indice for depth
+ INTEGER, PUBLIC, PARAMETER :: jp_msk = 4 !: indice for depth
+
+ !!----------------------------------------------------------------------
+ !! Domain decomposition
+ !!----------------------------------------------------------------------
+ !! if we dont use massively parallel computer (parameters jpni=jpnj=1) so jpiglo=jpi and jpjglo=jpj
+ INTEGER, PUBLIC :: jpni !: number of processors following i
+ INTEGER, PUBLIC :: jpnj !: number of processors following j
+ INTEGER, PUBLIC :: jpnij !: nb of local domain = nb of processors ( <= jpni x jpnj )
+ INTEGER, PUBLIC, PARAMETER :: jpr2di = 0 !: number of columns for extra outer halo
+ INTEGER, PUBLIC, PARAMETER :: jpr2dj = 0 !: number of rows for extra outer halo
+ INTEGER, PUBLIC, PARAMETER :: jpreci = 1 !: number of columns for overlap
+ INTEGER, PUBLIC, PARAMETER :: jprecj = 1 !: number of rows for overlap
+
+ !!----------------------------------------------------------------------
+ !! NEMO/OPA 4.0 , NEMO Consortium (2016)
+ !! $Id: par_oce.F90 7646 2017-02-06 09:25:03Z timgraham $
+ !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
+ !!======================================================================
+END MODULE par_oce
diff --git a/MY_SRC/sbctide.F90 b/MY_SRC/sbctide.F90
new file mode 100755
index 0000000..ea6d4fe
--- /dev/null
+++ b/MY_SRC/sbctide.F90
@@ -0,0 +1,137 @@
+MODULE sbctide
+ !!======================================================================
+ !! *** MODULE sbctide ***
+ !! Initialization of tidal forcing
+ !!======================================================================
+ !! History : 9.0 ! 2007 (O. Le Galloudec) Original code
+ !!----------------------------------------------------------------------
+ USE oce ! ocean dynamics and tracers variables
+ USE dom_oce ! ocean space and time domain
+ USE phycst ! physical constant
+ USE daymod ! calandar
+ USE tideini !
+ !
+ USE in_out_manager ! I/O units
+ USE iom ! xIOs server
+ USE ioipsl ! NetCDF IPSL library
+ USE lbclnk ! ocean lateral boundary conditions (or mpp link)
+ ! NB - to access love number
+ USE bdytides
+ ! END NB
+
+ IMPLICIT NONE
+ PUBLIC
+
+ REAL(wp), PUBLIC, ALLOCATABLE, DIMENSION(:,:) :: pot_astro !
+
+ !!----------------------------------------------------------------------
+ !! tidal potential
+ !!----------------------------------------------------------------------
+ !! sbc_tide :
+ !! tide_init_potential :
+ !!----------------------------------------------------------------------
+
+ REAL(wp), ALLOCATABLE, DIMENSION(:,:,:) :: amp_pot, phi_pot
+
+ !!----------------------------------------------------------------------
+ !! NEMO/OPA 3.5 , NEMO Consortium (2013)
+ !! $Id: sbctide.F90 7646 2017-02-06 09:25:03Z timgraham $
+ !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
+ !!----------------------------------------------------------------------
+CONTAINS
+
+ SUBROUTINE sbc_tide( kt )
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE sbc_tide ***
+ !!----------------------------------------------------------------------
+ INTEGER, INTENT( in ) :: kt ! ocean time-step
+ INTEGER :: jk ! dummy loop index
+ INTEGER :: nsec_day_orig ! Temporary variable
+ !!----------------------------------------------------------------------
+
+ IF( nsec_day == NINT(0.5_wp * rdt) .OR. kt == nit000 ) THEN ! start a new day
+ !
+ IF( kt == nit000 ) THEN
+ ALLOCATE( amp_pot(jpi,jpj,nb_harmo), &
+ & phi_pot(jpi,jpj,nb_harmo), pot_astro(jpi,jpj) )
+ ENDIF
+ !
+ amp_pot(:,:,:) = 0._wp
+ phi_pot(:,:,:) = 0._wp
+ pot_astro(:,:) = 0._wp
+ !
+ ! If the run does not start from midnight then need to initialise tides
+ ! at the start of the current day (only occurs when kt==nit000)
+ ! Temporarily set nsec_day to beginning of day.
+ nsec_day_orig = nsec_day
+ IF ( nsec_day /= NINT(0.5_wp * rdt) ) THEN
+ kt_tide = kt - (nsec_day - 0.5_wp * rdt)/rdt
+ nsec_day = NINT(0.5_wp * rdt)
+ ELSE
+ kt_tide = kt
+ ENDIF
+ CALL tide_harmo( omega_tide, v0tide, utide, ftide, ntide, nb_harmo )
+ !
+ !
+ IF(lwp) THEN
+ WRITE(numout,*)
+ WRITE(numout,*) 'sbc_tide : Update of the components and (re)Init. the potential at kt=', kt
+ WRITE(numout,*) '~~~~~~~~ '
+ DO jk = 1, nb_harmo
+ WRITE(numout,*) Wave(ntide(jk))%cname_tide, utide(jk), ftide(jk), v0tide(jk), omega_tide(jk)
+ END DO
+ ENDIF
+ !
+ IF( ln_tide_pot ) CALL tide_init_potential
+ !
+ ! Reset nsec_day
+ nsec_day = nsec_day_orig
+ ENDIF
+ !
+ END SUBROUTINE sbc_tide
+
+
+ SUBROUTINE tide_init_potential
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE tide_init_potential ***
+ !!----------------------------------------------------------------------
+ INTEGER :: ji, jj, jk ! dummy loop indices
+ REAL(wp) :: zcons, ztmp1, ztmp2, zlat, zlon, ztmp, zamp, zcs ! local scalar
+ !!----------------------------------------------------------------------
+
+ DO jk = 1, nb_harmo
+!--- NB 11/2017
+! love number now provides in tide namelist
+ zcons = dn_love_number * Wave(ntide(jk))%equitide * ftide(jk)
+! ORIGINAL zcons = 0.7_wp * Wave(ntide(jk))%equitide * ftide(jk)
+!--- END NB
+ DO ji = 1, jpi
+ DO jj = 1, jpj
+ ztmp1 = amp_pot(ji,jj,jk) * COS( phi_pot(ji,jj,jk) )
+ ztmp2 = -amp_pot(ji,jj,jk) * SIN( phi_pot(ji,jj,jk) )
+ zlat = gphit(ji,jj)*rad !! latitude en radian
+ zlon = glamt(ji,jj)*rad !! longitude en radian
+ ztmp = v0tide(jk) + utide(jk) + Wave(ntide(jk))%nutide * zlon
+ ! le potentiel est composé des effets des astres:
+ IF ( Wave(ntide(jk))%nutide == 1 ) THEN ; zcs = zcons * SIN( 2._wp*zlat )
+ ELSEIF( Wave(ntide(jk))%nutide == 2 ) THEN ; zcs = zcons * COS( zlat )**2
+!--- NB 11/2017
+! Add tide potential for long period tides
+ ELSEIF( Wave(ntide(jk))%nutide == 0 ) THEN ; zcs = zcons * (0.5_wp-1.5_wp*SIN(zlat)**2._wp)
+!--- END NB
+ ELSE ; zcs = 0._wp
+ ENDIF
+ ztmp1 = ztmp1 + zcs * COS( ztmp )
+ ztmp2 = ztmp2 - zcs * SIN( ztmp )
+ zamp = SQRT( ztmp1*ztmp1 + ztmp2*ztmp2 )
+ amp_pot(ji,jj,jk) = zamp
+ phi_pot(ji,jj,jk) = ATAN2( -ztmp2 / MAX( 1.e-10_wp , zamp ) , &
+ & ztmp1 / MAX( 1.e-10_wp, zamp ) )
+ END DO
+ END DO
+ END DO
+ !
+ END SUBROUTINE tide_init_potential
+
+ !!======================================================================
+END MODULE sbctide
diff --git a/MY_SRC/step.F90 b/MY_SRC/step.F90
new file mode 100755
index 0000000..fe08ea3
--- /dev/null
+++ b/MY_SRC/step.F90
@@ -0,0 +1,364 @@
+MODULE step
+ !!======================================================================
+ !! *** MODULE step ***
+ !! Time-stepping : manager of the ocean, tracer and ice time stepping
+ !!======================================================================
+ !! History : OPA ! 1991-03 (G. Madec) Original code
+ !! - ! 1991-11 (G. Madec)
+ !! - ! 1992-06 (M. Imbard) add a first output record
+ !! - ! 1996-04 (G. Madec) introduction of dynspg
+ !! - ! 1996-04 (M.A. Foujols) introduction of passive tracer
+ !! 8.0 ! 1997-06 (G. Madec) new architecture of call
+ !! 8.2 ! 1997-06 (G. Madec, M. Imbard, G. Roullet) free surface
+ !! - ! 1999-02 (G. Madec, N. Grima) hpg implicit
+ !! - ! 2000-07 (J-M Molines, M. Imbard) Open Bondary Conditions
+ !! NEMO 1.0 ! 2002-06 (G. Madec) free form, suppress macro-tasking
+ !! - ! 2004-08 (C. Talandier) New trends organization
+ !! - ! 2005-01 (C. Ethe) Add the KPP closure scheme
+ !! - ! 2005-11 (G. Madec) Reorganisation of tra and dyn calls
+ !! - ! 2006-01 (L. Debreu, C. Mazauric) Agrif implementation
+ !! - ! 2006-07 (S. Masson) restart using iom
+ !! 3.2 ! 2009-02 (G. Madec, R. Benshila) reintroduicing z*-coordinate
+ !! - ! 2009-06 (S. Masson, G. Madec) TKE restart compatible with key_cpl
+ !! 3.3 ! 2010-05 (K. Mogensen, A. Weaver, M. Martin, D. Lea) Assimilation interface
+ !! - ! 2010-10 (C. Ethe, G. Madec) reorganisation of initialisation phase + merge TRC-TRA
+ !! 3.4 ! 2011-04 (G. Madec, C. Ethe) Merge of dtatem and dtasal
+ !! 3.6 ! 2012-07 (J. Simeon, G. Madec. C. Ethe) Online coarsening of outputs
+ !! 3.6 ! 2014-04 (F. Roquet, G. Madec) New equations of state
+ !! 3.6 ! 2014-10 (E. Clementi, P. Oddo) Add Qiao vertical mixing in case of waves
+ !! 3.7 ! 2014-10 (G. Madec) LDF simplication
+ !! - ! 2014-12 (G. Madec) remove KPP scheme
+ !! - ! 2015-11 (J. Chanut) free surface simplification
+ !!----------------------------------------------------------------------
+
+ !!----------------------------------------------------------------------
+ !! stp : OPA system time-stepping
+ !!----------------------------------------------------------------------
+ USE step_oce ! time stepping definition modules
+ !
+ USE iom ! xIOs server
+
+ IMPLICIT NONE
+ PRIVATE
+
+ PUBLIC stp ! called by nemogcm.F90
+
+ !!----------------------------------------------------------------------
+ !! NEMO/OPA 3.7 , NEMO Consortium (2015)
+ !! $Id: step.F90 7753 2017-03-03 11:46:59Z mocavero $
+ !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
+ !!----------------------------------------------------------------------
+CONTAINS
+
+#if defined key_agrif
+ RECURSIVE SUBROUTINE stp( )
+ INTEGER :: kstp ! ocean time-step index
+#else
+ SUBROUTINE stp( kstp )
+ INTEGER, INTENT(in) :: kstp ! ocean time-step index
+#endif
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE stp ***
+ !!
+ !! ** Purpose : - Time stepping of OPA (momentum and active tracer eqs.)
+ !! - Time stepping of LIM (dynamic and thermodynamic eqs.)
+ !! - Tme stepping of TRC (passive tracer eqs.)
+ !!
+ !! ** Method : -1- Update forcings and data
+ !! -2- Update ocean physics
+ !! -3- Compute the t and s trends
+ !! -4- Update t and s
+ !! -5- Compute the momentum trends
+ !! -6- Update the horizontal velocity
+ !! -7- Compute the diagnostics variables (rd,N2, hdiv,w)
+ !! -8- Outputs and diagnostics
+ !!----------------------------------------------------------------------
+ INTEGER :: ji,jj,jk ! dummy loop indice
+ INTEGER :: indic ! error indicator if < 0
+ INTEGER :: kcall ! optional integer argument (dom_vvl_sf_nxt)
+ !! ---------------------------------------------------------------------
+#if defined key_agrif
+ kstp = nit000 + Agrif_Nb_Step()
+ IF( lk_agrif_debug ) THEN
+ IF( Agrif_Root() .and. lwp) WRITE(*,*) '---'
+ IF(lwp) WRITE(*,*) 'Grid Number', Agrif_Fixed(),' time step ', kstp, 'int tstep', Agrif_NbStepint()
+ ENDIF
+ IF( kstp == nit000 + 1 ) lk_agrif_fstep = .FALSE.
+# if defined key_iomput
+ IF( Agrif_Nbstepint() == 0 ) CALL iom_swap( cxios_context )
+# endif
+#endif
+ !>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+ ! update I/O and calendar
+ !<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
+ indic = 0 ! reset to no error condition
+
+ IF( kstp == nit000 ) THEN ! initialize IOM context (must be done after nemo_init for AGRIF+XIOS+OASIS)
+ CALL iom_init( cxios_context ) ! for model grid (including passible AGRIF zoom)
+ IF( ln_crs ) CALL iom_init( TRIM(cxios_context)//"_crs" ) ! for coarse grid
+ ENDIF
+ IF( kstp /= nit000 ) CALL day( kstp ) ! Calendar (day was already called at nit000 in day_init)
+ CALL iom_setkt( kstp - nit000 + 1, cxios_context ) ! tell IOM we are at time step kstp
+ IF( ln_crs ) CALL iom_setkt( kstp - nit000 + 1, TRIM(cxios_context)//"_crs" ) ! tell IOM we are at time step kstp
+
+ !>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+ ! Update external forcing (tides, open boundaries, and surface boundary condition (including sea-ice)
+ !<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
+ IF( ln_tide ) CALL sbc_tide( kstp ) ! update tide potential
+ IF( ln_apr_dyn ) CALL sbc_apr ( kstp ) ! atmospheric pressure (NB: call before bdy_dta which needs ssh_ib)
+ IF( ln_bdy ) CALL bdy_dta ( kstp, time_offset=+1 ) ! update dynamic & tracer data at open boundaries
+ CALL sbc ( kstp ) ! Sea Boundary Condition (including sea-ice)
+
+ !>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+ ! Update stochastic parameters and random T/S fluctuations
+ !>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+ IF( ln_sto_eos ) CALL sto_par( kstp ) ! Stochastic parameters
+ IF( ln_sto_eos ) CALL sto_pts( tsn ) ! Random T/S fluctuations
+
+ !>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+ ! Ocean physics update (ua, va, tsa used as workspace)
+ !<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
+ ! THERMODYNAMICS
+ CALL eos_rab( tsb, rab_b ) ! before local thermal/haline expension ratio at T-points
+ CALL eos_rab( tsn, rab_n ) ! now local thermal/haline expension ratio at T-points
+ CALL bn2 ( tsb, rab_b, rn2b ) ! before Brunt-Vaisala frequency
+ CALL bn2 ( tsn, rab_n, rn2 ) ! now Brunt-Vaisala frequency
+
+ !
+ ! VERTICAL PHYSICS
+ CALL zdf_bfr( kstp ) ! bottom friction (if quadratic)
+ ! ! Vertical eddy viscosity and diffusivity coefficients
+ IF( lk_zdfric ) CALL zdf_ric ( kstp ) ! Richardson number dependent Kz
+ IF( lk_zdftke ) CALL zdf_tke ( kstp ) ! TKE closure scheme for Kz
+ IF( lk_zdfgls ) CALL zdf_gls ( kstp ) ! GLS closure scheme for Kz
+ IF( ln_zdfqiao ) CALL zdf_qiao( kstp ) ! Qiao vertical mixing
+ !
+ IF( lk_zdfcst ) THEN ! Constant Kz (reset avt, avm[uv] to the background value)
+ avt (:,:,:) = rn_avt0 * wmask (:,:,:)
+ avmu(:,:,:) = rn_avm0 * wumask(:,:,:)
+ avmv(:,:,:) = rn_avm0 * wvmask(:,:,:)
+ ENDIF
+
+ IF( ln_rnf_mouth ) THEN ! increase diffusivity at rivers mouths
+ DO jk = 2, nkrnf ; avt(:,:,jk) = avt(:,:,jk) + 2._wp * rn_avt_rnf * rnfmsk(:,:) * tmask(:,:,jk) ; END DO
+ ENDIF
+ IF( ln_zdfevd ) CALL zdf_evd( kstp ) ! enhanced vertical eddy diffusivity
+
+ IF( lk_zdftmx ) CALL zdf_tmx( kstp ) ! tidal vertical mixing
+
+ IF( lk_zdfddm ) CALL zdf_ddm( kstp ) ! double diffusive mixing
+
+ CALL zdf_mxl( kstp ) ! mixed layer depth
+
+ ! write TKE or GLS information in the restart file
+ IF( lrst_oce .AND. lk_zdftke ) CALL tke_rst( kstp, 'WRITE' )
+ IF( lrst_oce .AND. lk_zdfgls ) CALL gls_rst( kstp, 'WRITE' )
+ !
+ ! LATERAL PHYSICS
+ !
+ IF( l_ldfslp ) THEN ! slope of lateral mixing
+ CALL eos( tsb, rhd, gdept_0(:,:,:) ) ! before in situ density
+
+ IF( ln_zps .AND. .NOT. ln_isfcav) &
+ & CALL zps_hde ( kstp, jpts, tsb, gtsu, gtsv, & ! Partial steps: before horizontal gradient
+ & rhd, gru , grv ) ! of t, s, rd at the last ocean level
+
+ IF( ln_zps .AND. ln_isfcav) &
+ & CALL zps_hde_isf( kstp, jpts, tsb, gtsu, gtsv, gtui, gtvi, & ! Partial steps for top cell (ISF)
+ & rhd, gru , grv , grui, grvi ) ! of t, s, rd at the first ocean level
+ IF( ln_traldf_triad ) THEN
+ CALL ldf_slp_triad( kstp ) ! before slope for triad operator
+ ELSE
+ CALL ldf_slp ( kstp, rhd, rn2b ) ! before slope for standard operator
+ ENDIF
+ ENDIF
+ ! ! eddy diffusivity coeff.
+ IF( l_ldftra_time .OR. l_ldfeiv_time ) CALL ldf_tra( kstp ) ! and/or eiv coeff.
+ IF( l_ldfdyn_time ) CALL ldf_dyn( kstp ) ! eddy viscosity coeff.
+
+ !>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+ ! Ocean dynamics : hdiv, ssh, e3, u, v, w
+ !<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
+
+ CALL ssh_nxt ( kstp ) ! after ssh (includes call to div_hor)
+ IF(.NOT.ln_linssh ) CALL dom_vvl_sf_nxt( kstp ) ! after vertical scale factors
+ CALL wzv ( kstp ) ! now cross-level velocity
+ CALL eos ( tsn, rhd, rhop, gdept_n(:,:,:) ) ! now in situ density for hpg computation
+
+!!jc: fs simplification
+!!jc: lines below are useless if ln_linssh=F. Keep them here (which maintains a bug if ln_linssh=T and ln_zps=T, cf ticket #1636)
+!! but ensures reproductible results
+!! with previous versions using split-explicit free surface
+ IF( ln_zps .AND. .NOT. ln_isfcav ) &
+ & CALL zps_hde ( kstp, jpts, tsn, gtsu, gtsv, & ! Partial steps: before horizontal gradient
+ & rhd, gru , grv ) ! of t, s, rd at the last ocean level
+ IF( ln_zps .AND. ln_isfcav ) &
+ & CALL zps_hde_isf( kstp, jpts, tsn, gtsu, gtsv, gtui, gtvi, & ! Partial steps for top cell (ISF)
+ & rhd, gru , grv , grui, grvi ) ! of t, s, rd at the first ocean level
+!!jc: fs simplification
+
+ ua(:,:,:) = 0._wp ! set dynamics trends to zero
+ va(:,:,:) = 0._wp
+
+ IF( lk_asminc .AND. ln_asmiau .AND. ln_dyninc ) &
+ & CALL dyn_asm_inc ( kstp ) ! apply dynamics assimilation increment
+ IF( ln_bdy ) CALL bdy_dyn3d_dmp ( kstp ) ! bdy damping trends
+#if defined key_agrif
+ IF(.NOT. Agrif_Root()) &
+ & CALL Agrif_Sponge_dyn ! momentum sponge
+#endif
+ CALL dyn_adv ( kstp ) ! advection (vector or flux form)
+ CALL dyn_vor ( kstp ) ! vorticity term including Coriolis
+ CALL dyn_ldf ( kstp ) ! lateral mixing
+ CALL dyn_hpg ( kstp ) ! horizontal gradient of Hydrostatic pressure
+ CALL dyn_spg ( kstp ) ! surface pressure gradient
+
+ ! With split-explicit free surface, since now transports have been updated and ssha as well
+ IF( ln_dynspg_ts ) THEN ! vertical scale factors and vertical velocity need to be updated
+ CALL div_hor ( kstp ) ! Horizontal divergence (2nd call in time-split case)
+ IF(.NOT.ln_linssh) CALL dom_vvl_sf_nxt( kstp, kcall=2 ) ! after vertical scale factors (update depth average component)
+ CALL wzv ( kstp ) ! now cross-level velocity
+ ENDIF
+
+ CALL dyn_bfr ( kstp ) ! bottom friction
+ CALL dyn_zdf ( kstp ) ! vertical diffusion
+
+ !>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+ ! cool skin
+ !<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
+ IF ( ln_diurnal ) CALL stp_diurnal( kstp )
+
+ !>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+ ! diagnostics and outputs (ua, va, tsa used as workspace)
+ !<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
+ IF( lk_floats ) CALL flo_stp( kstp ) ! drifting Floats
+ IF( nn_diacfl == 1 ) CALL dia_cfl( kstp ) ! Courant number diagnostics
+ IF( lk_diahth ) CALL dia_hth( kstp ) ! Thermocline depth (20 degres isotherm depth)
+ IF( lk_diadct ) CALL dia_dct( kstp ) ! Transports
+ CALL dia_ar5( kstp ) ! ar5 diag
+ IF( lk_diaharm ) CALL dia_harm( kstp ) ! Tidal harmonic analysis
+ ! NB - new harmonic analysis
+ IF( lk_diaharm_fast ) &
+ & CALL dia_harm_fast( kstp ) ! Tidal harmonic analysis - restart and faster version
+ ! END NB
+ CALL dia_wri( kstp ) ! ocean model: outputs
+ !
+ IF( ln_crs ) CALL crs_fld ( kstp ) ! ocean model: online field coarsening & output
+
+#if defined key_top
+ !>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+ ! Passive Tracer Model
+ !<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
+ CALL trc_stp ( kstp ) ! time-stepping
+#endif
+
+ !>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+ ! Active tracers
+ !<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
+ tsa(:,:,:,:) = 0._wp ! set tracer trends to zero
+
+ IF( lk_asminc .AND. ln_asmiau .AND. &
+ & ln_trainc ) CALL tra_asm_inc ( kstp ) ! apply tracer assimilation increment
+ CALL tra_sbc ( kstp ) ! surface boundary condition
+ IF( ln_traqsr ) CALL tra_qsr ( kstp ) ! penetrative solar radiation qsr
+ IF( ln_trabbc ) CALL tra_bbc ( kstp ) ! bottom heat flux
+ IF( lk_trabbl ) CALL tra_bbl ( kstp ) ! advective (and/or diffusive) bottom boundary layer scheme
+ IF( ln_tradmp ) CALL tra_dmp ( kstp ) ! internal damping trends
+ IF( ln_bdy ) CALL bdy_tra_dmp ( kstp ) ! bdy damping trends
+#if defined key_agrif
+ IF(.NOT. Agrif_Root()) &
+ & CALL Agrif_Sponge_tra ! tracers sponge
+#endif
+ CALL tra_adv ( kstp ) ! horizontal & vertical advection
+ CALL tra_ldf ( kstp ) ! lateral mixing
+
+!!gm : why CALL to dia_ptr has been moved here??? (use trends info?)
+ IF( ln_diaptr ) CALL dia_ptr ! Poleward adv/ldf TRansports diagnostics
+!!gm
+ CALL tra_zdf ( kstp ) ! vertical mixing and after tracer fields
+ IF( ln_zdfnpc ) CALL tra_npc ( kstp ) ! update after fields by non-penetrative convection
+
+ !>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+ ! Set boundary conditions and Swap
+ !<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
+!!jc1: For agrif, it would be much better to finalize tracers/momentum here (e.g. bdy conditions) and move the swap
+!! (and time filtering) after Agrif update. Then restart would be done after and would contain updated fields.
+!! If so:
+!! (i) no need to call agrif update at initialization time
+!! (ii) no need to update "before" fields
+!!
+!! Apart from creating new tra_swp/dyn_swp routines, this however:
+!! (i) makes boundary conditions at initialization time computed from updated fields which is not the case between
+!! two restarts => restartability issue. One can circumvent this, maybe, by assuming "interface separation",
+!! e.g. a shift of the feedback interface inside child domain.
+!! (ii) requires that all restart outputs of updated variables by agrif (e.g. passive tracers/tke/barotropic arrays) are done at the same
+!! place.
+!!
+!!jc2: dynnxt must be the latest call. e3t_b are indeed updated in that routine
+ CALL tra_nxt ( kstp ) ! finalize (bcs) tracer fields at next time step and swap
+ CALL dyn_nxt ( kstp ) ! finalize (bcs) velocities at next time step and swap
+ CALL ssh_swp ( kstp ) ! swap of sea surface height
+ IF(.NOT.ln_linssh) CALL dom_vvl_sf_swp( kstp ) ! swap of vertical scale factors
+ !
+ IF( ln_diahsb ) CALL dia_hsb( kstp ) ! - ML - global conservation diagnostics
+
+!!gm : This does not only concern the dynamics ==>>> add a new title
+!!gm2: why ouput restart before AGRIF update?
+!!
+!!jc: That would be better, but see comment above
+!!
+ IF( lrst_oce ) CALL rst_write ( kstp ) ! write output ocean restart file
+ IF( ln_sto_eos ) CALL sto_rst_write( kstp ) ! write restart file for stochastic parameters
+
+#if defined key_agrif
+ !>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+ ! AGRIF
+ !<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
+ CALL Agrif_Integrate_ChildGrids( stp )
+
+ IF( Agrif_NbStepint() == 0 ) THEN ! AGRIF Update
+!!jc in fact update is useless at last time step, but do it for global diagnostics
+ CALL Agrif_Update_Tra() ! Update active tracers
+ CALL Agrif_Update_Dyn() ! Update momentum
+ ENDIF
+#endif
+ IF( ln_diaobs ) CALL dia_obs( kstp ) ! obs-minus-model (assimilation) diagnostics (call after dynamics update)
+
+ !>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+ ! Control
+ !<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
+ CALL stp_ctl ( kstp, indic )
+ IF( indic < 0 ) THEN
+ CALL ctl_stop( 'step: indic < 0' )
+ CALL dia_wri_state( 'output.abort', kstp )
+ ENDIF
+!#if defined key_harm_ana
+!--- NB Restart for the tidal harmonic analysis
+! IF( ln_harm_ana_store ) CALL harm_ana( kstp ) ! Harmonic analysis of tides
+!--- END NB -----------------------------------
+!# endif
+ IF( kstp == nit000 ) THEN
+ CALL iom_close( numror ) ! close input ocean restart file
+ IF(lwm) CALL FLUSH ( numond ) ! flush output namelist oce
+ IF(lwm.AND.numoni /= -1 ) &
+ & CALL FLUSH ( numoni ) ! flush output namelist ice (if exist)
+ ENDIF
+
+ !>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+ ! Coupled mode
+ !<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
+!!gm why lk_oasis and not lk_cpl ????
+ IF( lk_oasis ) CALL sbc_cpl_snd( kstp ) ! coupled mode : field exchanges
+ !
+#if defined key_iomput
+ IF( kstp == nitend .OR. indic < 0 ) THEN
+ CALL iom_context_finalize( cxios_context ) ! needed for XIOS+AGRIF
+ IF( ln_crs ) CALL iom_context_finalize( trim(cxios_context)//"_crs" ) !
+ ENDIF
+#endif
+ !
+ IF( nn_timing == 1 .AND. kstp == nit000 ) CALL timing_reset
+ !
+ END SUBROUTINE stp
+
+END MODULE step
diff --git a/MY_SRC/step_oce.F90 b/MY_SRC/step_oce.F90
new file mode 100755
index 0000000..d4e0cbc
--- /dev/null
+++ b/MY_SRC/step_oce.F90
@@ -0,0 +1,127 @@
+MODULE step_oce
+ !!======================================================================
+ !! *** MODULE step_oce ***
+ !! Ocean time-stepping : module used in both initialisation phase and time stepping
+ !!======================================================================
+ !! History : 3.3 ! 2010-08 (C. Ethe) Original code - reorganisation of the initial phase
+ !! 3.7 ! 2014-01 (G. Madec) LDF simplication
+ !!----------------------------------------------------------------------
+ USE oce ! ocean dynamics and tracers variables
+ USE dom_oce ! ocean space and time domain variables
+ USE zdf_oce ! ocean vertical physics variables
+
+ USE daymod ! calendar (day routine)
+
+ USE sbc_oce ! surface boundary condition: ocean
+ USE sbcmod ! surface boundary condition (sbc routine)
+ USE sbcrnf ! surface boundary condition: runoff variables
+ USE sbccpl ! surface boundary condition: coupled formulation (call send at end of step)
+ USE sbcapr ! surface boundary condition: atmospheric pressure
+ USE sbctide ! Tide initialisation
+ USE sbcwave ! Wave intialisation
+
+ USE traqsr ! solar radiation penetration (tra_qsr routine)
+ USE trasbc ! surface boundary condition (tra_sbc routine)
+ USE trabbc ! bottom boundary condition (tra_bbc routine)
+ USE trabbl ! bottom boundary layer (tra_bbl routine)
+ USE tradmp ! internal damping (tra_dmp routine)
+ USE traadv ! advection scheme control (tra_adv_ctl routine)
+ USE traldf ! lateral mixing (tra_ldf routine)
+ USE trazdf ! vertical mixing (tra_zdf routine)
+ USE tranxt ! time-stepping (tra_nxt routine)
+ USE tranpc ! non-penetrative convection (tra_npc routine)
+
+ USE eosbn2 ! equation of state (eos_bn2 routine)
+
+ USE divhor ! horizontal divergence (div_hor routine)
+ USE dynadv ! advection (dyn_adv routine)
+ USE dynbfr ! Bottom friction terms (dyn_bfr routine)
+ USE dynvor ! vorticity term (dyn_vor routine)
+ USE dynhpg ! hydrostatic pressure grad. (dyn_hpg routine)
+ USE dynldf ! lateral momentum diffusion (dyn_ldf routine)
+ USE dynzdf ! vertical diffusion (dyn_zdf routine)
+ USE dynspg ! surface pressure gradient (dyn_spg routine)
+
+ USE dynnxt ! time-stepping (dyn_nxt routine)
+
+ USE stopar ! Stochastic parametrization (sto_par routine)
+ USE stopts
+
+ USE bdy_oce , ONLY: ln_bdy
+ USE bdydta ! open boundary condition data (bdy_dta routine)
+ USE bdytra ! bdy cond. for tracers (bdy_tra routine)
+ USE bdydyn3d ! bdy cond. for baroclinic vel. (bdy_dyn3d routine)
+
+ USE sshwzv ! vertical velocity and ssh (ssh_nxt routine)
+ ! (ssh_swp routine)
+ ! (wzv routine)
+ USE domvvl ! variable vertical scale factors (dom_vvl_sf_nxt routine)
+ ! (dom_vvl_sf_swp routine)
+
+ USE ldfslp ! iso-neutral slopes (ldf_slp routine)
+ USE ldfdyn ! lateral eddy viscosity coef. (ldf_dyn routine)
+ USE ldftra ! lateral eddy diffusive coef. (ldf_tra routine)
+
+ USE zdftmx ! tide-induced vertical mixing (zdf_tmx routine)
+ USE zdfbfr ! bottom friction (zdf_bfr routine)
+ USE zdftke ! TKE vertical mixing (zdf_tke routine)
+ USE zdfgls ! GLS vertical mixing (zdf_gls routine)
+ USE zdfddm ! double diffusion mixing (zdf_ddm routine)
+ USE zdfevd ! enhanced vertical diffusion (zdf_evd routine)
+ USE zdfric ! Richardson vertical mixing (zdf_ric routine)
+ USE zdfmxl ! Mixed-layer depth (zdf_mxl routine)
+ USE zdfqiao !Qiao module wave induced mixing (zdf_qiao routine)
+
+ USE step_diu ! Time stepping for diurnal sst
+ USE diurnal_bulk ! diurnal SST bulk routines (diurnal_sst_takaya routine)
+ USE cool_skin ! diurnal cool skin correction (diurnal_sst_coolskin routine)
+ USE sbc_oce ! surface fluxes
+
+ USE zpshde ! partial step: hor. derivative (zps_hde routine)
+
+ USE diawri ! Standard run outputs (dia_wri routine)
+ USE diaptr ! poleward transports (dia_ptr routine)
+ USE diadct ! sections transports (dia_dct routine)
+ USE diaar5 ! AR5 diagnosics (dia_ar5 routine)
+ USE diahth ! thermocline depth (dia_hth routine)
+ USE diahsb ! heat, salt and volume budgets (dia_hsb routine)
+ USE diaharm
+!--- NB for restart hamonic analysis
+ USE diaharm_fast ! harmonic analysis of tides (harm_ana routine)
+!--- END NB -----------------------------------
+ USE diacfl
+ USE flo_oce ! floats variables
+ USE floats ! floats computation (flo_stp routine)
+
+ USE crsfld ! Standard output on coarse grid (crs_fld routine)
+
+ USE asminc ! assimilation increments (tra_asm_inc routine)
+ ! (dyn_asm_inc routine)
+ USE asmbkg
+ USE stpctl ! time stepping control (stp_ctl routine)
+ USE restart ! ocean restart (rst_wri routine)
+ USE prtctl ! Print control (prt_ctl routine)
+
+ USE diaobs ! Observation operator
+
+ USE in_out_manager ! I/O manager
+ USE iom !
+ USE lbclnk
+ USE timing ! Timing
+
+#if defined key_iomput
+ USE xios
+#endif
+#if defined key_agrif
+ USE agrif_opa_sponge ! Momemtum and tracers sponges
+ USE agrif_opa_update ! Update (2-way nesting)
+#endif
+#if defined key_top
+ USE trcstp ! passive tracer time-stepping (trc_stp routine)
+#endif
+ !!----------------------------------------------------------------------
+ !! NEMO/OPA 3.7 , NEMO Consortium (2014)
+ !! $Id: step_oce.F90 7646 2017-02-06 09:25:03Z timgraham $
+ !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
+ !!======================================================================
+END MODULE step_oce
diff --git a/MY_SRC/tide_FES14.h90 b/MY_SRC/tide_FES14.h90
new file mode 100755
index 0000000..3998e80
--- /dev/null
+++ b/MY_SRC/tide_FES14.h90
@@ -0,0 +1,114 @@
+ !!----------------------------------------------------------------------
+ !! History : 3.2 ! 2007 (O. Le Galloudec) Original code
+ !!----------------------------------------------------------------------
+ !! TIDES ADDED ! 2017 (Nico Bruneau)
+ !! Following this document that seems to match implemented code
+ !! https://docs.lib.noaa.gov/rescue/cgs_specpubs/QB275U35no981924.pdf
+ !! see page 189 for some proposed values
+ !!
+ !! The convention which seems to have been chosen is the Shureman one and
+ !! not the Cartwright and Tayer (1971)
+ !! This is probably due to the fact the Schureman has a solar calendar
+ !! while Cartwright and Tayer is based on a lunar calendar
+ !!
+ !! Therefore the coefficient are not the Doodson number but the one
+ !! defined by Schureman. For example :
+ !! M2 : Doodson : 2 0 0 0 0 0
+ !! Schureman : 2 -2 2 0 0 0
+ !!
+ !! Components 1-34 are for FES 2014
+ !! Components >= 35 are the one that were initially present in NEMO and not in FES14
+ !! keep in mind than equitide coefficient have been ajusted for the
+ !! 34 FES 2014 constituents
+ !!
+ !! The different coefficient are as follows
+ !! - nt = T = Number of Julian centuries (36625 days) from Greenwich mean noon on December 31, 1899.
+ !! = Hour angle of mean sun
+ !! - ns = s = mean longitude of the moon
+ !! - nh = h = mean longitude of the sun
+ !! - np = p = mean longitude of the lunar perigee
+ !! - np1 = p1 = mean longitude of the solar perigee
+ !! - shift appears in table as a bias in degree
+ !! - nksi Coefficient for the longitude in moon's orbit of lunar intersection
+ !! - nu0 Coefficient for the right ascension of lunar intersection
+ !! - nu1 Coefficient for the term in argument of lunisolar constituent K1
+ !! - nu2 Coefficient for the term in argument of lunisolar constituent K2
+ !! - R = ???
+ !! - Formula = Nodal factor function; see the table of Schureman. Implemented in tide_mod.F90
+ !!
+ !! The equitide parameter seems to be the equilibrium tide amplitude corrected
+ !! with the C_n^m coefficient: see Cartwright and Tayer (1971) equation 12
+ !! and Table 2
+ !! As an example in their Table 4c (p66), M2 (200000) has an amplitude of
+ !! around 0.63186 m
+ !! Table 2, give us a correction of m = 2, n = 2 (semi-diurnal)
+ !! 0.63186*3*sqrt( 5 / 96 / pi ) = 0.24407
+ !! very close to the one define originally here : 0.242297
+ !! Third order terms are neglected
+ !!
+ !! So to correct (to match what is implemented in sbctide.F90 - take care CT71 uses co-latitude):
+ !! - long wave : Amplitude from CT71 * [ -1 * sqrt( 5 / 4 / pi ) ]
+ !! - diurnal : Amplitude from CT71 * [ -3/2 * sqrt( 5 / 24 / pi ) ]
+ !! - semi-diur : Amplitude from CT71 * [ 3 * sqrt( 5 / 96 / pi ) ]
+ !!
+ !! ATTENTION: convention seems to be to have a positive coefficient and a 180 shift to
+ !! represent negative value. to be confirmed though.
+ !!
+ !! All equtide were computed using the last epocs from Cartwright and Tayer (1971) multiply by
+ !! the corresponding coefficient of their table 2
+ !!
+ !! nutide is used to compute tide potential - it uses a different formulation depending of nutide
+ !! see sbctide.F90 in function tide_init_potential
+ !!
+ !! Some random note
+ !! in cnes fes tool:
+ !! Msf has nksi = 2 and nnu0 = -2 which is reverse from Schureman (I kept the Schureman one)
+ !!
+ !!----------------------------------------------------------------------
+ !
+ ! !! name_tide , equitide , nutide , nt , ns , nh , np , np1 , shift , nksi , nnu0 , nnu1 , nnu2 , R , formula !!
+ ! !! ! ! ! ! ! ! ! ! ! ! ! ! ! ! !!
+ !
+ ! Long Period Tides
+ Wave( 1) = tide( 'SA' , 0.003103 , 0 , 0 , 0 , 1 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 )
+ Wave( 2) = tide( 'SSA' , 0.019523 , 0 , 0 , 0 , 2 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 )
+ Wave( 3) = tide( 'MM' , 0.022191 , 0 , 0 , 1 , 0 , -1 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 73 )
+ Wave( 4) = tide( 'MF' , 0.042023 , 0 , 0 , 2 , 0 , 0 , 0 , 0 , -2 , 0 , 0 , 0 , 0 , 74 )
+ Wave( 5) = tide( 'MTM' , 0.008042 , 0 , 0 , 3 , 0 , -1 , 0 , 0 , -2 , 0 , 0 , 0 , 0 , 74 )
+ Wave( 6) = tide( 'MSF' , 0.003671 , 0 , 0 , 2 , -2 , 0 , 0 , 0 , -2 , 2 , 0 , 0 , 0 , 78 )
+ Wave( 7) = tide( 'MSQM' , 0.001293 , 0 , 0 , 4 , -2 , 0 , 0 , 0 , -2 , 0 , 0 , 0 , 0 , 74 )
+ !
+ ! Diurnal Tides
+ Wave( 8) = tide( 'K1' ,-0.142442 , 1 , 1 , 0 , 1 , 0 , 0 , -90 , 0 , 0 , -1 , 0 , 0 , 227 )
+ Wave( 9) = tide( 'O1' , 0.101277 , 1 , 1 , -2 , 1 , 0 , 0 , +90 , 2 , -1 , 0 , 0 , 0 , 75 )
+ Wave(10) = tide( 'Q1' , 0.019383 , 1 , 1 , -3 , 1 , 1 , 0 , +90 , 2 , -1 , 0 , 0 , 0 , 75 )
+ Wave(11) = tide( 'P1' , 0.047145 , 1 , 1 , 0 , -1 , 0 , 0 , +90 , 0 , 0 , 0 , 0 , 0 , 0 )
+ Wave(12) = tide( 'S1' ,-0.001116 , 1 , 1 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 )
+ Wave(13) = tide( 'J1' ,-0.007961 , 1 , 1 , 1 , 1 , -1 , 0 , -90 , 0 , -1 , 0 , 0 , 0 , 76 )
+ !
+ ! Semi-Diurnal Tides
+ Wave(14) = tide( 'M2' , 0.244083 , 2 , 2 , -2 , 2 , 0 , 0 , 0 , 2 , -2 , 0 , 0 , 0 , 78 )
+ Wave(15) = tide( 'N2' , 0.046720 , 2 , 2 , -3 , 2 , 1 , 0 , 0 , 2 , -2 , 0 , 0 , 0 , 78 )
+ Wave(16) = tide( 'S2' , 0.113565 , 2 , 2 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 )
+ Wave(17) = tide( 'K2' , 0.030875 , 2 , 2 , 0 , 2 , 0 , 0 , 0 , 0 , 0 , 0 , -2 , 0 , 235 )
+ Wave(18) = tide( 'L2' , 0.006903 , 2 , 2 , -1 , 2 , -1 , 0 , +180 , 2 , -2 , 0 , 0 , 0 , 215 )
+ Wave(19) = tide( 'T2' , 0.006644 , 2 , 2 , 0 , -1 , 0 , 1 , 0 , 0 , 0 , 0 , 0 , 0 , 0 )
+ Wave(20) = tide( 'R2' , 0.000950 , 2 , 2 , 0 , 1 , 0 , -1 , +180 , 2 , 0 , 0 , 0 , 0 , 0 )
+ !
+ Wave(21) = tide( 'MU2' , 0.007451 , 2 , 2 , -4 , 4 , 0 , 0 , 0 , 2 , -2 , 0 , 0 , 0 , 78 )
+ Wave(22) = tide( 'NU2' , 0.008873 , 2 , 2 , -3 , 4 , -1 , 0 , 0 , 2 , -2 , 0 , 0 , 0 , 78 )
+ Wave(23) = tide( '2N2' , 0.006176 , 2 , 2 , -4 , 2 , 2 , 0 , 0 , 2 , -2 , 0 , 0 , 0 , 78 )
+ Wave(24) = tide( 'MKS2' , 0.000000 , 2 , 2 , -2 , 4 , 0 , 0 , 0 , 2 , -2 , 0 , -2 , 0 , 4 )
+ Wave(25) = tide( 'LA2' , 0.001800 , 2 , 2 , -1 , 0 , 1 , 0 , +180 , 2 , -2 , 0 , 0 , 0 , 78 )
+ Wave(26) = tide( 'EPS2' , 0.001796 , 2 , 2 , -5 , 4 , 1 , 0 , 0 , 2 , -2 , 0 , 0 , 0 , 78 )
+ !
+ ! Harmonic and others
+ Wave(27) = tide( 'M3' , 0.000000 , 3 , 3 , -3 , 3 , 0 , 0 , 0 , 3 , -3 , 0 , 0 , 0 , 149 )
+ Wave(28) = tide( 'M4' , 0.000000 , 4 , 4 , -4 , 4 , 0 , 0 , 0 , 4 , -4 , 0 , 0 , 0 , 1 )
+ Wave(29) = tide( 'M6' , 0.000000 , 6 , 6 , -6 , 6 , 0 , 0 , 0 , 6 , -6 , 0 , 0 , 0 , 18 )
+ Wave(30) = tide( 'M8' , 0.000000 , 8 , 8 , -8 , 8 , 0 , 0 , 0 , 8 , -8 , 0 , 0 , 0 , 20 )
+ Wave(31) = tide( 'N4' , 0.000000 , 4 , 4 , -6 , 4 , 2 , 0 , 0 , 4 , -4 , 0 , 0 , 0 , 1 )
+ Wave(32) = tide( 'S4' , 0.000000 , 4 , 4 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 )
+ Wave(33) = tide( 'MN4' , 0.000000 , 4 , 4 , -5 , 4 , 1 , 0 , 0 , 4 , -4 , 0 , 0 , 0 , 1 )
+ Wave(34) = tide( 'MS4' , 0.000000 , 4 , 4 , -2 , 2 , 0 , 0 , 0 , 2 , -2 , 0 , 0 , 0 , 78 )
+ !
diff --git a/MY_SRC/tide_mod.F90 b/MY_SRC/tide_mod.F90
new file mode 100755
index 0000000..d14af9b
--- /dev/null
+++ b/MY_SRC/tide_mod.F90
@@ -0,0 +1,430 @@
+MODULE tide_mod
+ !!======================================================================
+ !! *** MODULE tide_mod ***
+ !! Compute nodal modulations corrections and pulsations
+ !!======================================================================
+ !! History : 1.0 ! 2007 (O. Le Galloudec) Original code
+ !!----------------------------------------------------------------------
+ USE dom_oce ! ocean space and time domain
+ USE phycst ! physical constant
+ USE daymod ! calendar
+
+ IMPLICIT NONE
+ PRIVATE
+
+ PUBLIC tide_harmo ! called by tideini and diaharm modules
+ PUBLIC tide_init_Wave ! called by tideini and diaharm modules
+
+!--- NB - extend number of constituents for tide
+# if defined key_FES14_tides
+ INTEGER, PUBLIC, PARAMETER :: jpmax_harmo = 34 !: maximum number of harmonic
+# else
+ INTEGER, PUBLIC, PARAMETER :: jpmax_harmo = 19 !: maximum number of harmonic
+# endif
+!--- END NB
+
+
+ TYPE, PUBLIC :: tide
+ CHARACTER(LEN=4) :: cname_tide
+ REAL(wp) :: equitide
+ INTEGER :: nutide
+ INTEGER :: nt, ns, nh, np, np1, shift
+ INTEGER :: nksi, nnu0, nnu1, nnu2, R
+ INTEGER :: nformula
+ END TYPE tide
+
+ TYPE(tide), PUBLIC, DIMENSION(jpmax_harmo) :: Wave !:
+
+ REAL(wp) :: sh_T, sh_s, sh_h, sh_p, sh_p1 ! astronomic angles
+ REAL(wp) :: sh_xi, sh_nu, sh_nuprim, sh_nusec, sh_R !
+ REAL(wp) :: sh_I, sh_x1ra, sh_N !
+
+ !!----------------------------------------------------------------------
+ !! NEMO/OPA 3.3 , LOCEAN-IPSL (2010)
+ !! $Id: tide_mod.F90 5215 2015-04-15 16:11:56Z nicolasmartin $
+ !! Software governed by the CeCILL licence (modipsl/doc/NEMO_CeCILL.txt)
+ !!----------------------------------------------------------------------
+CONTAINS
+
+ SUBROUTINE tide_init_Wave
+!! NB
+# if defined key_FES14_tides
+# include "tide_FES14.h90"
+# else
+!! END NB
+# include "tide.h90"
+# endif
+ END SUBROUTINE tide_init_Wave
+
+
+ SUBROUTINE tide_harmo( pomega, pvt, put , pcor, ktide ,kc)
+ !!----------------------------------------------------------------------
+ !!----------------------------------------------------------------------
+ INTEGER , DIMENSION(kc), INTENT(in ) :: ktide ! Indice of tidal constituents
+ INTEGER , INTENT(in ) :: kc ! Total number of tidal constituents
+ REAL(wp), DIMENSION(kc), INTENT(out) :: pomega ! pulsation in radians/s
+ REAL(wp), DIMENSION(kc), INTENT(out) :: pvt, put, pcor !
+ !!----------------------------------------------------------------------
+ !
+ CALL astronomic_angle
+ CALL tide_pulse( pomega, ktide ,kc )
+ CALL tide_vuf ( pvt, put, pcor, ktide ,kc )
+ !
+ END SUBROUTINE tide_harmo
+
+
+ SUBROUTINE astronomic_angle
+ !!----------------------------------------------------------------------
+ !! tj is time elapsed since 1st January 1900, 0 hour, counted in julian
+ !! century (e.g. time in days divide by 36525)
+ !!----------------------------------------------------------------------
+ REAL(wp) :: cosI, p, q, t2, t4, sin2I, s2, tgI2, P1, sh_tgn2, at1, at2
+ REAL(wp) :: zqy , zsy, zday, zdj, zhfrac
+ !!----------------------------------------------------------------------
+ !
+ zqy = AINT( (nyear-1901.)/4. )
+ zsy = nyear - 1900.
+ !
+ zdj = dayjul( nyear, nmonth, nday )
+ zday = zdj + zqy - 1.
+ !
+ zhfrac = nsec_day / 3600.
+ !
+ !----------------------------------------------------------------------
+ ! Sh_n Longitude of ascending lunar node
+ !----------------------------------------------------------------------
+ sh_N=(259.1560564-19.328185764*zsy-.0529539336*zday-.0022064139*zhfrac)*rad
+ !----------------------------------------------------------------------
+ ! T mean solar angle (Greenwhich time)
+ !----------------------------------------------------------------------
+ sh_T=(180.+zhfrac*(360./24.))*rad
+ !----------------------------------------------------------------------
+ ! h mean solar Longitude
+ !----------------------------------------------------------------------
+ sh_h=(280.1895014-.238724988*zsy+.9856473288*zday+.0410686387*zhfrac)*rad
+ !----------------------------------------------------------------------
+ ! s mean lunar Longitude
+ !----------------------------------------------------------------------
+ sh_s=(277.0256206+129.38482032*zsy+13.176396768*zday+.549016532*zhfrac)*rad
+ !----------------------------------------------------------------------
+ ! p1 Longitude of solar perigee
+ !----------------------------------------------------------------------
+ sh_p1=(281.2208569+.01717836*zsy+.000047064*zday+.000001961*zhfrac)*rad
+ !----------------------------------------------------------------------
+ ! p Longitude of lunar perigee
+ !----------------------------------------------------------------------
+ sh_p=(334.3837214+40.66246584*zsy+.111404016*zday+.004641834*zhfrac)*rad
+
+ sh_N = MOD( sh_N ,2*rpi )
+ sh_s = MOD( sh_s ,2*rpi )
+ sh_h = MOD( sh_h, 2*rpi )
+ sh_p = MOD( sh_p, 2*rpi )
+ sh_p1= MOD( sh_p1,2*rpi )
+
+ cosI = 0.913694997 -0.035692561 *cos(sh_N)
+
+ sh_I = ACOS( cosI )
+
+ sin2I = sin(sh_I)
+ sh_tgn2 = tan(sh_N/2.0)
+
+ at1=atan(1.01883*sh_tgn2)
+ at2=atan(0.64412*sh_tgn2)
+
+ sh_xi=-at1-at2+sh_N
+
+ IF( sh_N > rpi ) sh_xi=sh_xi-2.0*rpi
+
+ sh_nu = at1 - at2
+
+ !----------------------------------------------------------------------
+ ! For constituents l2 k1 k2
+ !----------------------------------------------------------------------
+
+ tgI2 = tan(sh_I/2.0)
+ P1 = sh_p-sh_xi
+
+ t2 = tgI2*tgI2
+ t4 = t2*t2
+ sh_x1ra = sqrt( 1.0-12.0*t2*cos(2.0*P1)+36.0*t4 )
+
+ p = sin(2.0*P1)
+ q = 1.0/(6.0*t2)-cos(2.0*P1)
+ sh_R = atan(p/q)
+
+ p = sin(2.0*sh_I)*sin(sh_nu)
+ q = sin(2.0*sh_I)*cos(sh_nu)+0.3347
+ sh_nuprim = atan(p/q)
+
+ s2 = sin(sh_I)*sin(sh_I)
+ p = s2*sin(2.0*sh_nu)
+ q = s2*cos(2.0*sh_nu)+0.0727
+ sh_nusec = 0.5*atan(p/q)
+ !
+ END SUBROUTINE astronomic_angle
+
+
+ SUBROUTINE tide_pulse( pomega, ktide ,kc )
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE tide_pulse ***
+ !!
+ !! ** Purpose : Compute tidal frequencies
+ !!----------------------------------------------------------------------
+ INTEGER , INTENT(in ) :: kc ! Total number of tidal constituents
+ INTEGER , DIMENSION(kc), INTENT(in ) :: ktide ! Indice of tidal constituents
+ REAL(wp), DIMENSION(kc), INTENT(out) :: pomega ! pulsation in radians/s
+ !
+ INTEGER :: jh
+ REAL(wp) :: zscale
+ REAL(wp) :: zomega_T = 13149000.0_wp
+ REAL(wp) :: zomega_s = 481267.892_wp
+ REAL(wp) :: zomega_h = 36000.76892_wp
+ REAL(wp) :: zomega_p = 4069.0322056_wp
+ REAL(wp) :: zomega_n = 1934.1423972_wp
+ REAL(wp) :: zomega_p1= 1.719175_wp
+ !!----------------------------------------------------------------------
+ !
+ zscale = rad / ( 36525._wp * 86400._wp )
+ !
+ DO jh = 1, kc
+ pomega(jh) = ( zomega_T * Wave( ktide(jh) )%nT &
+ & + zomega_s * Wave( ktide(jh) )%ns &
+ & + zomega_h * Wave( ktide(jh) )%nh &
+ & + zomega_p * Wave( ktide(jh) )%np &
+ & + zomega_p1* Wave( ktide(jh) )%np1 ) * zscale
+ END DO
+ !
+ END SUBROUTINE tide_pulse
+
+
+ SUBROUTINE tide_vuf( pvt, put, pcor, ktide ,kc )
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE tide_vuf ***
+ !!
+ !! ** Purpose : Compute nodal modulation corrections
+ !!
+ !! ** Outputs : vt: Phase of tidal potential relative to Greenwich (radians)
+ !! ut: Phase correction u due to nodal motion (radians)
+ !! ft: Nodal correction factor
+ !!----------------------------------------------------------------------
+ INTEGER , INTENT(in ) :: kc ! Total number of tidal constituents
+ INTEGER , DIMENSION(kc), INTENT(in ) :: ktide ! Indice of tidal constituents
+ REAL(wp), DIMENSION(kc), INTENT(out) :: pvt, put, pcor !
+ !
+ INTEGER :: jh ! dummy loop index
+ !!----------------------------------------------------------------------
+ !
+ DO jh = 1, kc
+ ! Phase of the tidal potential relative to the Greenwhich
+ ! meridian (e.g. the position of the fictuous celestial body). Units are radian:
+ pvt(jh) = sh_T * Wave( ktide(jh) )%nT &
+ & + sh_s * Wave( ktide(jh) )%ns &
+ & + sh_h * Wave( ktide(jh) )%nh &
+ & + sh_p * Wave( ktide(jh) )%np &
+ & + sh_p1* Wave( ktide(jh) )%np1 &
+ & + Wave( ktide(jh) )%shift * rad
+ !
+ ! Phase correction u due to nodal motion. Units are radian:
+ put(jh) = sh_xi * Wave( ktide(jh) )%nksi &
+ & + sh_nu * Wave( ktide(jh) )%nnu0 &
+ & + sh_nuprim * Wave( ktide(jh) )%nnu1 &
+ & + sh_nusec * Wave( ktide(jh) )%nnu2 &
+ & + sh_R * Wave( ktide(jh) )%R
+
+ ! Nodal correction factor:
+ pcor(jh) = nodal_factort( Wave( ktide(jh) )%nformula )
+ END DO
+ !
+ END SUBROUTINE tide_vuf
+
+
+ RECURSIVE FUNCTION nodal_factort( kformula ) RESULT( zf )
+ !!----------------------------------------------------------------------
+ !!----------------------------------------------------------------------
+ INTEGER, INTENT(in) :: kformula
+ !
+ REAL(wp) :: zf
+ REAL(wp) :: zs, zf1, zf2
+ !!----------------------------------------------------------------------
+ !
+ SELECT CASE( kformula )
+ !
+ CASE( 0 ) !== formule 0, solar waves
+ zf = 1.0
+ !
+ CASE( 1 ) !== formule 1, compound waves (78 x 78)
+ zf=nodal_factort(78)
+ zf = zf * zf
+ !
+ CASE ( 2 ) !== formule 2, compound waves (78 x 0) === (78)
+ zf1= nodal_factort(78)
+ zf = nodal_factort( 0)
+ zf = zf1 * zf
+ !
+ CASE ( 4 ) !== formule 4, compound waves (78 x 235)
+ zf1 = nodal_factort( 78)
+ zf = nodal_factort(235)
+ zf = zf1 * zf
+ !
+ CASE ( 5 ) !== formule 5, compound waves (78 *78 x 235)
+ zf1 = nodal_factort( 78)
+ zf = nodal_factort(235)
+ zf = zf * zf1 * zf1
+ !
+ CASE ( 6 ) !== formule 6, compound waves (78 *78 x 0)
+ zf1 = nodal_factort(78)
+ zf = nodal_factort( 0)
+ zf = zf * zf1 * zf1
+ !
+ CASE( 7 ) !== formule 7, compound waves (75 x 75)
+ zf = nodal_factort(75)
+ zf = zf * zf
+ !
+ CASE( 8 ) !== formule 8, compound waves (78 x 0 x 235)
+ zf = nodal_factort( 78)
+ zf1 = nodal_factort( 0)
+ zf2 = nodal_factort(235)
+ zf = zf * zf1 * zf2
+ !
+ CASE( 9 ) !== formule 9, compound waves (78 x 0 x 227)
+ zf = nodal_factort( 78)
+ zf1 = nodal_factort( 0)
+ zf2 = nodal_factort(227)
+ zf = zf * zf1 * zf2
+ !
+ CASE( 10 ) !== formule 10, compound waves (78 x 227)
+ zf = nodal_factort( 78)
+ zf1 = nodal_factort(227)
+ zf = zf * zf1
+ !
+ CASE( 11 ) !== formule 11, compound waves (75 x 0)
+!!gm bug???? zf 2 fois !
+ zf = nodal_factort(75)
+ zf = nodal_factort( 0)
+ zf = zf * zf1
+ !
+ CASE( 12 ) !== formule 12, compound waves (78 x 78 x 78 x 0)
+ zf1 = nodal_factort(78)
+ zf = nodal_factort( 0)
+ zf = zf * zf1 * zf1 * zf1
+ !
+ CASE( 13 ) !== formule 13, compound waves (78 x 75)
+ zf1 = nodal_factort(78)
+ zf = nodal_factort(75)
+ zf = zf * zf1
+ !
+ CASE( 14 ) !== formule 14, compound waves (235 x 0) === (235)
+ zf = nodal_factort(235)
+ zf1 = nodal_factort( 0)
+ zf = zf * zf1
+ !
+ CASE( 15 ) !== formule 15, compound waves (235 x 75)
+ zf = nodal_factort(235)
+ zf1 = nodal_factort( 75)
+ zf = zf * zf1
+ !
+ CASE( 16 ) !== formule 16, compound waves (78 x 0 x 0) === (78)
+ zf = nodal_factort(78)
+ zf1 = nodal_factort( 0)
+ zf = zf * zf1 * zf1
+ !
+ CASE( 17 ) !== formule 17, compound waves (227 x 0)
+ zf1 = nodal_factort(227)
+ zf = nodal_factort( 0)
+ zf = zf * zf1
+ !
+ CASE( 18 ) !== formule 18, compound waves (78 x 78 x 78 )
+ zf1 = nodal_factort(78)
+ zf = zf1 * zf1 * zf1
+ !
+ CASE( 19 ) !== formule 19, compound waves (78 x 0 x 0 x 0) === (78)
+!!gm bug2 ==>>> here identical to formule 16, a third multiplication by zf1 is missing
+ zf = nodal_factort(78)
+ zf1 = nodal_factort( 0)
+ zf = zf * zf1 * zf1
+ !
+!--- NB 11/2017
+ CASE( 20 ) !== formule 20, compound waves ( 78 x 78 x 78 x 78 )
+ zf1 = nodal_factort(78)
+ zf = zf1 * zf1 * zf1 * zf1
+!--- END NB
+!
+ CASE( 73 ) !== formule 73
+ zs = sin(sh_I)
+ zf = (2./3.-zs*zs)/0.5021
+ !
+ CASE( 74 ) !== formule 74
+ zs = sin(sh_I)
+ zf = zs * zs / 0.1578
+ !
+ CASE( 75 ) !== formule 75
+ zs = cos(sh_I/2)
+ zf = sin(sh_I) * zs * zs / 0.3800
+ !
+ CASE( 76 ) !== formule 76
+ zf = sin(2*sh_I) / 0.7214
+ !
+ CASE( 77 ) !== formule 77
+ zs = sin(sh_I/2)
+ zf = sin(sh_I) * zs * zs / 0.0164
+ !
+ CASE( 78 ) !== formule 78
+ zs = cos(sh_I/2)
+ zf = zs * zs * zs * zs / 0.9154
+ !
+ CASE( 79 ) !== formule 79
+ zs = sin(sh_I)
+ zf = zs * zs / 0.1565
+ !
+ CASE( 144 ) !== formule 144
+ zs = sin(sh_I/2)
+ zf = ( 1-10*zs*zs+15*zs*zs*zs*zs ) * cos(sh_I/2) / 0.5873
+ !
+ CASE( 149 ) !== formule 149
+ zs = cos(sh_I/2)
+ zf = zs*zs*zs*zs*zs*zs / 0.8758
+ !
+ CASE( 215 ) !== formule 215
+ zs = cos(sh_I/2)
+ zf = zs*zs*zs*zs / 0.9154 * sh_x1ra
+ !
+ CASE( 227 ) !== formule 227
+ zs = sin(2*sh_I)
+ zf = sqrt( 0.8965*zs*zs+0.6001*zs*cos (sh_nu)+0.1006 )
+ !
+ CASE ( 235 ) !== formule 235
+ zs = sin(sh_I)
+ zf = sqrt( 19.0444*zs*zs*zs*zs + 2.7702*zs*zs*cos(2*sh_nu) + .0981 )
+ !
+ END SELECT
+ !
+ END FUNCTION nodal_factort
+
+
+ FUNCTION dayjul( kyr, kmonth, kday )
+ !!----------------------------------------------------------------------
+ !! *** THIS ROUTINE COMPUTES THE JULIAN DAY (AS A REAL VARIABLE)
+ !!----------------------------------------------------------------------
+ INTEGER,INTENT(in) :: kyr, kmonth, kday
+ !
+ INTEGER,DIMENSION(12) :: idayt, idays
+ INTEGER :: inc, ji
+ REAL(wp) :: dayjul, zyq
+ !
+ DATA idayt/0.,31.,59.,90.,120.,151.,181.,212.,243.,273.,304.,334./
+ !!----------------------------------------------------------------------
+ !
+ idays(1) = 0.
+ idays(2) = 31.
+ inc = 0.
+ zyq = MOD( kyr-1900. , 4. )
+ IF( zyq == 0.) inc = 1.
+ DO ji = 3, 12
+ idays(ji)=idayt(ji)+inc
+ END DO
+ dayjul = idays(kmonth) + kday
+ !
+ END FUNCTION dayjul
+
+ !!======================================================================
+END MODULE tide_mod
diff --git a/MY_SRC/tideini.F90 b/MY_SRC/tideini.F90
new file mode 100755
index 0000000..7094de8
--- /dev/null
+++ b/MY_SRC/tideini.F90
@@ -0,0 +1,125 @@
+MODULE tideini
+ !!======================================================================
+ !! *** MODULE tideini ***
+ !! Initialization of tidal forcing
+ !!======================================================================
+ !! History : 1.0 ! 2007 (O. Le Galloudec) Original code
+ !!----------------------------------------------------------------------
+ USE oce ! ocean dynamics and tracers variables
+ USE dom_oce ! ocean space and time domain
+ USE phycst ! physical constant
+ USE daymod ! calandar
+ USE tide_mod !
+ !
+ USE in_out_manager ! I/O units
+ USE iom ! xIOs server
+ USE ioipsl ! NetCDF IPSL library
+ USE lbclnk ! ocean lateral boundary conditions (or mpp link)
+
+ IMPLICIT NONE
+ PUBLIC
+
+ REAL(wp), PUBLIC, ALLOCATABLE, DIMENSION(:) :: omega_tide !:
+ REAL(wp), PUBLIC, ALLOCATABLE, DIMENSION(:) :: v0tide !:
+ REAL(wp), PUBLIC, ALLOCATABLE, DIMENSION(:) :: utide !:
+ REAL(wp), PUBLIC, ALLOCATABLE, DIMENSION(:) :: ftide !:
+
+ LOGICAL , PUBLIC :: ln_tide !:
+ LOGICAL , PUBLIC :: ln_tide_pot !:
+ LOGICAL , PUBLIC :: ln_tide_ramp !:
+ INTEGER , PUBLIC :: nb_harmo !:
+ INTEGER , PUBLIC :: kt_tide !:
+ REAL(wp), PUBLIC :: rdttideramp !:
+ ! NB - read love number from namelist
+ REAL(wp), PUBLIC :: dn_love_number !:
+ ! END NB
+ INTEGER , PUBLIC, ALLOCATABLE, DIMENSION(:) :: ntide !:
+
+ !!----------------------------------------------------------------------
+ !! NEMO/OPA 3.5 , NEMO Consortium (2013)
+ !! $Id: tideini.F90 7646 2017-02-06 09:25:03Z timgraham $
+ !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
+ !!----------------------------------------------------------------------
+CONTAINS
+
+ SUBROUTINE tide_init
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE tide_init ***
+ !!----------------------------------------------------------------------
+ INTEGER :: ji, jk
+ CHARACTER(LEN=4), DIMENSION(jpmax_harmo) :: clname
+ INTEGER :: ios ! Local integer output status for namelist read
+ !
+ ! NB - read love number from namelist
+ !NAMELIST/nam_tide/ln_tide, ln_tide_pot, ln_tide_ramp, rdttideramp, clname
+ NAMELIST/nam_tide/ln_tide, ln_tide_pot, ln_tide_ramp, rdttideramp, dn_love_number, clname
+ ! END NB
+ !!----------------------------------------------------------------------
+ !
+ ! Read Namelist nam_tide
+ REWIND( numnam_ref ) ! Namelist nam_tide in reference namelist : Tides
+ READ ( numnam_ref, nam_tide, IOSTAT = ios, ERR = 901)
+901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nam_tide in reference namelist', lwp )
+ !
+ REWIND( numnam_cfg ) ! Namelist nam_tide in configuration namelist : Tides
+ READ ( numnam_cfg, nam_tide, IOSTAT = ios, ERR = 902 )
+902 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nam_tide in configuration namelist', lwp )
+ IF(lwm) WRITE ( numond, nam_tide )
+ !
+ IF (ln_tide) THEN
+ IF (lwp) THEN
+ WRITE(numout,*)
+ WRITE(numout,*) 'tide_init : Initialization of the tidal components'
+ WRITE(numout,*) '~~~~~~~~~ '
+ WRITE(numout,*) ' Namelist nam_tide'
+ WRITE(numout,*) ' Use tidal components : ln_tide = ', ln_tide
+ WRITE(numout,*) ' Apply astronomical potential : ln_tide_pot = ', ln_tide_pot
+! WRITE(numout,*) ' nb_harmo = ', nb_harmo
+ WRITE(numout,*) ' ln_tide_ramp = ', ln_tide_ramp
+! NB - Love number
+ WRITE(numout,*) ' dn_love_number = ', dn_love_number
+! End NB
+ ENDIF
+ ELSE
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) 'tide_init : tidal components not used (ln_tide = F)'
+ IF(lwp) WRITE(numout,*) '~~~~~~~~~ '
+ RETURN
+ ENDIF
+ !
+ CALL tide_init_Wave
+ !
+ nb_harmo=0
+ DO jk = 1, jpmax_harmo
+ DO ji = 1,jpmax_harmo
+ IF( TRIM(clname(jk)) == Wave(ji)%cname_tide ) nb_harmo = nb_harmo + 1
+ END DO
+ END DO
+ IF (ln_tide .and.lwp) WRITE(numout,*) ' nb_harmo = ', nb_harmo
+
+ ! Ensure that tidal components have been set in namelist_cfg
+ IF( nb_harmo == 0 ) CALL ctl_stop( 'tide_init : No tidal components set in nam_tide' )
+ !
+ IF( ln_tide_ramp.AND.((nitend-nit000+1)*rdt/rday < rdttideramp) ) &
+ & CALL ctl_stop('rdttideramp must be lower than run duration')
+ IF( ln_tide_ramp.AND.(rdttideramp<0.) ) &
+ & CALL ctl_stop('rdttideramp must be positive')
+ !
+ ALLOCATE( ntide(nb_harmo) )
+ DO jk = 1, nb_harmo
+ DO ji = 1, jpmax_harmo
+ IF( TRIM(clname(jk)) == Wave(ji)%cname_tide ) THEN
+ ntide(jk) = ji
+ EXIT
+ ENDIF
+ END DO
+ END DO
+ !
+ ALLOCATE( omega_tide(nb_harmo), v0tide (nb_harmo), &
+ & utide (nb_harmo), ftide (nb_harmo) )
+ kt_tide = nit000
+ !
+ END SUBROUTINE tide_init
+
+ !!======================================================================
+END MODULE tideini
diff --git a/MY_SRC/usrdef_istate.F90 b/MY_SRC/usrdef_istate.F90
new file mode 100755
index 0000000..e7f1502
--- /dev/null
+++ b/MY_SRC/usrdef_istate.F90
@@ -0,0 +1,73 @@
+MODULE usrdef_istate
+ !!======================================================================
+ !! *** MODULE usrdef_istate ***
+ !!
+ !! === GYRE configuration ===
+ !!
+ !! User defined : set the initial state of a user configuration
+ !!======================================================================
+ !! History : NEMO ! 2016-03 (S. Flavoni) Original code
+ !!----------------------------------------------------------------------
+
+ !!----------------------------------------------------------------------
+ !! usr_def_istate : initial state in Temperature and salinity
+ !!----------------------------------------------------------------------
+ USE par_oce ! ocean space and time domain
+ USE phycst ! physical constants
+ !
+ USE in_out_manager ! I/O manager
+ USE lib_mpp ! MPP library
+
+ IMPLICIT NONE
+ PRIVATE
+
+ PUBLIC usr_def_istate ! called in istate.F90
+
+ !!----------------------------------------------------------------------
+ !! NEMO/OPA 4.0 , NEMO Consortium (2016)
+ !! $Id$
+ !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
+ !!----------------------------------------------------------------------
+CONTAINS
+
+ SUBROUTINE usr_def_istate( pdept, ptmask, pts, pu, pv, pssh )
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE usr_def_istate ***
+ !!
+ !! ** Purpose : Initialization of the dynamics and tracers
+ !! Here GYRE configuration example : (double gyre with rotated domain)
+ !!
+ !! ** Method : - set temprature field
+ !! - set salinity field
+ !!----------------------------------------------------------------------
+ REAL(wp), DIMENSION(jpi,jpj,jpk) , INTENT(in ) :: pdept ! depth of t-point [m]
+ REAL(wp), DIMENSION(jpi,jpj,jpk) , INTENT(in ) :: ptmask ! t-point ocean mask [m]
+ REAL(wp), DIMENSION(jpi,jpj,jpk,jpts), INTENT( out) :: pts ! T & S fields [Celsius ; g/kg]
+ REAL(wp), DIMENSION(jpi,jpj,jpk) , INTENT( out) :: pu ! i-component of the velocity [m/s]
+ REAL(wp), DIMENSION(jpi,jpj,jpk) , INTENT( out) :: pv ! j-component of the velocity [m/s]
+ REAL(wp), DIMENSION(jpi,jpj) , INTENT( out) :: pssh ! sea-surface height
+ !
+ INTEGER :: ji, jj, jk ! dummy loop indices
+ !!----------------------------------------------------------------------
+ !
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) 'usr_def_istate : analytical definition of initial state '
+ IF(lwp) WRITE(numout,*) '~~~~~~~~~~~~~~ Ocean at rest, with an horizontally uniform T and S profiles'
+ !
+ pu (:,:,:) = 0._wp ! ocean at rest
+ pv (:,:,:) = 0._wp
+ pssh(:,:) = 0._wp
+ !
+ DO jk = 1, jpk ! horizontally uniform T & S profiles
+ DO jj = 1, jpj
+ DO ji = 1, jpi
+ pts(ji,jj,jk,jp_tem) = 20._wp * ptmask(ji,jj,jk)
+ pts(ji,jj,jk,jp_sal) = 36.25_wp * ptmask(ji,jj,jk)
+ END DO
+ END DO
+ END DO
+ !
+ END SUBROUTINE usr_def_istate
+
+ !!======================================================================
+END MODULE usrdef_istate
diff --git a/MY_SRC/usrdef_sbc.F90 b/MY_SRC/usrdef_sbc.F90
new file mode 100755
index 0000000..9f0ef2f
--- /dev/null
+++ b/MY_SRC/usrdef_sbc.F90
@@ -0,0 +1,86 @@
+MODULE usrdef_sbc
+ !!======================================================================
+ !! *** MODULE usrdef_sbc ***
+ !!
+ !! === WAD_TEST_CASES configuration ===
+ !!
+ !! User defined : surface forcing of a user configuration
+ !!======================================================================
+ !! History : 4.0 ! 2016-03 (S. Flavoni, G. Madec) user defined interface
+ !!----------------------------------------------------------------------
+
+ !!----------------------------------------------------------------------
+ !! usrdef_sbc : user defined surface bounday conditions in WAD_TEST_CASES case
+ !!----------------------------------------------------------------------
+ USE oce ! ocean dynamics and tracers
+ USE dom_oce ! ocean space and time domain
+ USE sbc_oce ! Surface boundary condition: ocean fields
+ USE phycst ! physical constants
+ !
+ USE in_out_manager ! I/O manager
+ USE lib_mpp ! distribued memory computing library
+ USE lbclnk ! ocean lateral boundary conditions (or mpp link)
+ USE lib_fortran ! Fortran utilities (allows no signed zero when 'key_nosignedzero' defined)
+
+ IMPLICIT NONE
+ PRIVATE
+
+ PUBLIC usrdef_sbc_oce ! routine called in sbcmod module
+ PUBLIC usrdef_sbc_ice_tau ! routine called by sbcice_lim.F90 for ice dynamics
+ PUBLIC usrdef_sbc_ice_flx ! routine called by sbcice_lim.F90 for ice thermo
+
+ !! * Substitutions
+# include "vectopt_loop_substitute.h90"
+ !!----------------------------------------------------------------------
+ !! NEMO/OPA 4.0 , NEMO Consortium (2016)
+ !! $Id$
+ !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
+ !!----------------------------------------------------------------------
+CONTAINS
+
+ SUBROUTINE usrdef_sbc_oce( kt )
+ !!---------------------------------------------------------------------
+ !! *** ROUTINE usr_def_sbc ***
+ !!
+ !! ** Purpose : provide at each time-step the surface boundary
+ !! condition, i.e. the momentum, heat and freshwater fluxes.
+ !!
+ !! ** Method : all 0 fields, for WAD_TEST_CASES case
+ !! CAUTION : never mask the surface stress field !
+ !!
+ !! ** Action : - set to ZERO all the ocean surface boundary condition, i.e.
+ !! utau, vtau, taum, wndm, qns, qsr, emp, sfx
+ !!
+ !!----------------------------------------------------------------------
+ INTEGER, INTENT(in) :: kt ! ocean time step
+ !!---------------------------------------------------------------------
+ !
+ IF( kt == nit000 ) THEN
+ !
+ IF(lwp) WRITE(numout,*)' usr_sbc : WAD_TEST_CASES case: NO surface forcing'
+ IF(lwp) WRITE(numout,*)' ~~~~~~~~~~~ utau = vtau = taum = wndm = qns = qsr = emp = sfx = 0'
+ !
+ utau(:,:) = 0._wp
+ vtau(:,:) = 0._wp
+ taum(:,:) = 0._wp
+ wndm(:,:) = 0._wp
+ !
+ emp (:,:) = 0._wp
+ sfx (:,:) = 0._wp
+ qns (:,:) = 0._wp
+ qsr (:,:) = 0._wp
+ !
+ ENDIF
+ !
+ END SUBROUTINE usrdef_sbc_oce
+
+ SUBROUTINE usrdef_sbc_ice_tau( kt )
+ INTEGER, INTENT(in) :: kt ! ocean time step
+ END SUBROUTINE usrdef_sbc_ice_tau
+
+ SUBROUTINE usrdef_sbc_ice_flx( kt )
+ INTEGER, INTENT(in) :: kt ! ocean time step
+ END SUBROUTINE usrdef_sbc_ice_flx
+
+ !!======================================================================
+END MODULE usrdef_sbc
diff --git a/NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/sosie_initcd_T b/NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/sosie_initcd_T
new file mode 100644
index 0000000..8da08a5
--- /dev/null
+++ b/NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/sosie_initcd_T
@@ -0,0 +1,26 @@
+#!/bin/bash
+#PBS -N init_T
+#PBS -l select=serial=true:ncpus=1
+#PBS -l walltime=06:00:00
+#PBS -o init_T.log
+#PBS -e init_T.err
+#PBS -A n01-ACCORD
+###################################################
+
+module swap PrgEnv-cray PrgEnv-intel
+module load cray-hdf5-parallel
+module load cray-netcdf-hdf5parallel
+
+
+cd /home/n01/n01/jelt/sosie
+make clean
+make
+make install
+
+#set up paths
+cd /work/n01/n01/jelt/BoBEAS/INPUTS
+
+/home/n01/n01/jelt/local/bin/sosie.x -f initcd_votemper.namelist
+
+# qsub -q serial <filename>
+###################################################
diff --git a/NAMELISTS_AND_FORTRAN_FILES/f_files/dynnxt.F90 b/NAMELISTS_AND_FORTRAN_FILES/f_files/dynnxt.F90
new file mode 100644
index 0000000..756dfb5
--- /dev/null
+++ b/NAMELISTS_AND_FORTRAN_FILES/f_files/dynnxt.F90
@@ -0,0 +1,428 @@
+MODULE dynnxt
+ !!=========================================================================
+ !! *** MODULE dynnxt ***
+ !! Ocean dynamics: time stepping
+ !!=========================================================================
+ !! History : OPA ! 1987-02 (P. Andrich, D. L Hostis) Original code
+ !! ! 1990-10 (C. Levy, G. Madec)
+ !! 7.0 ! 1993-03 (M. Guyon) symetrical conditions
+ !! 8.0 ! 1997-02 (G. Madec & M. Imbard) opa, release 8.0
+ !! 8.2 ! 1997-04 (A. Weaver) Euler forward step
+ !! - ! 1997-06 (G. Madec) lateral boudary cond., lbc routine
+ !! NEMO 1.0 ! 2002-08 (G. Madec) F90: Free form and module
+ !! - ! 2002-10 (C. Talandier, A-M. Treguier) Open boundary cond.
+ !! 2.0 ! 2005-11 (V. Garnier) Surface pressure gradient organization
+ !! 2.3 ! 2007-07 (D. Storkey) Calls to BDY routines.
+ !! 3.2 ! 2009-06 (G. Madec, R.Benshila) re-introduce the vvl option
+ !! 3.3 ! 2010-09 (D. Storkey, E.O'Dea) Bug fix for BDY module
+ !! 3.3 ! 2011-03 (P. Oddo) Bug fix for time-splitting+(BDY-OBC) and not VVL
+ !! 3.5 ! 2013-07 (J. Chanut) Compliant with time splitting changes
+ !! 3.6 ! 2014-04 (G. Madec) add the diagnostic of the time filter trends
+ !! 3.7 ! 2015-11 (J. Chanut) Free surface simplification
+ !!-------------------------------------------------------------------------
+
+ !!-------------------------------------------------------------------------
+ !! dyn_nxt : obtain the next (after) horizontal velocity
+ !!-------------------------------------------------------------------------
+ USE oce ! ocean dynamics and tracers
+ USE dom_oce ! ocean space and time domain
+ USE sbc_oce ! Surface boundary condition: ocean fields
+ USE phycst ! physical constants
+ USE dynadv ! dynamics: vector invariant versus flux form
+ USE dynspg_ts ! surface pressure gradient: split-explicit scheme
+ USE dynspg
+ USE domvvl ! variable volume
+ USE bdy_oce , ONLY: ln_bdy
+ USE bdydta ! ocean open boundary conditions
+ USE bdydyn ! ocean open boundary conditions
+ USE bdyvol ! ocean open boundary condition (bdy_vol routines)
+ USE trd_oce ! trends: ocean variables
+ USE trddyn ! trend manager: dynamics
+ USE trdken ! trend manager: kinetic energy
+ !
+ USE in_out_manager ! I/O manager
+ USE iom ! I/O manager library
+ USE lbclnk ! lateral boundary condition (or mpp link)
+ USE lib_mpp ! MPP library
+ USE wrk_nemo ! Memory Allocation
+ USE prtctl ! Print control
+ USE timing ! Timing
+#if defined key_agrif
+ USE agrif_opa_interp
+#endif
+
+ IMPLICIT NONE
+ PRIVATE
+
+ PUBLIC dyn_nxt ! routine called by step.F90
+
+ !!----------------------------------------------------------------------
+ !! NEMO/OPA 3.3 , NEMO Consortium (2010)
+ !! $Id: dynnxt.F90 7753 2017-03-03 11:46:59Z mocavero $
+ !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
+ !!----------------------------------------------------------------------
+CONTAINS
+
+ SUBROUTINE dyn_nxt ( kt )
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE dyn_nxt ***
+ !!
+ !! ** Purpose : Finalize after horizontal velocity. Apply the boundary
+ !! condition on the after velocity, achieve the time stepping
+ !! by applying the Asselin filter on now fields and swapping
+ !! the fields.
+ !!
+ !! ** Method : * Ensure after velocities transport matches time splitting
+ !! estimate (ln_dynspg_ts=T)
+ !!
+ !! * Apply lateral boundary conditions on after velocity
+ !! at the local domain boundaries through lbc_lnk call,
+ !! at the one-way open boundaries (ln_bdy=T),
+ !! at the AGRIF zoom boundaries (lk_agrif=T)
+ !!
+ !! * Apply the time filter applied and swap of the dynamics
+ !! arrays to start the next time step:
+ !! (ub,vb) = (un,vn) + atfp [ (ub,vb) + (ua,va) - 2 (un,vn) ]
+ !! (un,vn) = (ua,va).
+ !! Note that with flux form advection and non linear free surface,
+ !! the time filter is applied on thickness weighted velocity.
+ !! As a result, dyn_nxt MUST be called after tra_nxt.
+ !!
+ !! ** Action : ub,vb filtered before horizontal velocity of next time-step
+ !! un,vn now horizontal velocity of next time-step
+ !!----------------------------------------------------------------------
+ INTEGER, INTENT( in ) :: kt ! ocean time-step index
+ !
+ INTEGER :: ji, jj, jk ! dummy loop indices
+ INTEGER :: ikt ! local integers
+ REAL(wp) :: zue3a, zue3n, zue3b, zuf, zcoef ! local scalars
+ REAL(wp) :: zve3a, zve3n, zve3b, zvf, z1_2dt ! - -
+ REAL(wp), POINTER, DIMENSION(:,:) :: zue, zve
+ REAL(wp), POINTER, DIMENSION(:,:,:) :: ze3u_f, ze3v_f, zua, zva
+ !!----------------------------------------------------------------------
+ !
+ IF( nn_timing == 1 ) CALL timing_start('dyn_nxt')
+ !
+ IF( ln_dynspg_ts ) CALL wrk_alloc( jpi,jpj, zue, zve)
+ IF( l_trddyn ) CALL wrk_alloc( jpi,jpj,jpk, zua, zva)
+ !
+ IF( kt == nit000 ) THEN
+ IF(lwp) WRITE(numout,*)
+ IF(lwp) WRITE(numout,*) 'dyn_nxt : time stepping'
+ IF(lwp) WRITE(numout,*) '~~~~~~~'
+ ENDIF
+
+ IF ( ln_dynspg_ts ) THEN
+ ! Ensure below that barotropic velocities match time splitting estimate
+ ! Compute actual transport and replace it with ts estimate at "after" time step
+ zue(:,:) = e3u_a(:,:,1) * ua(:,:,1) * umask(:,:,1)
+ zve(:,:) = e3v_a(:,:,1) * va(:,:,1) * vmask(:,:,1)
+ DO jk = 2, jpkm1
+ zue(:,:) = zue(:,:) + e3u_a(:,:,jk) * ua(:,:,jk) * umask(:,:,jk)
+ zve(:,:) = zve(:,:) + e3v_a(:,:,jk) * va(:,:,jk) * vmask(:,:,jk)
+ END DO
+ DO jk = 1, jpkm1
+ ua(:,:,jk) = ( ua(:,:,jk) - zue(:,:) * r1_hu_a(:,:) + ua_b(:,:) ) * umask(:,:,jk)
+ va(:,:,jk) = ( va(:,:,jk) - zve(:,:) * r1_hv_a(:,:) + va_b(:,:) ) * vmask(:,:,jk)
+ END DO
+ !
+ IF( .NOT.ln_bt_fw ) THEN
+ ! Remove advective velocity from "now velocities"
+ ! prior to asselin filtering
+ ! In the forward case, this is done below after asselin filtering
+ ! so that asselin contribution is removed at the same time
+ DO jk = 1, jpkm1
+ un(:,:,jk) = ( un(:,:,jk) - un_adv(:,:) + un_b(:,:) )*umask(:,:,jk)
+ vn(:,:,jk) = ( vn(:,:,jk) - vn_adv(:,:) + vn_b(:,:) )*vmask(:,:,jk)
+ END DO
+ ENDIF
+ ENDIF
+
+ ! Update after velocity on domain lateral boundaries
+ ! --------------------------------------------------
+# if defined key_agrif
+ CALL Agrif_dyn( kt ) !* AGRIF zoom boundaries
+# endif
+ !
+ CALL lbc_lnk( ua, 'U', -1. ) !* local domain boundaries
+ CALL lbc_lnk( va, 'V', -1. )
+ !
+ ! !* BDY open boundaries
+ IF( ln_bdy .AND. ln_dynspg_exp ) CALL bdy_dyn( kt )
+ IF( ln_bdy .AND. ln_dynspg_ts ) CALL bdy_dyn( kt, dyn3d_only=.true. )
+
+!!$ Do we need a call to bdy_vol here??
+ !
+ IF( l_trddyn ) THEN ! prepare the atf trend computation + some diagnostics
+ z1_2dt = 1._wp / (2. * rdt) ! Euler or leap-frog time step
+ IF( neuler == 0 .AND. kt == nit000 ) z1_2dt = 1._wp / rdt
+ !
+ ! ! Kinetic energy and Conversion
+ IF( ln_KE_trd ) CALL trd_dyn( ua, va, jpdyn_ken, kt )
+ !
+ IF( ln_dyn_trd ) THEN ! 3D output: total momentum trends
+ zua(:,:,:) = ( ua(:,:,:) - ub(:,:,:) ) * z1_2dt
+ zva(:,:,:) = ( va(:,:,:) - vb(:,:,:) ) * z1_2dt
+ CALL iom_put( "utrd_tot", zua ) ! total momentum trends, except the asselin time filter
+ CALL iom_put( "vtrd_tot", zva )
+ ENDIF
+ !
+ zua(:,:,:) = un(:,:,:) ! save the now velocity before the asselin filter
+ zva(:,:,:) = vn(:,:,:) ! (caution: there will be a shift by 1 timestep in the
+ ! ! computation of the asselin filter trends)
+ ENDIF
+
+ ! Time filter and swap of dynamics arrays
+ ! ------------------------------------------
+ IF( neuler == 0 .AND. kt == nit000 ) THEN !* Euler at first time-step: only swap
+ DO jk = 1, jpkm1
+ un(:,:,jk) = ua(:,:,jk) ! un <-- ua
+ vn(:,:,jk) = va(:,:,jk)
+ END DO
+!jth limit velocities
+ IF (ln_ulimit) THEN
+ call dyn_limit_velocity (kt)
+ ENDIF
+ IF(.NOT.ln_linssh ) THEN
+ DO jk = 1, jpkm1
+ e3t_b(:,:,jk) = e3t_n(:,:,jk)
+ e3u_b(:,:,jk) = e3u_n(:,:,jk)
+ e3v_b(:,:,jk) = e3v_n(:,:,jk)
+ END DO
+ ENDIF
+ ELSE !* Leap-Frog : Asselin filter and swap
+ ! ! =============!
+ IF( ln_linssh ) THEN ! Fixed volume !
+ ! ! =============!
+ DO jk = 1, jpkm1
+ DO jj = 1, jpj
+ DO ji = 1, jpi
+ zuf = un(ji,jj,jk) + atfp * ( ub(ji,jj,jk) - 2._wp * un(ji,jj,jk) + ua(ji,jj,jk) )
+ zvf = vn(ji,jj,jk) + atfp * ( vb(ji,jj,jk) - 2._wp * vn(ji,jj,jk) + va(ji,jj,jk) )
+ !
+ ub(ji,jj,jk) = zuf ! ub <-- filtered velocity
+ vb(ji,jj,jk) = zvf
+ un(ji,jj,jk) = ua(ji,jj,jk) ! un <-- ua
+ vn(ji,jj,jk) = va(ji,jj,jk)
+ END DO
+ END DO
+ END DO
+!jth
+ IF (ln_ulimit) THEN
+ call dyn_limit_velocity (kt)
+ ENDIF
+ ! ! ================!
+ ELSE ! Variable volume !
+ ! ! ================!
+ ! Before scale factor at t-points
+ ! (used as a now filtered scale factor until the swap)
+ ! ----------------------------------------------------
+ IF( ln_dynspg_ts .AND. ln_bt_fw ) THEN ! No asselin filtering on thicknesses if forward time splitting
+ e3t_b(:,:,1:jpkm1) = e3t_n(:,:,1:jpkm1)
+ ELSE
+ DO jk = 1, jpkm1
+ e3t_b(:,:,jk) = e3t_n(:,:,jk) + atfp * ( e3t_b(:,:,jk) - 2._wp * e3t_n(:,:,jk) + e3t_a(:,:,jk) )
+ END DO
+ ! Add volume filter correction: compatibility with tracer advection scheme
+ ! => time filter + conservation correction (only at the first level)
+ zcoef = atfp * rdt * r1_rau0
+ IF ( .NOT. ln_isf ) THEN ! if no ice shelf melting
+ e3t_b(:,:,1) = e3t_b(:,:,1) - zcoef * ( emp_b(:,:) - emp(:,:) &
+ & - rnf_b(:,:) + rnf(:,:) ) * tmask(:,:,1)
+ ELSE ! if ice shelf melting
+ DO jj = 1, jpj
+ DO ji = 1, jpi
+ ikt = mikt(ji,jj)
+ e3t_b(ji,jj,ikt) = e3t_b(ji,jj,ikt) - zcoef * ( emp_b (ji,jj) - emp (ji,jj) &
+ & - rnf_b (ji,jj) + rnf (ji,jj) &
+ & + fwfisf_b(ji,jj) - fwfisf(ji,jj) ) * tmask(ji,jj,ikt)
+ END DO
+ END DO
+ END IF
+ ENDIF
+ !
+ IF( ln_dynadv_vec ) THEN ! Asselin filter applied on velocity
+ ! Before filtered scale factor at (u/v)-points
+ CALL dom_vvl_interpol( e3t_b(:,:,:), e3u_b(:,:,:), 'U' )
+ CALL dom_vvl_interpol( e3t_b(:,:,:), e3v_b(:,:,:), 'V' )
+ DO jk = 1, jpkm1
+ DO jj = 1, jpj
+ DO ji = 1, jpi
+ zuf = un(ji,jj,jk) + atfp * ( ub(ji,jj,jk) - 2._wp * un(ji,jj,jk) + ua(ji,jj,jk) )
+ zvf = vn(ji,jj,jk) + atfp * ( vb(ji,jj,jk) - 2._wp * vn(ji,jj,jk) + va(ji,jj,jk) )
+ !
+ ub(ji,jj,jk) = zuf ! ub <-- filtered velocity
+ vb(ji,jj,jk) = zvf
+ un(ji,jj,jk) = ua(ji,jj,jk) ! un <-- ua
+ vn(ji,jj,jk) = va(ji,jj,jk)
+ END DO
+ END DO
+ END DO
+!jth limit velocities
+ IF (ln_ulimit) THEN
+ call dyn_limit_velocity (kt)
+ ENDIF
+ !
+ ELSE ! Asselin filter applied on thickness weighted velocity
+ !
+ CALL wrk_alloc( jpi,jpj,jpk, ze3u_f, ze3v_f )
+ ! Before filtered scale factor at (u/v)-points stored in ze3u_f, ze3v_f
+ CALL dom_vvl_interpol( e3t_b(:,:,:), ze3u_f, 'U' )
+ CALL dom_vvl_interpol( e3t_b(:,:,:), ze3v_f, 'V' )
+ DO jk = 1, jpkm1
+ DO jj = 1, jpj
+ DO ji = 1, jpi
+ zue3a = e3u_a(ji,jj,jk) * ua(ji,jj,jk)
+ zve3a = e3v_a(ji,jj,jk) * va(ji,jj,jk)
+ zue3n = e3u_n(ji,jj,jk) * un(ji,jj,jk)
+ zve3n = e3v_n(ji,jj,jk) * vn(ji,jj,jk)
+ zue3b = e3u_b(ji,jj,jk) * ub(ji,jj,jk)
+ zve3b = e3v_b(ji,jj,jk) * vb(ji,jj,jk)
+ !
+ zuf = ( zue3n + atfp * ( zue3b - 2._wp * zue3n + zue3a ) ) / ze3u_f(ji,jj,jk)
+ zvf = ( zve3n + atfp * ( zve3b - 2._wp * zve3n + zve3a ) ) / ze3v_f(ji,jj,jk)
+ !
+ ub(ji,jj,jk) = zuf ! ub <-- filtered velocity
+ vb(ji,jj,jk) = zvf
+ un(ji,jj,jk) = ua(ji,jj,jk) ! un <-- ua
+ vn(ji,jj,jk) = va(ji,jj,jk)
+ END DO
+ END DO
+ END DO
+!jth limit velocities
+ IF (ln_ulimit) THEN
+ call dyn_limit_velocity (kt)
+ ENDIF
+ e3u_b(:,:,1:jpkm1) = ze3u_f(:,:,1:jpkm1) ! e3u_b <-- filtered scale factor
+ e3v_b(:,:,1:jpkm1) = ze3v_f(:,:,1:jpkm1)
+ !
+ CALL wrk_dealloc( jpi,jpj,jpk, ze3u_f, ze3v_f )
+ ENDIF
+ !
+ ENDIF
+ !
+ IF( ln_dynspg_ts .AND. ln_bt_fw ) THEN
+ ! Revert "before" velocities to time split estimate
+ ! Doing it here also means that asselin filter contribution is removed
+ zue(:,:) = e3u_b(:,:,1) * ub(:,:,1) * umask(:,:,1)
+ zve(:,:) = e3v_b(:,:,1) * vb(:,:,1) * vmask(:,:,1)
+ DO jk = 2, jpkm1
+ zue(:,:) = zue(:,:) + e3u_b(:,:,jk) * ub(:,:,jk) * umask(:,:,jk)
+ zve(:,:) = zve(:,:) + e3v_b(:,:,jk) * vb(:,:,jk) * vmask(:,:,jk)
+ END DO
+ DO jk = 1, jpkm1
+ ub(:,:,jk) = ub(:,:,jk) - (zue(:,:) * r1_hu_n(:,:) - un_b(:,:)) * umask(:,:,jk)
+ vb(:,:,jk) = vb(:,:,jk) - (zve(:,:) * r1_hv_n(:,:) - vn_b(:,:)) * vmask(:,:,jk)
+ END DO
+ ENDIF
+ !
+ ENDIF ! neuler =/0
+ !
+ ! Set "now" and "before" barotropic velocities for next time step:
+ ! JC: Would be more clever to swap variables than to make a full vertical
+ ! integration
+ !
+ !
+ IF(.NOT.ln_linssh ) THEN
+ hu_b(:,:) = e3u_b(:,:,1) * umask(:,:,1)
+ hv_b(:,:) = e3v_b(:,:,1) * vmask(:,:,1)
+ DO jk = 2, jpkm1
+ hu_b(:,:) = hu_b(:,:) + e3u_b(:,:,jk) * umask(:,:,jk)
+ hv_b(:,:) = hv_b(:,:) + e3v_b(:,:,jk) * vmask(:,:,jk)
+ END DO
+ r1_hu_b(:,:) = ssumask(:,:) / ( hu_b(:,:) + 1._wp - ssumask(:,:) )
+ r1_hv_b(:,:) = ssvmask(:,:) / ( hv_b(:,:) + 1._wp - ssvmask(:,:) )
+ ENDIF
+ !
+ un_b(:,:) = e3u_a(:,:,1) * un(:,:,1) * umask(:,:,1)
+ ub_b(:,:) = e3u_b(:,:,1) * ub(:,:,1) * umask(:,:,1)
+ vn_b(:,:) = e3v_a(:,:,1) * vn(:,:,1) * vmask(:,:,1)
+ vb_b(:,:) = e3v_b(:,:,1) * vb(:,:,1) * vmask(:,:,1)
+ DO jk = 2, jpkm1
+ un_b(:,:) = un_b(:,:) + e3u_a(:,:,jk) * un(:,:,jk) * umask(:,:,jk)
+ ub_b(:,:) = ub_b(:,:) + e3u_b(:,:,jk) * ub(:,:,jk) * umask(:,:,jk)
+ vn_b(:,:) = vn_b(:,:) + e3v_a(:,:,jk) * vn(:,:,jk) * vmask(:,:,jk)
+ vb_b(:,:) = vb_b(:,:) + e3v_b(:,:,jk) * vb(:,:,jk) * vmask(:,:,jk)
+ END DO
+ un_b(:,:) = un_b(:,:) * r1_hu_a(:,:)
+ vn_b(:,:) = vn_b(:,:) * r1_hv_a(:,:)
+ ub_b(:,:) = ub_b(:,:) * r1_hu_b(:,:)
+ vb_b(:,:) = vb_b(:,:) * r1_hv_b(:,:)
+ !
+ IF( .NOT.ln_dynspg_ts ) THEN ! output the barotropic currents
+ CALL iom_put( "ubar", un_b(:,:) )
+ CALL iom_put( "vbar", vn_b(:,:) )
+ ENDIF
+ IF( l_trddyn ) THEN ! 3D output: asselin filter trends on momentum
+ zua(:,:,:) = ( ub(:,:,:) - zua(:,:,:) ) * z1_2dt
+ zva(:,:,:) = ( vb(:,:,:) - zva(:,:,:) ) * z1_2dt
+ CALL trd_dyn( zua, zva, jpdyn_atf, kt )
+ ENDIF
+ !
+ IF(ln_ctl) CALL prt_ctl( tab3d_1=un, clinfo1=' nxt - Un: ', mask1=umask, &
+ & tab3d_2=vn, clinfo2=' Vn: ' , mask2=vmask )
+ !
+ IF( ln_dynspg_ts ) CALL wrk_dealloc( jpi,jpj, zue, zve )
+ IF( l_trddyn ) CALL wrk_dealloc( jpi,jpj,jpk, zua, zva )
+ !
+ IF( nn_timing == 1 ) CALL timing_stop('dyn_nxt')
+ !
+ END SUBROUTINE dyn_nxt
+
+ SUBROUTINE dyn_limit_velocity (kt)
+ ! limits maxming vlaues of un and vn by volume courant number
+ INTEGER, INTENT( in ) :: kt ! ocean time-step index
+ !
+ INTEGER :: ji, jj, jk ! dummy loop indices
+ REAL(wp) :: zzu,zplim,zmlim,isp,ism,zcn,ze3e1,zzcn,zcnn,idivp,idivm
+
+ !!=========================================================================
+!jth limit fluxes
+ zcn =cn_ulimit !0.9 ! maximum velocity inverse courant number
+ zcnn = cnn_ulimit !0.54 ! how much to reduce cn by in divergen flow
+
+ DO jk = 1, jpkm1
+ DO jj = 1, jpjm1
+ DO ji = 1, jpim1
+! U direction
+ zzu = un(ji,jj,jk)
+ ze3e1 = e3u_n(ji ,jj,jk) * e2u(ji ,jj)
+! ips is 1 if flow is positive othersize zero
+ isp = 0.5 * (sign(1.0_wp,zzu) + 1.0_wp )
+ ism = -0.5 * (sign(1.0_wp,zzu) - 1.0_wp )
+!idev is 1 if divergent flow otherwise zero
+ idivp = isp * -0.5 * (sign(1.0_wp, un(ji-1,jj,jk)) - 1.0_wp )
+ idivm = ism * 0.5 * (sign(1.0_wp, un(ji+1,jj,jk)) + 1.0_wp )
+ zzcn = (idivp+idivm)*(zcnn-1.0_wp)+1.0_wp
+ zzcn = zzcn * zcn
+ zplim = zzcn * (e3t_n(ji ,jj,jk) * e1t(ji ,jj) * e2t(ji ,jj)) / (2.0*rdt * ze3e1)*umask(ji,jj,jk)
+ zmlim = -zzcn * (e3t_n(ji+1,jj,jk) * e1t(ji+1,jj) * e2t(ji+1,jj)) / (2.0*rdt * ze3e1)*umask(ji,jj,jk)
+!limit currents
+ un(ji,jj,jk) = min ( zzu,zplim) * isp + max (zzu,zmlim) *ism
+! if (abs(un(ji,jj,jk)) .ge. 20.) write(666,*) un(ji,jj,jk),ze3e1, isp,ism, zzu,e3t_n(ji+1,jj,jk)
+! call flush(666)
+! if (ji+nimpp-1==122 .and. jj+njmpp-1==149 .and. jk == 1 ) write (6,*) 'uu',un(ji,jj,jk), ze3e1, isp,ism, zzu,e3t_n(ji+1,jj,jk),e1t(ji+1,jj), e2t(ji+1,jj),zmlim
+! call flush(6)
+! V direction
+ zzu = vn(ji,jj,jk)
+ ze3e1 = e3v_n(ji ,jj,jk) * e1v(ji ,jj)
+ isp = 0.5 * (sign(1.0_wp,zzu) + 1.0_wp )
+ ism = -0.5 * (sign(1.0_wp,zzu) - 1.0_wp )
+!idev is 1 if divergent flow otherwise zero
+ idivp = isp * -0.5 * (sign(1.0_wp, vn(ji,jj-1,jk)) - 1.0_wp )
+ idivm = ism * 0.5 * (sign(1.0_wp, vn(ji,jj+1,jk)) + 1.0_wp )
+ zzcn = (idivp+idivm)*(zcnn-1.0_wp)+1.0_wp
+ zzcn = zzcn * zcn
+ zplim = zzcn * (e3t_n(ji,jj ,jk) * e1t(ji,jj ) * e2t(ji,jj )) / (2.0*rdt * ze3e1)*vmask(ji,jj,jk)
+ zmlim = -zzcn * (e3t_n(ji,jj+1,jk) * e1t(ji,jj+1) * e2t(ji,jj+1)) / (2.0*rdt * ze3e1)*vmask(ji,jj,jk)
+ vn(ji,jj,jk) = min ( zzu,zplim) * isp + max (zzu,zmlim) *ism
+! if (abs(vn(ji,jj,jk)) .ge. 20.) write(666,*) vn(ji,jj,jk), ze3e1, isp,ism, zzu,e3t_n(ji,jj+1,jk)
+! call flush(666)
+! if (ji+nimpp-1==122 .and. jj+njmpp-1==149 .and. jk == 1 ) write (6,*) 'vv',vn(ji,jj,jk), ze3e1, isp,ism, zzu,e3t_n(ji,jj+1,jk)
+
+ ENDDO
+ ENDDO
+ ENDDO
+
+ END SUBROUTINE dyn_limit_velocity
+END MODULE dynnxt
diff --git a/NAMELISTS_AND_FORTRAN_FILES/f_files/dynspg.F90 b/NAMELISTS_AND_FORTRAN_FILES/f_files/dynspg.F90
new file mode 100644
index 0000000..3fa4160
--- /dev/null
+++ b/NAMELISTS_AND_FORTRAN_FILES/f_files/dynspg.F90
@@ -0,0 +1,242 @@
+MODULE dynspg
+ !!======================================================================
+ !! *** MODULE dynspg ***
+ !! Ocean dynamics: surface pressure gradient control
+ !!======================================================================
+ !! History : 1.0 ! 2005-12 (C. Talandier, G. Madec, V. Garnier) Original code
+ !! 3.2 ! 2009-07 (R. Benshila) Suppression of rigid-lid option
+ !!----------------------------------------------------------------------
+
+ !!----------------------------------------------------------------------
+ !! dyn_spg : update the dynamics trend with surface pressure gradient
+ !! dyn_spg_init: initialization, namelist read, and parameters control
+ !!----------------------------------------------------------------------
+ USE oce ! ocean dynamics and tracers variables
+ USE dom_oce ! ocean space and time domain variables
+ USE c1d ! 1D vertical configuration
+ USE phycst ! physical constants
+ USE sbc_oce ! surface boundary condition: ocean
+ USE sbcapr ! surface boundary condition: atmospheric pressure
+ USE dynspg_exp ! surface pressure gradient (dyn_spg_exp routine)
+ USE dynspg_ts ! surface pressure gradient (dyn_spg_ts routine)
+ USE sbctide !
+ USE updtide !
+ USE trd_oce ! trends: ocean variables
+ USE trddyn ! trend manager: dynamics
+ !
+ USE prtctl ! Print control (prt_ctl routine)
+ USE in_out_manager ! I/O manager
+ USE lib_mpp ! MPP library
+ USE wrk_nemo ! Memory Allocation
+ USE timing ! Timing
+
+ IMPLICIT NONE
+ PRIVATE
+
+ PUBLIC dyn_spg ! routine called by step module
+ PUBLIC dyn_spg_init ! routine called by opa module
+
+ INTEGER :: nspg = 0 ! type of surface pressure gradient scheme defined from lk_dynspg_...
+!jth
+ LOGICAL, PUBLIC :: ln_ulimit
+ REAL(wp), PUBLIC :: cn_ulimit,cnn_ulimit
+!
+ ! ! Parameter to control the surface pressure gradient scheme
+ INTEGER, PARAMETER :: np_TS = 1 ! split-explicit time stepping (Time-Splitting)
+ INTEGER, PARAMETER :: np_EXP = 0 ! explicit time stepping
+ INTEGER, PARAMETER :: np_NO =-1 ! no surface pressure gradient, no scheme
+
+ !! * Substitutions
+# include "vectopt_loop_substitute.h90"
+ !!----------------------------------------------------------------------
+ !! NEMO/OPA 3.2 , LODYC-IPSL (2009)
+ !! $Id: dynspg.F90 7753 2017-03-03 11:46:59Z mocavero $
+ !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
+ !!----------------------------------------------------------------------
+CONTAINS
+
+ SUBROUTINE dyn_spg( kt )
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE dyn_spg ***
+ !!
+ !! ** Purpose : compute surface pressure gradient including the
+ !! atmospheric pressure forcing (ln_apr_dyn=T).
+ !!
+ !! ** Method : Two schemes:
+ !! - explicit : the spg is evaluated at now
+ !! - split-explicit : a time splitting technique is used
+ !!
+ !! ln_apr_dyn=T : the atmospheric pressure forcing is applied
+ !! as the gradient of the inverse barometer ssh:
+ !! apgu = - 1/rau0 di[apr] = 0.5*grav di[ssh_ib+ssh_ibb]
+ !! apgv = - 1/rau0 dj[apr] = 0.5*grav dj[ssh_ib+ssh_ibb]
+ !! Note that as all external forcing a time averaging over a two rdt
+ !! period is used to prevent the divergence of odd and even time step.
+ !!----------------------------------------------------------------------
+ INTEGER, INTENT(in ) :: kt ! ocean time-step index
+ !
+ INTEGER :: ji, jj, jk ! dummy loop indices
+ REAL(wp) :: z2dt, zg_2, zintp, zgrau0r ! temporary scalar
+ REAL(wp), POINTER, DIMENSION(:,:,:) :: ztrdu, ztrdv
+ REAL(wp), POINTER, DIMENSION(:,:) :: zpice
+ !!----------------------------------------------------------------------
+ !
+ IF( nn_timing == 1 ) CALL timing_start('dyn_spg')
+ !
+ IF( l_trddyn ) THEN ! temporary save of ta and sa trends
+ CALL wrk_alloc( jpi,jpj,jpk, ztrdu, ztrdv )
+ ztrdu(:,:,:) = ua(:,:,:)
+ ztrdv(:,:,:) = va(:,:,:)
+ ENDIF
+ !
+ IF( ln_apr_dyn & ! atmos. pressure
+ .OR. ( .NOT.ln_dynspg_ts .AND. (ln_tide_pot .AND. ln_tide) ) & ! tide potential (no time slitting)
+ .OR. nn_ice_embd == 2 ) THEN ! embedded sea-ice
+ !
+ DO jj = 2, jpjm1
+ DO ji = fs_2, fs_jpim1 ! vector opt.
+ spgu(ji,jj) = 0._wp
+ spgv(ji,jj) = 0._wp
+ END DO
+ END DO
+ !
+ IF( ln_apr_dyn .AND. .NOT.ln_dynspg_ts ) THEN !== Atmospheric pressure gradient (added later in time-split case) ==!
+ zg_2 = grav * 0.5
+ DO jj = 2, jpjm1 ! gradient of Patm using inverse barometer ssh
+ DO ji = fs_2, fs_jpim1 ! vector opt.
+ spgu(ji,jj) = spgu(ji,jj) + zg_2 * ( ssh_ib (ji+1,jj) - ssh_ib (ji,jj) &
+ & + ssh_ibb(ji+1,jj) - ssh_ibb(ji,jj) ) * r1_e1u(ji,jj)
+ spgv(ji,jj) = spgv(ji,jj) + zg_2 * ( ssh_ib (ji,jj+1) - ssh_ib (ji,jj) &
+ & + ssh_ibb(ji,jj+1) - ssh_ibb(ji,jj) ) * r1_e2v(ji,jj)
+ END DO
+ END DO
+ ENDIF
+ !
+ ! !== tide potential forcing term ==!
+ IF( .NOT.ln_dynspg_ts .AND. ( ln_tide_pot .AND. ln_tide ) ) THEN ! N.B. added directly at sub-time-step in ts-case
+ !
+ CALL upd_tide( kt ) ! update tide potential
+ !
+ DO jj = 2, jpjm1 ! add tide potential forcing
+ DO ji = fs_2, fs_jpim1 ! vector opt.
+ spgu(ji,jj) = spgu(ji,jj) + grav * ( pot_astro(ji+1,jj) - pot_astro(ji,jj) ) * r1_e1u(ji,jj)
+ spgv(ji,jj) = spgv(ji,jj) + grav * ( pot_astro(ji,jj+1) - pot_astro(ji,jj) ) * r1_e2v(ji,jj)
+ END DO
+ END DO
+ ENDIF
+ !
+ IF( nn_ice_embd == 2 ) THEN !== embedded sea ice: Pressure gradient due to snow-ice mass ==!
+ CALL wrk_alloc( jpi,jpj, zpice )
+ !
+ zintp = REAL( MOD( kt-1, nn_fsbc ) ) / REAL( nn_fsbc )
+ zgrau0r = - grav * r1_rau0
+ zpice(:,:) = ( zintp * snwice_mass(:,:) + ( 1.- zintp ) * snwice_mass_b(:,:) ) * zgrau0r
+ DO jj = 2, jpjm1
+ DO ji = fs_2, fs_jpim1 ! vector opt.
+ spgu(ji,jj) = spgu(ji,jj) + ( zpice(ji+1,jj) - zpice(ji,jj) ) * r1_e1u(ji,jj)
+ spgv(ji,jj) = spgv(ji,jj) + ( zpice(ji,jj+1) - zpice(ji,jj) ) * r1_e2v(ji,jj)
+ END DO
+ END DO
+ !
+ CALL wrk_dealloc( jpi,jpj, zpice )
+ ENDIF
+ !
+ DO jk = 1, jpkm1 !== Add all terms to the general trend
+ DO jj = 2, jpjm1
+ DO ji = fs_2, fs_jpim1 ! vector opt.
+ ua(ji,jj,jk) = ua(ji,jj,jk) + spgu(ji,jj)
+ va(ji,jj,jk) = va(ji,jj,jk) + spgv(ji,jj)
+ END DO
+ END DO
+ END DO
+ !
+!!gm add here a call to dyn_trd for ice pressure gradient, the surf pressure trends ????
+ !
+ ENDIF
+ !
+ SELECT CASE ( nspg ) !== surface pressure gradient computed and add to the general trend ==!
+ CASE ( np_EXP ) ; CALL dyn_spg_exp( kt ) ! explicit
+ CASE ( np_TS ) ; CALL dyn_spg_ts ( kt ) ! time-splitting
+ END SELECT
+ !
+ IF( l_trddyn ) THEN ! save the surface pressure gradient trends for further diagnostics
+ ztrdu(:,:,:) = ua(:,:,:) - ztrdu(:,:,:)
+ ztrdv(:,:,:) = va(:,:,:) - ztrdv(:,:,:)
+ CALL trd_dyn( ztrdu, ztrdv, jpdyn_spg, kt )
+ CALL wrk_dealloc( jpi,jpj,jpk, ztrdu, ztrdv )
+ ENDIF
+ ! ! print mean trends (used for debugging)
+ IF(ln_ctl) CALL prt_ctl( tab3d_1=ua, clinfo1=' spg - Ua: ', mask1=umask, &
+ & tab3d_2=va, clinfo2= ' Va: ', mask2=vmask, clinfo3='dyn' )
+ !
+ IF( nn_timing == 1 ) CALL timing_stop('dyn_spg')
+ !
+ END SUBROUTINE dyn_spg
+
+
+ SUBROUTINE dyn_spg_init
+ !!---------------------------------------------------------------------
+ !! *** ROUTINE dyn_spg_init ***
+ !!
+ !! ** Purpose : Control the consistency between namelist options for
+ !! surface pressure gradient schemes
+ !!----------------------------------------------------------------------
+ INTEGER :: ioptio, ios ! local integers
+ !
+ NAMELIST/namdyn_spg/ ln_dynspg_exp , ln_dynspg_ts, &
+ & ln_bt_fw, ln_bt_av , ln_bt_auto , &
+ & nn_baro , rn_bt_cmax, nn_bt_flt,ln_ulimit,cn_ulimit,cnn_ulimit
+ !!----------------------------------------------------------------------
+ !
+ IF( nn_timing == 1 ) CALL timing_start('dyn_spg_init')
+ !
+ REWIND( numnam_ref ) ! Namelist namdyn_spg in reference namelist : Free surface
+ READ ( numnam_ref, namdyn_spg, IOSTAT = ios, ERR = 901)
+901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namdyn_spg in reference namelist', lwp )
+ !
+ REWIND( numnam_cfg ) ! Namelist namdyn_spg in configuration namelist : Free surface
+ READ ( numnam_cfg, namdyn_spg, IOSTAT = ios, ERR = 902 )
+902 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namdyn_spg in configuration namelist', lwp )
+ IF(lwm) WRITE ( numond, namdyn_spg )
+ !
+ IF(lwp) THEN ! Namelist print
+ WRITE(numout,*)
+ WRITE(numout,*) 'dyn_spg_init : choice of the surface pressure gradient scheme'
+ WRITE(numout,*) '~~~~~~~~~~~'
+ WRITE(numout,*) ' Explicit free surface ln_dynspg_exp = ', ln_dynspg_exp
+ WRITE(numout,*) ' Free surface with time splitting ln_dynspg_ts = ', ln_dynspg_ts
+
+ write(numout,*) ' Limit velocities ln_ulimit = ',ln_ulimit
+ write(numout,*) ' Limit velocities max inverse Courant number = ',cn_ulimit
+ write(numout,*) ' Limit velocities multiplier for divergant flow = ',cnn_ulimit
+
+ ENDIF
+ ! ! Control of surface pressure gradient scheme options
+ nspg = np_NO ; ioptio = 0
+ IF( ln_dynspg_exp ) THEN ; nspg = np_EXP ; ioptio = ioptio + 1 ; ENDIF
+ IF( ln_dynspg_ts ) THEN ; nspg = np_TS ; ioptio = ioptio + 1 ; ENDIF
+ !
+ IF( ioptio > 1 ) CALL ctl_stop( 'Choose only one surface pressure gradient scheme' )
+ IF( ioptio == 0 ) CALL ctl_warn( 'NO surface pressure gradient trend in momentum Eqs.' )
+ IF( ln_dynspg_exp .AND. ln_isfcav ) &
+ & CALL ctl_stop( ' dynspg_exp not tested with ice shelf cavity ' )
+ !
+ IF(lwp) THEN
+ WRITE(numout,*)
+ IF( nspg == np_EXP ) WRITE(numout,*) ' ===>> explicit free surface'
+ IF( nspg == np_TS ) WRITE(numout,*) ' ===>> free surface with time splitting scheme'
+ IF( nspg == np_NO ) WRITE(numout,*) ' ===>> No surface surface pressure gradient trend in momentum Eqs.'
+ ENDIF
+ !
+ IF( nspg == np_TS ) THEN ! split-explicit scheme initialisation
+ CALL dyn_spg_ts_init ! do it first: set nn_baro used to allocate some arrays later on
+ IF( dyn_spg_ts_alloc() /= 0 ) CALL ctl_stop('STOP', 'dyn_spg_init: failed to allocate dynspg_ts arrays' )
+ IF( neuler/=0 .AND. ln_bt_fw ) CALL ts_rst( nit000, 'READ' )
+ ENDIF
+ !
+ IF( nn_timing == 1 ) CALL timing_stop('dyn_spg_init')
+ !
+ END SUBROUTINE dyn_spg_init
+
+ !!======================================================================
+END MODULE dynspg
diff --git a/SCRIPTS/make_nemo.sh b/SCRIPTS/make_nemo.sh
index ca98593..95cb5a3 100755
--- a/SCRIPTS/make_nemo.sh
+++ b/SCRIPTS/make_nemo.sh
@@ -1,7 +1,7 @@
svn co http://forge.ipsl.jussieu.fr/nemo/svn/trunk/NEMOGCM@8395 $NEMO/trunk_NEMOGCM_r8395
-#cp $GITCLONE/ARCH/arch-XC_ARCHER_INTEL.fcm $CDIR/../ARCH/
-cp $ARCH/arch-XC_ARCHER_INTEL.fcm $CDIR/../ARCH/
+cp $GITCLONE/ARCH/arch-XC_ARCHER_INTEL.fcm $CDIR/../ARCH/
+#cp $ARCH/arch-XC_ARCHER_INTEL.fcm $CDIR/../ARCH/
cd $CDIR
@@ -10,10 +10,10 @@ printf 'y\nn\nn\nn\nn\nn\nn\nn\n' | ./makenemo -n $CONFIG -m XC_ARCHER_INTEL -j
./makenemo -n $CONFIG -m XC_ARCHER_INTEL -j 10 clean
-#cp $GITCLONE/MY_SRC/* $CDIR/$CONFIG/MY_SRC/.
-cp $GFILE/f_files/* $CDIR/$CONFIG/MY_SRC/.
-#cp $GITCLONE/cpp_file.fcm $CONFIG/cpp_$CONFIG.fcm
-cp $GFILE/cpp_file.fcm $CONFIG/cpp_$CONFIG.fcm
+cp $GITCLONE/MY_SRC/* $CDIR/$CONFIG/MY_SRC/.
+#cp $GFILE/f_files/* $CDIR/$CONFIG/MY_SRC/.
+cp $GITCLONE/cpp_file.fcm $CONFIG/cpp_$CONFIG.fcm
+#cp $GFILE/cpp_file.fcm $CONFIG/cpp_$CONFIG.fcm
./makenemo -n $CONFIG -m XC_ARCHER_INTEL -j 10
diff --git a/SCRIPTS/make_paths.sh b/SCRIPTS/make_paths.sh
index a8fee99..08de871 100755
--- a/SCRIPTS/make_paths.sh
+++ b/SCRIPTS/make_paths.sh
@@ -1,4 +1,4 @@
-export CONFIG=INDIAN_OCEAN_AUTO
+export CONFIG=BoBEAS
export WORK=/work/n01/n01/$USER
export AWORK=/work/n01/n01/ashbre
export WDIR=$WORK/$CONFIG
diff --git a/cpp_file.fcm b/cpp_file.fcm
new file mode 100755
index 0000000..e2cd675
--- /dev/null
+++ b/cpp_file.fcm
@@ -0,0 +1,6 @@
+bld::tool::fppkeys key_zdfgls \
+key_FES14_tides \
+key_diaharm_fast \
+key_mpp_mpi \
+key_iomput \
+key_nosignedzero
--
GitLab
From cd2d1aae96eef1590189a81ec0f8d3c47b3b98a0 Mon Sep 17 00:00:00 2001
From: Dr Jeff Polton <jpolton@gmail.com>
Date: Fri, 17 May 2019 22:11:04 +0100
Subject: [PATCH 03/18] ensure target grid has same number of levels as child
---
.../INITIAL_CONDITION/initcd_vosaline.namelist | 4 ++--
.../INITIAL_CONDITION/initcd_votemper.namelist | 4 ++--
2 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/initcd_vosaline.namelist b/NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/initcd_vosaline.namelist
index 23f7f21..67f32f8 100755
--- a/NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/initcd_vosaline.namelist
+++ b/NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/initcd_vosaline.namelist
@@ -156,8 +156,8 @@ ismooth = 0
&n3d
cf_z_in = 'initcd_vosaline.nc'
cv_z_in = 'gdept'
-cf_z_out = 'initcd_vosaline.nc'
-cv_z_out = 'gdept'
+cf_z_out = 'domain_cfg.nc'
+cv_z_out = 'nav_lev'
cv_z_out_name = 'gdept'
ctype_z_in = 'z'
ctype_z_out = 'z'
diff --git a/NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/initcd_votemper.namelist b/NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/initcd_votemper.namelist
index 5026472..215dd75 100755
--- a/NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/initcd_votemper.namelist
+++ b/NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/initcd_votemper.namelist
@@ -156,8 +156,8 @@ ismooth = 0
&n3d
cf_z_in = 'initcd_votemper.nc'
cv_z_in = 'gdept'
-cf_z_out = 'initcd_votemper.nc'
-cv_z_out = 'gdept'
+cf_z_out = 'domain_cfg.nc'
+cv_z_out = 'nav_lev'
cv_z_out_name = 'gdept'
ctype_z_in = 'z'
ctype_z_out = 'z'
--
GitLab
From 265258b0b751facd6d5ca6c144d210ddf6e2645d Mon Sep 17 00:00:00 2001
From: Dr Jeff Polton <jpolton@gmail.com>
Date: Fri, 17 May 2019 22:26:41 +0100
Subject: [PATCH 04/18] first attempt at Apr19 cold start
---
EXP_Apr19/context_nemo.xml | 120 +++
EXP_Apr19/domain_def_nemo.xml | 258 ++++++
EXP_Apr19/field_def_nemo-lim.xml | 182 ++++
EXP_Apr19/field_def_nemo-opa.xml | 1107 ++++++++++++++++++++++++
EXP_Apr19/field_def_nemo-pisces.xml | 298 +++++++
EXP_Apr19/file_def_nemo-opa.xml | 55 ++
EXP_Apr19/file_def_nemo.xml | 151 ++++
EXP_Apr19/iodef.xml | 27 +
EXP_Apr19/namelist_cfg | 407 +++++++++
EXP_Apr19/namelist_ref | 1200 +++++++++++++++++++++++++++
EXP_Apr19/run_script.pbs | 41 +
11 files changed, 3846 insertions(+)
create mode 100755 EXP_Apr19/context_nemo.xml
create mode 100755 EXP_Apr19/domain_def_nemo.xml
create mode 100755 EXP_Apr19/field_def_nemo-lim.xml
create mode 100755 EXP_Apr19/field_def_nemo-opa.xml
create mode 100755 EXP_Apr19/field_def_nemo-pisces.xml
create mode 100755 EXP_Apr19/file_def_nemo-opa.xml
create mode 100755 EXP_Apr19/file_def_nemo.xml
create mode 100755 EXP_Apr19/iodef.xml
create mode 100755 EXP_Apr19/namelist_cfg
create mode 100755 EXP_Apr19/namelist_ref
create mode 100755 EXP_Apr19/run_script.pbs
diff --git a/EXP_Apr19/context_nemo.xml b/EXP_Apr19/context_nemo.xml
new file mode 100755
index 0000000..4ab125f
--- /dev/null
+++ b/EXP_Apr19/context_nemo.xml
@@ -0,0 +1,120 @@
+<!--
+ ==============================================================================================
+ NEMO context
+==============================================================================================
+-->
+<context id="nemo">
+<!-- $id$ -->
+<!-- Fields definition -->
+ <field_definition src="./field_def_nemo-opa.xml"/> <!-- NEMO ocean dynamics -->
+
+<!-- Files definition -->
+ <file_definition src="./file_def_nemo.xml"/> <!-- NEMO ocean dynamics -->
+ <!--
+============================================================================================================
+= grid definition = = DO NOT CHANGE =
+============================================================================================================
+ -->
+
+ <axis_definition>
+ <axis id="deptht" long_name="Vertical T levels" unit="m" positive="down" />
+ <axis id="depthu" long_name="Vertical U levels" unit="m" positive="down" />
+ <axis id="depthv" long_name="Vertical V levels" unit="m" positive="down" />
+ <axis id="depthw" long_name="Vertical W levels" unit="m" positive="down" />
+ <axis id="nfloat" long_name="Float number" unit="-" />
+ <axis id="icbcla" long_name="Iceberg class" unit="1" />
+ <axis id="ncatice" long_name="Ice category" unit="1" />
+ <axis id="iax_20C" long_name="20 degC isotherm" unit="degC" />
+ <axis id="iax_28C" long_name="28 degC isotherm" unit="degC" />
+ </axis_definition>
+
+ <domain_definition src="./domain_def_nemo.xml"/>
+
+ <grid_definition>
+
+ <!-- -->
+ <grid id="grid_T_2D" >
+ <domain id="grid_T" />
+ </grid>
+ <!-- -->
+ <grid id="grid_T_3D_ncatice" >
+ <domain id="grid_T" />
+ <axis id="ncatice" />
+ </grid>
+ <!-- -->
+ <grid id="grid_T_3D" >
+ <domain id="grid_T" />
+ <axis id="deptht" />
+ </grid>
+ <!-- -->
+ <grid id="grid_U_2D" >
+ <domain id="grid_U" />
+ </grid>
+ <!-- -->
+ <grid id="grid_U_3D" >
+ <domain id="grid_U" />
+ <axis id="depthu" />
+ </grid>
+ <!-- -->
+ <grid id="grid_V_2D" >
+ <domain id="grid_V" />
+ </grid>
+ <!-- -->
+ <grid id="grid_V_3D" >
+ <domain id="grid_V" />
+ <axis id="depthv" />
+ </grid>
+ <!-- -->
+ <grid id="grid_W_2D" >
+ <domain id="grid_W" />
+ </grid>
+ <!-- -->
+ <grid id="grid_W_3D" >
+ <domain id="grid_W" />
+ <axis id="depthw" />
+ </grid>
+ <!-- -->
+ <grid id="grid_1point" >
+ <domain domain_ref="1point"/>
+ </grid>
+ <!-- -->
+ <grid id="grid_T_nfloat" >
+ <domain id="grid_T" />
+ <axis id="nfloat" />
+ </grid>
+ <!-- -->
+ <grid id="grid_EqT" >
+ <domain domain_ref="EqT" />
+ </grid>
+ <!-- -->
+ <grid id="grid_znl_T_2D">
+ <domain id="gznl" />
+ </grid>
+ <!-- -->
+ <grid id="grid_znl_T_3D">
+ <domain id="gznl" />
+ <axis id="deptht" />
+ </grid>
+ <!-- -->
+ <grid id="grid_znl_W_3D">
+ <domain id="gznl" />
+ <axis id="depthw" />
+ </grid>
+
+ <grid id="grid_ptr_T_2D">
+ <domain id="ptr" />
+ </grid>
+
+ <grid id="grid_ptr_T_3D">
+ <domain id="ptr" />
+ <axis id="deptht" />
+ </grid>
+
+ <grid id="grid_ptr_W_3D">
+ <domain id="ptr" />
+ <axis id="depthw" />
+ </grid>
+
+ </grid_definition>
+
+</context>
diff --git a/EXP_Apr19/domain_def_nemo.xml b/EXP_Apr19/domain_def_nemo.xml
new file mode 100755
index 0000000..a8f71f8
--- /dev/null
+++ b/EXP_Apr19/domain_def_nemo.xml
@@ -0,0 +1,258 @@
+
+ <domain_definition>
+ <domain_group id="grid_T">
+ <domain id="grid_T" long_name="grid T"/>
+ <!-- My zoom: example of hand defined zoom -->
+
+ <domain id="moorT" ibegin="39" jbegin="82" ni="1" nj="1" />
+
+ <domain id="sec01T" ibegin="33" jbegin="62" ni="28" nj="1" />
+ <domain id="sec02T" ibegin="34" jbegin="68" ni="27" nj="1" />
+ <domain id="sec03T" ibegin="29" jbegin="75" ni="18" nj="1" />
+ <domain id="sec04T" ibegin="29" jbegin="80" ni="16" nj="1" />
+ <domain id="sec05T" ibegin="25" jbegin="88" ni="12" nj="1" />
+ <domain id="sec06T" ibegin="25" jbegin="91" ni="7" nj="1" />
+ <domain id="sec07T" ibegin="25" jbegin="92" ni="3" nj="1" />
+ <domain id="sec08T" ibegin="57" jbegin="77" ni="4" nj="1" />
+ <domain id="sec09T" ibegin="61" jbegin="62" ni="1" nj="15" />
+
+ <domain id="sec00ST" ibegin="2" jbegin="2" ni="115" nj="1" />
+ <domain id="sec00NT" ibegin="2" jbegin="104" ni="115" nj="1" />
+ <domain id="sec00WT" ibegin="2" jbegin="2" ni="1" nj="103" />
+ <domain id="sec00ET" ibegin="116" jbegin="2" ni="1" nj="103" />
+
+ <domain id="1point" domain_ref="grid_T" >
+ <zoom_domain id="1point" ibegin="139" jbegin="119" ni="1" nj="1" />
+ </domain>
+ <!-- Eq section -->
+ <domain id="EqT" domain_ref="grid_T" >
+ <zoom_domain id="EqT" ibegin="0" jbegin="0000" ni="0000" nj="1" />
+ </domain>
+ <!-- TAO : see example above -->
+ <!-- 137e -->
+ <!-- <domain id="2n137eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="5n137eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="8n137eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <\!-- 147e -\-> -->
+ <!-- <domain id="0n147eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="2n147eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="5n147eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <\!-- 156e -\-> -->
+ <!-- <domain id="5s156eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="2s156eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="0n156eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="2n156eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="5n156eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="8n156eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <\!-- 165e -\-> -->
+ <!-- <domain id="8s165eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="5s165eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="2s165eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="0n165eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="2n165eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="5n165eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="8n165eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <\!-- 180w -\-> -->
+ <!-- <domain id="8s180wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="5s180wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="2s180wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="0n180wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="2n180wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="5n180wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="8n180wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <\!-- 170w -\-> -->
+ <!-- <domain id="8s170wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="5s170wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="2s170wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="0n170wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="2n170wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="5n170wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="8n170wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <\!-- 155w -\-> -->
+ <!-- <domain id="8s155wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="5s155wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="2s155wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="0n155wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="2n155wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="5n155wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="8n155wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <\!-- 140w -\-> -->
+ <!-- <domain id="8s140wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="5s140wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="2s140wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="0n140wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="2n140wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="5n140wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="8n140wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <\!-- 125w -\-> -->
+ <!-- <domain id="8s125wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="5s125wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="2s125wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="0n125wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="2n125wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="5n125wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="8n125wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <\!-- 110w -\-> -->
+ <!-- <domain id="8s110wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="5s110wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="2s110wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="0n110wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="2n110wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="5n110wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="8n110wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <\!-- 95w -\-> -->
+ <!-- <domain id="8s95wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="5s95wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="2s95wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="0n95wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="2n95wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="5n95wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="8n95wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <\!-- RAMA -\-> -->
+ <!-- <\!-- 55e -\-> -->
+ <!-- <domain id="16s55eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="12s55eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="8s55eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="4s55eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="1.5s55eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="0n55eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="1.5n55eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="4n55eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <\!-- 65e -\-> -->
+ <!-- <domain id="15n65eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <\!-- 67e -\-> -->
+ <!-- <domain id="16s67eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="12s67eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="8s67eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="4s67eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="1.5s67eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="0n67eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="1.5n67eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="4n67eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="8n67eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <\!-- 80.5e -\-> -->
+ <!-- <domain id="16s80.5eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="12s80.5eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="8s80.5eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="4s80.5eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="1.5s80.5eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="0n80.5eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="1.5n80.5eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="4n80.5eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <\!-- 90e -\-> -->
+ <!-- <domain id="1.5s90eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="0n90eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="1.5n90eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="4n90eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="8n90eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="12n90eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="15n90eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <\!-- 95e -\-> -->
+ <!-- <domain id="16s95eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="12s95eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="8s95eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="5s95eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <\!-- PIRATA -\-> -->
+ <!-- <\!-- 38w-30w -\-> -->
+ <!-- <domain id="19s34wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="14s32wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="8s30wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="0n35wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="4n38wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="8n38wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="12n38wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="15n38wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="20n38wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <\!-- 23w -\-> -->
+ <!-- <domain id="0n23wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="4n23wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="12n23wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="21n23wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <\!-- 10w -\-> -->
+ <!-- <domain id="10s10wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="6s10wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <domain id="0n10wT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+ <!-- <\!-- 0e -\-> -->
+ <!-- <domain id="0n0eT" domain_ref="grid_T" ibegin="0000" jbegin="0000" ni="1" nj="1" /> -->
+
+ </domain_group>
+
+ <domain_group id="grid_U">
+ <domain id="grid_U" long_name="grid U"/>
+ <!-- My zoom: example of hand defined zoom -->
+ <domain id="moorU" ibegin="39" jbegin="82" ni="1" nj="1" />
+ <domain id="sec01U" ibegin="33" jbegin="62" ni="28" nj="1" />
+ <domain id="sec02U" ibegin="34" jbegin="68" ni="27" nj="1" />
+ <domain id="sec03U" ibegin="29" jbegin="75" ni="18" nj="1" />
+ <domain id="sec04U" ibegin="29" jbegin="80" ni="16" nj="1" />
+ <domain id="sec05U" ibegin="25" jbegin="88" ni="12" nj="1" />
+ <domain id="sec06U" ibegin="25" jbegin="91" ni="7" nj="1" />
+ <domain id="sec07U" ibegin="25" jbegin="92" ni="3" nj="1" />
+ <domain id="sec08U" ibegin="57" jbegin="77" ni="4" nj="1" />
+ <domain id="sec09U" ibegin="61" jbegin="62" ni="1" nj="15" />
+
+ <domain id="sec00SU" ibegin="2" jbegin="2" ni="115" nj="1" />
+ <domain id="sec00NU" ibegin="2" jbegin="104" ni="115" nj="1" />
+ <domain id="sec00WU" ibegin="2" jbegin="2" ni="1" nj="103" />
+ <domain id="sec00EU" ibegin="116" jbegin="2" ni="1" nj="103" />
+ <!-- Eq section -->
+ <domain id="EqU" ibegin="1" jbegin="0000" ni="0000" nj="1" />
+
+ </domain_group>
+
+ <domain_group id="grid_V">
+ <domain id="grid_V" long_name="grid V"/>
+ <!-- My zoom: example of hand defined zoom -->
+ <domain id="moorV" ibegin="39" jbegin="82" ni="1" nj="1" />
+ <domain id="sec01V" ibegin="33" jbegin="62" ni="28" nj="1" />
+ <domain id="sec02V" ibegin="34" jbegin="68" ni="27" nj="1" />
+ <domain id="sec03V" ibegin="29" jbegin="75" ni="18" nj="1" />
+ <domain id="sec04V" ibegin="29" jbegin="80" ni="16" nj="1" />
+ <domain id="sec05V" ibegin="25" jbegin="88" ni="12" nj="1" />
+ <domain id="sec06V" ibegin="25" jbegin="91" ni="7" nj="1" />
+ <domain id="sec07V" ibegin="25" jbegin="92" ni="3" nj="1" />
+ <domain id="sec08V" ibegin="57" jbegin="77" ni="4" nj="1" />
+ <domain id="sec09V" ibegin="61" jbegin="62" ni="1" nj="15" />
+
+ <domain id="sec00SV" ibegin="2" jbegin="2" ni="115" nj="1" />
+ <domain id="sec00NV" ibegin="2" jbegin="104" ni="115" nj="1" />
+ <domain id="sec00WV" ibegin="2" jbegin="2" ni="1" nj="103" />
+ <domain id="sec00EV" ibegin="116" jbegin="2" ni="1" nj="103" />
+ </domain_group>
+
+ <domain_group id="grid_W">
+ <domain id="grid_W" long_name="grid W"/>
+ <!-- My zoom: example of hand defined zoom -->
+ <domain id="moorW" ibegin="39" jbegin="82" ni="1" nj="1" />
+ <domain id="sec01W" ibegin="33" jbegin="62" ni="28" nj="1" />
+ <domain id="sec02W" ibegin="34" jbegin="68" ni="27" nj="1" />
+ <domain id="sec03W" ibegin="29" jbegin="75" ni="18" nj="1" />
+ <domain id="sec04W" ibegin="29" jbegin="80" ni="16" nj="1" />
+ <domain id="sec05W" ibegin="25" jbegin="88" ni="12" nj="1" />
+ <domain id="sec06W" ibegin="25" jbegin="91" ni="7" nj="1" />
+ <domain id="sec07W" ibegin="25" jbegin="92" ni="3" nj="1" />
+ <domain id="sec08W" ibegin="57" jbegin="77" ni="4" nj="1" />
+ <domain id="sec09W" ibegin="61" jbegin="62" ni="1" nj="15" />
+
+ <domain id="sec00SW" ibegin="2" jbegin="2" ni="115" nj="1" />
+ <domain id="sec00NW" ibegin="2" jbegin="104" ni="115" nj="1" />
+ <domain id="sec00WW" ibegin="2" jbegin="2" ni="1" nj="103" />
+ <domain id="sec00EW" ibegin="116" jbegin="2" ni="1" nj="103" />
+ <!-- Eq section -->
+ <domain id="EqW" ibegin="1" jbegin="0000" ni="0000" nj="1" />
+ </domain_group>
+
+ <domain_group id="scalarpoint">
+ <domain id="scalarpoint" long_name="scalar"/>
+ </domain_group>
+
+ <domain_group id="gznl">
+ <domain id="gznl" long_name="gznl"/>
+ <domain id="ptr" domain_ref="gznl" >
+ <zoom_domain id="ptr" ibegin="0000" jbegin="0" ni="1" nj="0000" />
+ </domain>
+ </domain_group>
+
+
+ </domain_definition>
+
diff --git a/EXP_Apr19/field_def_nemo-lim.xml b/EXP_Apr19/field_def_nemo-lim.xml
new file mode 100755
index 0000000..556fe89
--- /dev/null
+++ b/EXP_Apr19/field_def_nemo-lim.xml
@@ -0,0 +1,182 @@
+<?xml version="1.0"?>
+ <!-- $id$ -->
+
+ <!--
+============================================================================================================
+= definition of all existing variables =
+= DO NOT CHANGE =
+============================================================================================================
+ -->
+ <field_definition level="1" prec="4" operation="average" enabled=".TRUE." default_value="1.e20" > <!-- time step automaticaly defined -->
+
+ <field_group id="SBC" grid_ref="grid_T_2D" > <!-- time step automaticaly defined based on nn_fsbc -->
+
+ <!-- LIM2(only) fields -->
+ <field id="qsr_ai_cea" long_name="Air-Ice downward solar heat flux (cell average)" standard_name="surface_downwelling_shortwave_flux_in_air" unit="W/m2" />
+ <field id="qns_ai_cea" long_name="Air-Ice downward non-solar heat flux (cell average)" unit="W/m2" />
+ <field id="qla_ai_cea" long_name="Air-Ice downward Latent heat flux (cell average)" standard_name="surface_downward_latent_heat_flux" unit="W/m2" />
+ <field id="qsr_io_cea" long_name="Ice-Oce downward solar heat flux (cell average)" standard_name="net_downward_shortwave_flux_at_sea_water_surface" unit="W/m2" />
+ <field id="qns_io_cea" long_name="Ice-Oce downward non-solar heat flux (cell average)" unit="W/m2" />
+ <field id="iceprod_cea" long_name="Ice production (cell average)" unit="m/s" />
+ <field id="iiceconc" long_name="Ice concentration" standard_name="sea_ice_area_fraction" unit="1" />
+ <field id="ice_pres" long_name="Ice presence" unit="" />
+ <field id="ist_cea" long_name="Ice surface temperature (cell average)" standard_name="surface_temperature" unit="degC" />
+ <field id="ist_ipa" long_name="Ice surface temperature (ice presence average)" standard_name="surface_temperature" unit="degC" />
+ <field id="u_imasstr" long_name="Sea-ice mass transport along i-axis" standard_name="sea_ice_x_transport" unit="kg/s" />
+ <field id="v_imasstr" long_name="Sea-ice mass transport along j-axis" standard_name="sea_ice_y_transport" unit="kg/s" />
+
+ <!-- LIM3 fields -->
+ <field id="ice_cover" long_name="Ice fraction" standard_name="sea_ice_area_fraction" unit="1" />
+
+ <field id="snowthic_cea" long_name="Snow thickness (cell average)" standard_name="surface_snow_thickness" unit="m" />
+ <field id="icethic_cea" long_name="Ice thickness (cell average)" standard_name="sea_ice_thickness" unit="m" />
+
+ <field id="uice_ipa" long_name="Ice velocity along i-axis at I-point (ice presence average)" standard_name="sea_ice_x_velocity" unit="m/s" />
+ <field id="vice_ipa" long_name="Ice velocity along j-axis at I-point (ice presence average)" standard_name="sea_ice_y_velocity" unit="m/s" />
+ <field id="utau_ice" long_name="Wind stress along i-axis over the ice at i-point" standard_name="surface_downward_x_stress" unit="N/m2" />
+ <field id="vtau_ice" long_name="Wind stress along j-axis over the ice at i-point" standard_name="surface_downward_y_stress" unit="N/m2" />
+
+ <field id="iceconc" long_name="ice concentration" standard_name="sea_ice_area_fraction" unit="%" />
+ <field id="isst" long_name="sea surface temperature" standard_name="sea_surface_temperature" unit="degC" />
+ <field id="isss" long_name="sea surface salinity" standard_name="sea_surface_salinity" unit="1e-3" />
+ <field id="qt_oce" long_name="total flux at ocean surface" standard_name="surface_downward_heat_flux_in_sea_water" unit="W/m2" />
+ <field id="qsr_oce" long_name="solar heat flux at ocean surface" standard_name="net_downward_shortwave_flux_at_sea_water_surface" unit="W/m2" />
+ <field id="qt_ice" long_name="total heat flux at ice surface: sum over categories" standard_name="surface_downward_heat_flux_in_air" unit="W/m2" />
+ <field id="qsr_ice" long_name="solar heat flux at ice surface: sum over categories" standard_name="surface_downwelling_shortwave_flux_in_air" unit="W/m2" />
+ <field id="qns_ice" long_name="non-solar heat flux at ice surface: sum over categories" unit="W/m2" />
+ <field id="qtr_ice" long_name="solar heat flux transmitted through ice: sum over categories" unit="W/m2" />
+ <field id="qemp_ice" long_name="Downward Heat Flux from E-P over ice" unit="W/m2" />
+ <field id="micesalt" long_name="Mean ice salinity" unit="1e-3" />
+ <field id="miceage" long_name="Mean ice age" unit="years" />
+ <field id="alb_ice" long_name="Mean albedo over sea ice" unit="" />
+ <field id="albedo" long_name="Mean albedo over sea ice and ocean" unit="" />
+
+ <field id="iceage_cat" long_name="Ice age for categories" unit="days" grid_ref="grid_T_3D_ncatice" />
+ <field id="iceconc_cat" long_name="Ice concentration for categories" unit="%" grid_ref="grid_T_3D_ncatice" />
+ <field id="icethic_cat" long_name="Ice thickness for categories" unit="m" grid_ref="grid_T_3D_ncatice" />
+ <field id="snowthic_cat" long_name="Snow thicknessi for categories" unit="m" grid_ref="grid_T_3D_ncatice" />
+ <field id="salinity_cat" long_name="Sea-Ice Bulk salinity for categories" unit="g/kg" grid_ref="grid_T_3D_ncatice" />
+ <field id="brinevol_cat" long_name="Brine volume for categories" unit="%" grid_ref="grid_T_3D_ncatice" />
+ <field id="icetemp_cat" long_name="Ice temperature for categories" unit="degC" grid_ref="grid_T_3D_ncatice" />
+ <field id="snwtemp_cat" long_name="Snow temperature for categories" unit="degC" grid_ref="grid_T_3D_ncatice" />
+
+ <field id="micet" long_name="Mean ice temperature" unit="degC" />
+ <field id="icehc" long_name="ice total heat content" unit="10^9J" />
+ <field id="isnowhc" long_name="snow total heat content" unit="10^9J" />
+ <field id="icest" long_name="ice surface temperature" unit="degC" />
+ <field id="ibrinv" long_name="brine volume" unit="%" />
+ <field id="icecolf" long_name="frazil ice collection thickness" unit="m" />
+ <field id="icestr" long_name="ice strength" unit="N/m" />
+ <field id="icevel" long_name="ice velocity" unit="m/s" />
+ <field id="idive" long_name="divergence" unit="1e-8s-1" />
+ <field id="ishear" long_name="shear" unit="1e-8s-1" />
+ <field id="icevolu" long_name="ice volume" unit="m" />
+ <field id="snowvol" long_name="snow volume" unit="m" />
+ <field id="tau_icebfr" long_name="ice friction on ocean bottom for landfast ice" unit="N/2" />
+
+ <field id="icetrp" long_name="ice volume transport" unit="m/day" />
+ <field id="snwtrp" long_name="snw volume transport" unit="m/day" />
+ <field id="saltrp" long_name="salt content transport" unit="1e-3*kg/m2/day" />
+ <field id="deitrp" long_name="advected ice enthalpy" unit="W/m2" />
+ <field id="destrp" long_name="advected snw enthalpy" unit="W/m2" />
+
+ <field id="sfxbri" long_name="brine salt flux" unit="1e-3*kg/m2/day" />
+ <field id="sfxdyn" long_name="salt flux from ridging rafting" unit="1e-3*kg/m2/day" />
+ <field id="sfxres" long_name="salt flux from lipupdate (resultant)" unit="1e-3*kg/m2/day" />
+ <field id="sfxbog" long_name="salt flux from bot growth" unit="1e-3*kg/m2/day" />
+ <field id="sfxbom" long_name="salt flux from bot melt" unit="1e-3*kg/m2/day" />
+ <field id="sfxsum" long_name="salt flux from surf melt" unit="1e-3*kg/m2/day" />
+ <field id="sfxlam" long_name="salt flux from lateral melt" unit="1e-3*kg/m2/day" />
+ <field id="sfxsni" long_name="salt flux from snow-ice formation" unit="1e-3*kg/m2/day" />
+ <field id="sfxopw" long_name="salt flux from open water ice formation" unit="1e-3*kg/m2/day" />
+ <field id="sfxsub" long_name="salt flux from sublimation" unit="1e-3*kg/m2/day" />
+ <field id="sfx" long_name="salt flux total" unit="1e-3*kg/m2/day" />
+
+ <field id="vfxbog" long_name="daily bottom thermo ice prod." unit="m/day" />
+ <field id="vfxdyn" long_name="daily dynamic ice prod." unit="m/day" />
+ <field id="vfxopw" long_name="daily lateral thermo ice prod." unit="m/day" />
+ <field id="vfxsni" long_name="daily snowice ice prod." unit="m/day" />
+ <field id="vfxsum" long_name="surface melt" unit="m/day" />
+ <field id="vfxlam" long_name="lateral melt" unit="m/day" />
+ <field id="vfxbom" long_name="bottom melt" unit="m/day" />
+ <field id="vfxres" long_name="daily resultant ice prod./melting from limupdate" unit="m/day" />
+ <field id="vfxice" long_name="ice melt/growth" unit="m/day" />
+ <field id="vfxsnw" long_name="snw melt/growth" unit="m/day" />
+ <field id="vfxsub" long_name="snw sublimation" unit="m/day" />
+ <field id="vfxsub_err" long_name="excess of snw sublimation sent to ocean" unit="m/day" />
+ <field id="vfxspr" long_name="snw precipitation on ice" unit="m/day" />
+ <field id="vfxthin" long_name="daily thermo ice prod. for thin ice(20cm) + open water" unit="m/day" />
+
+ <field id="afxtot" long_name="area tendency (total)" unit="day-1" />
+ <field id="afxdyn" long_name="area tendency (dynamics)" unit="day-1" />
+ <field id="afxthd" long_name="area tendency (thermo)" unit="day-1" />
+
+ <field id="hfxsum" long_name="heat fluxes causing surface ice melt" unit="W/m2" />
+ <field id="hfxbom" long_name="heat fluxes causing bottom ice melt" unit="W/m2" />
+ <field id="hfxbog" long_name="heat fluxes causing bottom ice growth" unit="W/m2" />
+ <field id="hfxdif" long_name="heat fluxes causing ice temperature change" unit="W/m2" />
+ <field id="hfxopw" long_name="heat fluxes causing open water ice formation" unit="W/m2" />
+ <field id="hfxsnw" long_name="heat fluxes causing snow melt" unit="W/m2" />
+ <field id="hfxerr" long_name="heat fluxes error after heat diffusion" unit="W/m2" />
+ <field id="hfxerr_rem" long_name="heat fluxes error after remapping" unit="W/m2" />
+ <field id="hfxout" long_name="total heat fluxes received by the ocean" unit="W/m2" />
+ <field id="hfxin" long_name="total heat fluxes at the ice/ocean surface" unit="W/m2" />
+
+ <!-- heat flux associated with mass exchange -->
+ <field id="hfxthd" long_name="heat fluxes from ice-ocean mass exchange during thermo" unit="W/m2" />
+ <field id="hfxdyn" long_name="heat fluxes from ice-ocean mass exchange during dynamic" unit="W/m2" />
+ <field id="hfxres" long_name="heat fluxes from ice-ocean mass exchange during resultant" unit="W/m2" />
+ <field id="hfxsub" long_name="heat fluxes from ice-atm. mass exchange during sublimation" unit="W/m2" />
+ <field id="hfxspr" long_name="heat fluxes from ice-atm. mass exchange during snow precip" unit="W/m2" />
+
+ <!-- diags -->
+ <field id="hfxdhc" long_name="Heat content variation in snow and ice" unit="W/m2" />
+ <field id="hfxtur" long_name="turbulent heat flux at the ice base" unit="W/m2" />
+
+ <!-- sbcssm variables -->
+ <field id="sst_m" unit="degC" />
+ <field id="sss_m" unit="psu" />
+ <field id="ssu_m" unit="m/s" />
+ <field id="ssv_m" unit="m/s" />
+ <field id="ssh_m" unit="m" />
+ <field id="e3t_m" unit="m" />
+ <field id="frq_m" unit="-" />
+
+ </field_group>
+
+ <!-- LIM3 scalar variables -->
+ <field_group id="SBC_scalar" grid_ref="grid_T_2D" >
+ <!-- available with ln_limdiaout -->
+ <field id="ibgfrcvoltop" long_name="global mean ice/snow forcing at interface ice/snow-atm (volume equivalent ocean volume)" unit="km3" />
+ <field id="ibgfrcvolbot" long_name="global mean ice/snow forcing at interface ice/snow-ocean (volume equivalent ocean volume)" unit="km3" />
+ <field id="ibgfrctemtop" long_name="global mean heat on top of ice/snw/ocean-atm " unit="1e20J" />
+ <field id="ibgfrctembot" long_name="global mean heat below ice (on top of ocean) " unit="1e20J" />
+ <field id="ibgfrcsal" long_name="global mean ice/snow forcing (salt equivalent ocean volume)" unit="pss*km3" />
+ <field id="ibgfrchfxtop" long_name="global mean heat flux on top of ice/snw/ocean-atm " unit="W/m2" />
+ <field id="ibgfrchfxbot" long_name="global mean heat flux below ice (on top of ocean) " unit="W/m2" />
+
+ <field id="ibgvolume" long_name="drift in ice/snow volume (equivalent ocean volume)" unit="km3" />
+ <field id="ibgsaltco" long_name="drift in ice salt content (equivalent ocean volume)" unit="pss*km3" />
+ <field id="ibgheatco" long_name="drift in ice/snow heat content" unit="1e20J" />
+ <field id="ibgheatfx" long_name="drift in ice/snow heat flux" unit="W/m2" />
+
+ <field id="ibgvol_tot" long_name="global mean ice volume" unit="km3" />
+ <field id="sbgvol_tot" long_name="global mean snow volume" unit="km3" />
+ <field id="ibgarea_tot" long_name="global mean ice area" unit="km2" />
+ <field id="ibgsalt_tot" long_name="global mean ice salt content" unit="1e-3*km3" />
+ <field id="ibgheat_tot" long_name="global mean ice heat content" unit="1e20J" />
+ <field id="sbgheat_tot" long_name="global mean snow heat content" unit="1e20J" />
+ </field_group>
+
+ <!--
+============================================================================================================
+ -->
+ <!-- output variables for my configuration (example) -->
+
+ <field_group id="myvarICE" >
+ <field field_ref="icethic_cea" name="sithic" long_name="sea_ice_thickness" />
+ <field field_ref="icevolu" name="sivolu" />
+ <field field_ref="iceconc" name="siconc" />
+ </field_group>
+
+ </field_definition>
diff --git a/EXP_Apr19/field_def_nemo-opa.xml b/EXP_Apr19/field_def_nemo-opa.xml
new file mode 100755
index 0000000..65a6e78
--- /dev/null
+++ b/EXP_Apr19/field_def_nemo-opa.xml
@@ -0,0 +1,1107 @@
+<?xml version="1.0"?>
+ <!-- $id$ -->
+
+ <!--
+============================================================================================================
+= definition of all existing variables =
+= DO NOT CHANGE =
+============================================================================================================
+ -->
+ <field_definition level="1" prec="4" operation="average" enabled=".TRUE." default_value="1.e20" > <!-- time step automaticaly defined -->
+
+ <!--
+============================================================================================================
+ Physical ocean model variables
+============================================================================================================
+ -->
+
+ <!-- T grid -->
+
+ <field_group id="grid_T" grid_ref="grid_T_2D" >
+ <field id="e3t" long_name="T-cell thickness" standard_name="cell_thickness" unit="m" grid_ref="grid_T_3D"/>
+ <field id="e3t_surf" long_name="T-cell thickness" field_ref="e3t" standard_name="cell_thickness" unit="m" grid_ref="grid_T_SFC"/>
+ <field id="e3t_0" long_name="Initial T-cell thickness" standard_name="ref_cell_thickness" unit="m" grid_ref="grid_T_3D"/>
+
+ <field id="toce" long_name="temperature" standard_name="sea_water_potential_temperature" unit="degC" grid_ref="grid_T_3D"/>
+ <field id="toce_e3t" long_name="temperature (thickness weighted)" unit="degC" grid_ref="grid_T_3D" > toce * e3t </field >
+ <field id="soce" long_name="salinity" standard_name="sea_water_practical_salinity" unit="1e-3" grid_ref="grid_T_3D"/>
+ <field id="soce_e3t" long_name="salinity (thickness weighted)" unit="1e-3" grid_ref="grid_T_3D" > soce * e3t </field >
+
+ <!-- t-eddy viscosity coefficients (ldfdyn) -->
+ <field id="ahmt_2d" long_name=" surface t-eddy viscosity coefficient" unit="m2/s or m4/s" />
+ <field id="ahmt_3d" long_name=" 3D t-eddy viscosity coefficient" unit="m2/s or m4/s" grid_ref="grid_T_3D"/>
+
+ <field id="sst" long_name="sea surface temperature" standard_name="sea_surface_temperature" unit="degC" />
+ <field id="sst2" long_name="square of sea surface temperature" standard_name="square_of_sea_surface_temperature" unit="degC2" > sst * sst </field >
+ <field id="sstmax" long_name="max of sea surface temperature" field_ref="sst" operation="maximum" />
+ <field id="sstmin" long_name="min of sea surface temperature" field_ref="sst" operation="minimum" />
+ <field id="sstgrad" long_name="module of sst gradient" unit="degC/m" />
+ <field id="sstgrad2" long_name="square of module of sst gradient" unit="degC2/m2" />
+ <field id="sbt" long_name="sea bottom temperature" unit="degC" />
+ <field id="tosmint" long_name="vertical integral of temperature times density" standard_name="integral_wrt_depth_of_product_of_density_and_potential_temperature" unit="(kg m2) degree_C" />
+ <field id="sst_wl" long_name="Delta SST of warm layer" unit="degC" />
+ <field id="sst_cs" long_name="Delta SST of cool skin" unit="degC" />
+ <field id="temp_3m" long_name="temperature at 3m" unit="degC" />
+
+ <field id="sss" long_name="sea surface salinity" standard_name="sea_surface_salinity" unit="1e-3" />
+ <field id="sss2" long_name="square of sea surface salinity" unit="1e-6" > sss * sss </field >
+ <field id="sssmax" long_name="max of sea surface salinity" field_ref="sss" operation="maximum" />
+ <field id="sssmin" long_name="min of sea surface salinity" field_ref="sss" operation="minimum" />
+ <field id="sbs" long_name="sea bottom salinity" unit="0.001" />
+ <field id="somint" long_name="vertical integral of salinity times density" standard_name="integral_wrt_depth_of_product_of_density_and_salinity" unit="(kg m2) x (1e-3)" />
+
+ <field id="taubot" long_name="bottom stress module" unit="N/m2" />
+
+ <field id="ssh" long_name="sea surface height" standard_name="sea_surface_height_above_geoid" unit="m" />
+ <field id="ssh2" long_name="square of sea surface height" standard_name="square_of_sea_surface_height_above_geoid" unit="m2" > ssh * ssh </field >
+ <field id="wetdep" long_name="wet depth" standard_name="wet_depth" unit="m" />
+ <field id="sshmax" long_name="max of sea surface height" field_ref="ssh" operation="maximum" />
+
+ <field id="mldkz5" long_name="Turbocline depth (Kz = 5e-4)" standard_name="ocean_mixed_layer_thickness_defined_by_vertical_tracer_diffusivity" unit="m" />
+ <field id="mldr10_1" long_name="Mixed Layer Depth (dsigma = 0.01 wrt 10m)" standard_name="ocean_mixed_layer_thickness_defined_by_sigma_theta" unit="m" />
+ <field id="mldr10_1max" long_name="Max of Mixed Layer Depth (dsigma = 0.01 wrt 10m)" field_ref="mldr10_1" operation="maximum" />
+ <field id="mldr10_1min" long_name="Min of Mixed Layer Depth (dsigma = 0.01 wrt 10m)" field_ref="mldr10_1" operation="minimum" />
+ <field id="heatc" long_name="Heat content vertically integrated" standard_name="integral_of_sea_water_potential_temperature_wrt_depth_expressed_as_heat_content" unit="J/m2" />
+ <field id="saltc" long_name="Salt content vertically integrated" unit="1e-3*kg/m2" />
+
+ <!-- EOS -->
+ <field id="alpha" long_name="thermal expansion" unit="degC-1" grid_ref="grid_T_3D" />
+ <field id="beta" long_name="haline contraction" unit="1e3" grid_ref="grid_T_3D" />
+ <field id="bn2" long_name="squared Brunt-Vaisala frequency" unit="s-1" grid_ref="grid_T_3D" />
+ <field id="rhop" long_name="potential density (sigma0)" standard_name="sea_water_sigma_theta" unit="kg/m3" grid_ref="grid_T_3D" />
+
+ <!-- Energy - horizontal divergence -->
+ <field id="eken" long_name="kinetic energy" standard_name="specific_kinetic_energy_of_sea_water" unit="m2/s2" grid_ref="grid_T_3D" />
+ <field id="hdiv" long_name="horizontal divergence" unit="s-1" grid_ref="grid_T_3D" />
+
+ <!-- variables available with MLE -->
+ <field id="Lf_NHpf" long_name="MLE: Lf = N H / f" unit="m" />
+
+ <!-- next variables available with key_diahth -->
+ <field id="mlddzt" long_name="Thermocline Depth (depth of max dT/dz)" standard_name="depth_at_maximum_upward_derivative_of_sea_water_potential_temperature" unit="m" />
+ <field id="mldr10_3" long_name="Mixed Layer Depth (dsigma = 0.03 wrt 10m)" standard_name="ocean_mixed_layer_thickness_defined_by_sigma_theta" unit="m" />
+ <field id="mldr0_1" long_name="Mixed Layer Depth (dsigma = 0.01 wrt sfc)" standard_name="ocean_mixed_layer_thickness_defined_by_sigma_theta" unit="m" />
+ <field id="mldr0_3" long_name="Mixed Layer Depth (dsigma = 0.03 wrt sfc)" standard_name="ocean_mixed_layer_thickness_defined_by_sigma_theta" unit="m" />
+ <field id="mld_dt02" long_name="Mixed Layer Depth (|dT| = 0.2 wrt 10m)" standard_name="ocean_mixed_layer_thickness_defined_by_temperature" unit="m" />
+ <field id="topthdep" long_name="Top of Thermocline Depth (dT = -0.2 wrt 10m)" standard_name="ocean_mixed_layer_thickness_defined_by_temperature" unit="m" />
+ <field id="pycndep" long_name="Pycnocline Depth (dsigma[dT=-0.2] wrt 10m)" standard_name="ocean_mixed_layer_thickness_defined_by_sigma_theta" unit="m" />
+ <field id="BLT" long_name="Barrier Layer Thickness" unit="m" > topthdep - pycndep </field>
+ <field id="tinv" long_name="Max of vertical invertion of temperature" unit="degC" />
+ <field id="depti" long_name="Depth of max. vert. inv. of temperature" unit="m" />
+ <field id="20d" long_name="Depth of 20C isotherm" standard_name="depth_of_isosurface_of_sea_water_potential_temperature" unit="m" axis_ref="iax_20C" />
+ <field id="28d" long_name="Depth of 28C isotherm" standard_name="depth_of_isosurface_of_sea_water_potential_temperature" unit="m" axis_ref="iax_28C" />
+ <field id="hc300" long_name="Heat content 0-300m" standard_name="integral_of_sea_water_potential_temperature_wrt_depth_expressed_as_heat_content" unit="J/m2" />
+
+ <!-- variables available with diaar5 -->
+ <field id="botpres" long_name="Sea Water Pressure at Sea Floor" standard_name="sea_water_pressure_at_sea_floor" unit="dbar" />
+ <field id="sshdyn" long_name="dynamic sea surface height" standard_name="dynamic_sea_surface_height_above_geoid" unit="m" />
+ <field id="sshdyn2" long_name="square of dynamic sea surface height" standard_name="dynamic_sea_surface_height_above_geoid_squared" unit="m2" > sshdyn * sshdyn </field>
+ <field id="tnpeo" long_name="Tendency of ocean potential energy content" unit="W/m2" />
+
+ <!-- variables available ln_linssh=.FALSE. -->
+ <field id="tpt_dep" long_name="T-point depth" standard_name="depth_below_geoid" unit="m" grid_ref="grid_T_3D" />
+ <field id="e3tdef" long_name="T-cell thickness deformation" unit="%" grid_ref="grid_T_3D" />
+ </field_group>
+
+ <!-- Tides -->
+
+ <field_group id="Tides_T" grid_ref="grid_T_2D" operation="once" >
+ <!-- tidal composante -->
+ <field id="M2x" long_name="M2 Elevation harmonic real part " unit="m" />
+ <field id="M2y" long_name="M2 Elevation harmonic imaginary part" unit="m" />
+ <field id="S2x" long_name="S2 Elevation harmonic real part " unit="m" />
+ <field id="S2y" long_name="S2 Elevation harmonic imaginary part" unit="m" />
+ <field id="N2x" long_name="N2 Elevation harmonic real part " unit="m" />
+ <field id="N2y" long_name="N2 Elevation harmonic imaginary part" unit="m" />
+ <field id="K1x" long_name="K1 Elevation harmonic real part " unit="m" />
+ <field id="K1y" long_name="K1 Elevation harmonic imaginary part" unit="m" />
+ <field id="O1x" long_name="O1 Elevation harmonic real part " unit="m" />
+ <field id="O1y" long_name="O1 Elevation harmonic imaginary part" unit="m" />
+ <field id="Q1x" long_name="Q1 Elevation harmonic real part " unit="m" />
+ <field id="Q1y" long_name="Q1 Elevation harmonic imaginary part" unit="m" />
+ <field id="M4x" long_name="M4 Elevation harmonic real part " unit="m" />
+ <field id="M4y" long_name="M4 Elevation harmonic imaginary part" unit="m" />
+ <field id="K2x" long_name="K2 Elevation harmonic real part " unit="m" />
+ <field id="K2y" long_name="K2 Elevation harmonic imaginary part" unit="m" />
+ <field id="P1x" long_name="P1 Elevation harmonic real part " unit="m" />
+ <field id="P1y" long_name="P1 Elevation harmonic imaginary part" unit="m" />
+ <field id="Mfx" long_name="Mf Elevation harmonic real part " unit="m" />
+ <field id="Mfy" long_name="Mf Elevation harmonic imaginary part" unit="m" />
+ <field id="Mmx" long_name="Mm Elevation harmonic real part " unit="m" />
+ <field id="Mmy" long_name="Mm Elevation harmonic imaginary part" unit="m" />
+
+ <field id="M2amp" long_name="M2 Elevation harmonic Amplitude" unit="m" />
+ <field id="M2phase" long_name="M2 Elevation harmonic Phase" unit="degree" />
+
+ <field id="S2amp" long_name="S2 Elevation harmonic Amplitude" unit="m" />
+ <field id="S2phase" long_name="S2 Elevation harmonic Phase" unit="degree" />
+
+ <field id="N2amp" long_name="N2 Elevation harmonic Amplitude" unit="m" />
+ <field id="N2phase" long_name="N2 Elevation harmonic Phase" unit="degree" />
+
+ <field id="K1amp" long_name="K1 Elevation harmonic Amplitude" unit="m" />
+ <field id="K1phase" long_name="K1 Elevation harmonic Phase" unit="degree" />
+
+ <field id="O1amp" long_name="O1 Elevation harmonic Amplitude" unit="m" />
+ <field id="O1phase" long_name="O1 Elevation harmonic Phase" unit="degree" />
+
+ <field id="Q1amp" long_name="Q1 Elevation harmonic Amplitude" unit="m" />
+ <field id="Q1phase" long_name="Q1 Elevation harmonic Phase" unit="degree" />
+
+ <field id="M4amp" long_name="M4 Elevation harmonic Amplitude" unit="m" />
+ <field id="M4phase" long_name="M4 Elevation harmonic Phase" unit="degree" />
+
+ <field id="MS4amp" long_name="MS4 Elevation harmonic Amplitude" unit="m" />
+ <field id="MS4phase" long_name="MS4 Elevation harmonic Phase" unit="degree" />
+
+ <field id="MN4amp" long_name="MN4 Elevation harmonic Amplitude" unit="m" />
+ <field id="MN4phase" long_name="MN4 Elevation harmonic Phase" unit="degree" />
+
+ <field id="K2amp" long_name="K2 Elevation harmonic Amplitude" unit="m" />
+ <field id="K2phase" long_name="K2 Elevation harmonic Phase" unit="degree" />
+
+ <field id="P1amp" long_name="P1 Elevation harmonic Amplitude" unit="m" />
+ <field id="P1phase" long_name="P1 Elevation harmonic Phase" unit="degree" />
+
+ <field id="Mfamp" long_name="Mf Elevation harmonic Amplitude" unit="m" />
+ <field id="Mfphase" long_name="Mf Elevation harmonic Phase" unit="degree" />
+
+ <field id="Mmamp" long_name="Mm Elevation harmonic Amplitude" unit="m" />
+ <field id="Mmphase" long_name="Mm Elevation harmonic Phase" unit="degree" />
+
+ <field id="T2amp" long_name="T2 Elevation harmonic Amplitude" unit="m" />
+ <field id="T2phase" long_name="T2 Elevation harmonic Phase" unit="degree" />
+
+ <field id="L2amp" long_name="L2 Elevation harmonic Amplitude" unit="m" />
+ <field id="L2phase" long_name="L2 Elevation harmonic Phase" unit="degree" />
+
+ <field id="S1amp" long_name="S1 Elevation harmonic Amplitude" unit="m" />
+ <field id="S1phase" long_name="S1 Elevation harmonic Phase" unit="degree" />
+
+ <field id="2N2amp" long_name="2N2 Elevation harmonic Amplitude" unit="m" />
+ <field id="2N2phase" long_name="2N2 Elevation harmonic Phase" unit="degree" />
+
+ <field id="MU2amp" long_name="MU2 Elevation harmonic Amplitude" unit="m" />
+ <field id="MU2phase" long_name="MU2 Elevation harmonic Phase" unit="degree" />
+
+ <field id="NU2amp" long_name="NU2 Elevation harmonic Amplitude" unit="m" />
+ <field id="NU2phase" long_name="NU2 Elevation harmonic Phase" unit="degree" />
+
+ </field_group>
+
+ <field_group id="Tides_U" grid_ref="grid_U_2D" operation="once" >
+ <field id="M2x_u" long_name="M2 current barotrope along i-axis harmonic real part " unit="m/s" />
+ <field id="M2y_u" long_name="M2 current barotrope along i-axis harmonic imaginary part " unit="m/s" />
+ <field id="S2x_u" long_name="S2 current barotrope along i-axis harmonic real part " unit="m/s" />
+ <field id="S2y_u" long_name="S2 current barotrope along i-axis harmonic imaginary part " unit="m/s" />
+ <field id="N2x_u" long_name="N2 current barotrope along i-axis harmonic real part " unit="m/s" />
+ <field id="N2y_u" long_name="N2 current barotrope along i-axis harmonic imaginary part " unit="m/s" />
+ <field id="K1x_u" long_name="K1 current barotrope along i-axis harmonic real part " unit="m/s" />
+ <field id="K1y_u" long_name="K1 current barotrope along i-axis harmonic imaginary part " unit="m/s" />
+ <field id="O1x_u" long_name="O1 current barotrope along i-axis harmonic real part " unit="m/s" />
+ <field id="O1y_u" long_name="O1 current barotrope along i-axis harmonic imaginary part " unit="m/s" />
+ <field id="Q1x_u" long_name="Q1 current barotrope along i-axis harmonic real part " unit="m/s" />
+ <field id="Q1y_u" long_name="Q1 current barotrope along i-axis harmonic imaginary part " unit="m/s" />
+ <field id="M4x_u" long_name="M4 current barotrope along i-axis harmonic real part " unit="m/s" />
+ <field id="M4y_u" long_name="M4 current barotrope along i-axis harmonic imaginary part " unit="m/s" />
+ <field id="K2x_u" long_name="K2 current barotrope along i-axis harmonic real part " unit="m/s" />
+ <field id="K2y_u" long_name="K2 current barotrope along i-axis harmonic imaginary part " unit="m/s" />
+ <field id="P1x_u" long_name="P1 current barotrope along i-axis harmonic real part " unit="m/s" />
+ <field id="P1y_u" long_name="P1 current barotrope along i-axis harmonic imaginary part " unit="m/s" />
+ <field id="Mfx_u" long_name="Mf current barotrope along i-axis harmonic real part " unit="m/s" />
+ <field id="Mfy_u" long_name="Mf current barotrope along i-axis harmonic imaginary part " unit="m/s" />
+ <field id="Mmx_u" long_name="Mm current barotrope along i-axis harmonic real part " unit="m/s" />
+ <field id="Mmy_u" long_name="Mm current barotrope along i-axis harmonic imaginary part " unit="m/s" />
+
+ <field id="M2amp_u2D" long_name="M2 U barotropic harmonic Amplitude" unit="m/s" />
+ <field id="M2phase_u2D" long_name="M2 U barotropic harmonic Phase" unit="degree" />
+
+ <field id="S2amp_u2D" long_name="S2 U barotropic harmonic Amplitude" unit="m/s" />
+ <field id="S2phase_u2D" long_name="S2 U barotropic harmonic Phase" unit="degree" />
+
+ <field id="N2amp_u2D" long_name="N2 U barotropic harmonic Amplitude" unit="m/s" />
+ <field id="N2phase_u2D" long_name="N2 U barotropic harmonic Phase" unit="degree" />
+
+ <field id="K1amp_u2D" long_name="K1 U barotropic harmonic Amplitude" unit="m/s" />
+ <field id="K1phase_u2D" long_name="K1 U barotropic harmonic Phase" unit="degree" />
+
+ <field id="O1amp_u2D" long_name="O1 U barotropic harmonic Amplitude" unit="m/s" />
+ <field id="O1phase_u2D" long_name="O1 U barotropic harmonic Phase" unit="degree" />
+
+ <field id="Q1amp_u2D" long_name="Q1 U barotropic harmonic Amplitude" unit="m/s" />
+ <field id="Q1phase_u2D" long_name="Q1 U barotropic harmonic Phase" unit="degree" />
+
+ <field id="M4amp_u2D" long_name="M4 U barotropic harmonic Amplitude" unit="m/s" />
+ <field id="M4phase_u2D" long_name="M4 U barotropic harmonic Phase" unit="degree" />
+
+ <field id="MS4amp_u2D" long_name="MS4 U barotropic harmonic Amplitude" unit="m/s" />
+ <field id="MS4phase_u2D" long_name="MS4 U barotropic harmonic Phase" unit="degree" />
+
+ <field id="MN4amp_u2D" long_name="MN4 U barotropic harmonic Amplitude" unit="m/s" />
+ <field id="MN4phase_u2D" long_name="MN4 U barotropic harmonic Phase" unit="degree" />
+
+ <field id="K2amp_u2D" long_name="K2 U barotropic harmonic Amplitude" unit="m/s" />
+ <field id="K2phase_u2D" long_name="K2 U barotropic harmonic Phase" unit="degree" />
+
+ <field id="P1amp_u2D" long_name="P1 U barotropic harmonic Amplitude" unit="m/s" />
+ <field id="P1phase_u2D" long_name="P1 U barotropic harmonic Phase" unit="degree" />
+
+ <field id="Mfamp_u2D" long_name="Mf U barotropic harmonic Amplitude" unit="m/s" />
+ <field id="Mfphase_u2D" long_name="Mf U barotropic harmonic Phase" unit="degree" />
+
+ <field id="Mmamp_u2D" long_name="Mm U barotropic harmonic Amplitude" unit="m/s" />
+ <field id="Mmphase_u2D" long_name="Mm U barotropic harmonic Phase" unit="degree" />
+ <field id="T2amp_u2D" long_name="T2 U barotropic harmonic Amplitude" unit="m/s" />
+
+ <field id="T2phase_u2D" long_name="T2 U barotropic harmonic Phase" unit="degree" />
+
+ <field id="L2amp_u2D" long_name="L2 U barotropic harmonic Amplitude" unit="m/s" />
+ <field id="L2phase_u2D" long_name="L2 U barotropic harmonic Phase" unit="degree" />
+
+ <field id="S1amp_u2D" long_name="S1 U barotropic harmonic Amplitude" unit="m/s" />
+ <field id="S1phase_u2D" long_name="S1 U barotropic harmonic Phase" unit="degree" />
+
+ <field id="2N2amp_u2D" long_name="2N2 U barotropic harmonic Amplitude" unit="m/s" />
+ <field id="2N2phase_u2D" long_name="2N2 U barotropic harmonic Phase" unit="degree" />
+
+ <field id="MU2amp_u2D" long_name="MU2 U barotropic harmonic Amplitude" unit="m/s" />
+ <field id="MU2phase_u2D" long_name="MU2 U barotropic harmonic Phase" unit="degree" />
+
+ <field id="NU2amp_u2D" long_name="NU2 U barotropic harmonic Amplitude" unit="m/s" />
+ <field id="NU2phase_u2D" long_name="NU2 U barotropic harmonic Phase" unit="degree" />
+
+ </field_group>
+
+ <field_group id="Tides_V" grid_ref="grid_V_2D" operation="once" >
+ <field id="M2x_v" long_name="M2 current barotrope along j-axis harmonic real part " unit="m/s" />
+ <field id="M2y_v" long_name="M2 current barotrope along j-axis harmonic imaginary part " unit="m/s" />
+ <field id="S2x_v" long_name="S2 current barotrope along j-axis harmonic real part " unit="m/s" />
+ <field id="S2y_v" long_name="S2 current barotrope along j-axis harmonic imaginary part " unit="m/s" />
+ <field id="N2x_v" long_name="N2 current barotrope along j-axis harmonic real part " unit="m/s" />
+ <field id="N2y_v" long_name="N2 current barotrope along j-axis harmonic imaginary part " unit="m/s" />
+ <field id="K1x_v" long_name="K1 current barotrope along j-axis harmonic real part " unit="m/s" />
+ <field id="K1y_v" long_name="K1 current barotrope along j-axis harmonic imaginary part " unit="m/s" />
+ <field id="O1x_v" long_name="O1 current barotrope along j-axis harmonic real part " unit="m/s" />
+ <field id="O1y_v" long_name="O1 current barotrope along j-axis harmonic imaginary part " unit="m/s" />
+ <field id="Q1x_v" long_name="Q1 current barotrope along j-axis harmonic real part " unit="m/s" />
+ <field id="Q1y_v" long_name="Q1 current barotrope along j-axis harmonic imaginary part " unit="m/s" />
+ <field id="M4x_v" long_name="M4 current barotrope along j-axis harmonic real part " unit="m/s" />
+ <field id="M4y_v" long_name="M4 current barotrope along j-axis harmonic imaginary part " unit="m/s" />
+ <field id="K2x_v" long_name="K2 current barotrope along j-axis harmonic real part " unit="m/s" />
+ <field id="K2y_v" long_name="K2 current barotrope along j-axis harmonic imaginary part " unit="m/s" />
+ <field id="P1x_v" long_name="P1 current barotrope along j-axis harmonic real part " unit="m/s" />
+ <field id="P1y_v" long_name="P1 current barotrope along j-axis harmonic imaginary part " unit="m/s" />
+ <field id="Mfx_v" long_name="Mf current barotrope along j-axis harmonic real part " unit="m/s" />
+ <field id="Mfy_v" long_name="Mf current barotrope along j-axis harmonic imaginary part " unit="m/s" />
+ <field id="Mmx_v" long_name="Mm current barotrope along j-axis harmonic real part " unit="m/s" />
+ <field id="Mmy_v" long_name="Mm current barotrope along j-axis harmonic imaginary part " unit="m/s" />
+
+ <field id="M2amp_v2D" long_name="M2 V barotropic harmonic Amplitude" unit="m/s" />
+ <field id="M2phase_v2D" long_name="M2 V barotropic harmonic Phase" unit="degree" />
+
+ <field id="S2amp_v2D" long_name="S2 V barotropic harmonic Amplitude" unit="m/s" />
+ <field id="S2phase_v2D" long_name="S2 V barotropic harmonic Phase" unit="degree" />
+
+ <field id="N2amp_v2D" long_name="N2 V barotropic harmonic Amplitude" unit="m/s" />
+ <field id="N2phase_v2D" long_name="N2 V barotropic harmonic Phase" unit="degree" />
+
+ <field id="K1amp_v2D" long_name="K1 V barotropic harmonic Amplitude" unit="m/s" />
+ <field id="K1phase_v2D" long_name="K1 V barotropic harmonic Phase" unit="degree" />
+
+ <field id="O1amp_v2D" long_name="O1 V barotropic harmonic Amplitude" unit="m/s" />
+ <field id="O1phase_v2D" long_name="O1 V barotropic harmonic Phase" unit="degree" />
+
+ <field id="Q1amp_v2D" long_name="Q1 V barotropic harmonic Amplitude" unit="m/s" />
+ <field id="Q1phase_v2D" long_name="Q1 V barotropic harmonic Phase" unit="degree" />
+
+ <field id="M4amp_v2D" long_name="M4 V barotropic harmonic Amplitude" unit="m/s" />
+ <field id="M4phase_v2D" long_name="M4 V barotropic harmonic Phase" unit="degree" />
+
+ <field id="MS4amp_v2D" long_name="MS4 V barotropic harmonic Amplitude" unit="m/s" />
+ <field id="MS4phase_v2D" long_name="MS4 V barotropic harmonic Phase" unit="degree" />
+
+ <field id="MN4amp_v2D" long_name="MN4 V barotropic harmonic Amplitude" unit="m/s" />
+ <field id="MN4phase_v2D" long_name="MN4 V barotropic harmonic Phase" unit="degree" />
+
+ <field id="K2amp_v2D" long_name="K2 V barotropic harmonic Amplitude" unit="m/s" />
+ <field id="K2phase_v2D" long_name="K2 V barotropic harmonic Phase" unit="degree" />
+
+ <field id="P1amp_v2D" long_name="P1 V barotropic harmonic Amplitude" unit="m/s" />
+ <field id="P1phase_v2D" long_name="P1 V barotropic harmonic Phase" unit="degree" />
+
+ <field id="Mfamp_v2D" long_name="Mf V barotropic harmonic Amplitude" unit="m/s" />
+ <field id="Mfphase_v2D" long_name="Mf V barotropic harmonic Phase" unit="degree" />
+
+ <field id="Mmamp_v2D" long_name="Mm V barotropic harmonic Amplitude" unit="m/s" />
+ <field id="Mmphase_v2D" long_name="Mm V barotropic harmonic Phase" unit="degree" />
+
+ <field id="T2amp_v2D" long_name="T2 V barotropic harmonic Amplitude" unit="m/s" />
+ <field id="T2phase_v2D" long_name="T2 V barotropic harmonic Phase" unit="degree" />
+
+ <field id="L2amp_v2D" long_name="L2 V barotropic harmonic Amplitude" unit="m/s" />
+ <field id="L2phase_v2D" long_name="L2 V barotropic harmonic Phase" unit="degree" />
+
+ <field id="S1amp_v2D" long_name="S1 V barotropic harmonic Amplitude" unit="m/s" />
+ <field id="S1phase_v2D" long_name="S1 V barotropic harmonic Phase" unit="degree" />
+
+ <field id="2N2amp_v2D" long_name="2N2 V barotropic harmonic Amplitude" unit="m/s" />
+ <field id="2N2phase_v2D" long_name="2N2 V barotropic harmonic Phase" unit="degree" />
+
+ <field id="MU2amp_v2D" long_name="MU2 V barotropic harmonic Amplitude" unit="m/s" />
+ <field id="MU2phase_v2D" long_name="MU2 V barotropic harmonic Phase" unit="degree" />
+
+ <field id="NU2amp_v2D" long_name="NU2 V barotropic harmonic Amplitude" unit="m/s" />
+ <field id="NU2phase_v2D" long_name="NU2 V barotropic harmonic Phase" unit="degree" />
+
+ </field_group>
+
+ <!-- SBC -->
+
+ <field_group id="SBC" grid_ref="grid_T_2D" > <!-- time step automaticaly defined based on nn_fsbc -->
+ <field id="empmr" long_name="Net Upward Water Flux" standard_name="water_flux_out_of_sea_ice_and_sea_water" unit="kg/m2/s" />
+ <field id="empbmr" long_name="Net Upward Water Flux at pre. tstep" standard_name="water_flux_out_of_sea_ice_and_sea_water" unit="kg/m2/s" />
+ <field id="emp_oce" long_name="Evap minus Precip over ocean" standard_name="evap_minus_precip_over_sea_water" unit="kg/m2/s" />
+ <field id="emp_ice" long_name="Evap minus Precip over ice" standard_name="evap_minus_precip_over_sea_ice" unit="kg/m2/s" />
+ <field id="saltflx" long_name="Downward salt flux" unit="1e-3/m2/s" />
+ <field id="fmmflx" long_name="Water flux due to freezing/melting" unit="kg/m2/s" />
+ <field id="snowpre" long_name="Snow precipitation" standard_name="snowfall_flux" unit="kg/m2/s" />
+ <field id="runoffs" long_name="River Runoffs" standard_name="water_flux_into_sea_water_from_rivers" unit="kg/m2/s" />
+ <field id="precip" long_name="Total precipitation" standard_name="precipitation_flux" unit="kg/m2/s" />
+
+ <field id="qt" long_name="Net Downward Heat Flux" standard_name="surface_downward_heat_flux_in_sea_water" unit="W/m2" />
+ <field id="qns" long_name="non solar Downward Heat Flux" unit="W/m2" />
+ <field id="qsr" long_name="Shortwave Radiation" standard_name="net_downward_shortwave_flux_at_sea_water_surface" unit="W/m2" />
+ <field id="qsr3d" long_name="Shortwave Radiation 3D distribution" standard_name="downwelling_shortwave_flux_in_sea_water" unit="W/m2" grid_ref="grid_T_3D" />
+ <field id="qrp" long_name="Surface Heat Flux: Damping" standard_name="heat_flux_into_sea_water_due_to_newtonian_relaxation" unit="W/m2" />
+ <field id="erp" long_name="Surface Water Flux: Damping" standard_name="water_flux_out_of_sea_water_due_to_newtonian_relaxation" unit="kg/m2/s" />
+ <field id="taum" long_name="wind stress module" standard_name="magnitude_of_surface_downward_stress" unit="N/m2" />
+ <field id="wspd" long_name="wind speed module" standard_name="wind_speed" unit="m/s" />
+ <field id="uwnd" long_name="u component of wind" unit="m/s" grid_ref="grid_U_2D" />
+ <field id="vwnd" long_name="v component of wind" unit="m/s" grid_ref="grid_V_2D" />
+
+ <!-- * variable relative to atmospheric pressure forcing : available with ln_apr_dyn -->
+ <field id="ssh_ib" long_name="Inverse barometer sea surface height" standard_name="sea_surface_height_correction_due_to_air_pressure_at_low_frequency" unit="m" />
+
+ <!-- * variable related to ice shelf forcing * -->
+ <field id="fwfisf" long_name="Ice shelf melting" unit="kg/m2/s" />
+ <field id="fwfisf3d" long_name="Ice shelf melting" unit="kg/m2/s" grid_ref="grid_T_3D" />
+ <field id="qlatisf" long_name="Ice shelf latent heat flux" unit="W/m2" />
+ <field id="qlatisf3d" long_name="Ice shelf latent heat flux" unit="W/m2" grid_ref="grid_T_3D" />
+ <field id="qhcisf" long_name="Ice shelf heat content flux" unit="W/m2" />
+ <field id="qhcisf3d" long_name="Ice shelf heat content flux" unit="W/m2" grid_ref="grid_T_3D" />
+ <field id="isfgammat" long_name="transfert coefficient for isf (temperature) " unit="m/s" />
+ <field id="isfgammas" long_name="transfert coefficient for isf (salinity) " unit="m/s" />
+ <field id="stbl" long_name="salinity in the Losh tbl " unit="PSU" />
+ <field id="ttbl" long_name="temperature in the Losh tbl " unit="C" />
+ <field id="utbl" long_name="zonal current in the Losh tbl at T point " unit="m/s" />
+ <field id="vtbl" long_name="merid current in the Losh tbl at T point " unit="m/s" />
+ <field id="thermald" long_name="thermal driving of ice shelf melting " unit="C" />
+ <field id="tfrz" long_name="top freezing point (used to compute melt) " unit="C" />
+ <field id="tinsitu" long_name="top insitu temperature (used to cmpt melt) " unit="C" />
+ <field id="ustar" long_name="ustar at T point used in ice shelf melting " unit="m/s" />
+
+ <!-- *_oce variables available with ln_blk_clio or ln_blk_core -->
+ <field id="qlw_oce" long_name="Longwave Downward Heat Flux over open ocean" standard_name="surface_net_downward_longwave_flux" unit="W/m2" />
+ <field id="qsb_oce" long_name="Sensible Downward Heat Flux over open ocean" standard_name="surface_downward_sensible_heat_flux" unit="W/m2" />
+ <field id="qla_oce" long_name="Latent Downward Heat Flux over open ocean" standard_name="surface_downward_latent_heat_flux" unit="W/m2" />
+ <field id="qemp_oce" long_name="Downward Heat Flux from E-P over open ocean" unit="W/m2" />
+ <field id="taum_oce" long_name="wind stress module over open ocean" standard_name="magnitude_of_surface_downward_stress" unit="N/m2" />
+ <field id="qns_oce" long_name="Downward non-solar heat flux" unit="W/m2" />
+ <field id="qsr_oce" long_name="Downward solar heat flux" unit="W/m2" />
+ <field id="qt_oce" long_name="total flux at ocean surface" standard_name="surface_downward_heat_flux_in_sea_water" unit="W/m2" />
+ <!-- available key_oasis3 -->
+ <field id="snow_ao_cea" long_name="Snow over ice-free ocean (cell average)" standard_name="snowfall_flux" unit="kg/m2/s" />
+ <field id="snow_ai_cea" long_name="Snow over sea-ice (cell average)" standard_name="snowfall_flux" unit="kg/m2/s" />
+ <field id="subl_ai_cea" long_name="Sublimation over sea-ice (cell average)" standard_name="surface_snow_and_ice_sublimation_flux" unit="kg/m2/s" />
+ <field id="icealb_cea" long_name="Ice albedo (cell average)" standard_name="sea_ice_albedo" unit="1" />
+ <field id="calving_cea" long_name="Calving" standard_name="water_flux_into_sea_water_from_icebergs" unit="kg/m2/s" />
+ <field id="iceberg_cea" long_name="Iceberg" standard_name="water_flux_into_sea_water_from_icebergs" unit="kg/m2/s" />
+ <field id="iceshelf_cea" long_name="Iceshelf" standard_name="water_flux_into_sea_water_from_iceshelf" unit="kg/m2/s" />
+
+
+ <!-- available if key_oasis3 + conservative method -->
+ <field id="rain" long_name="Liquid precipitation" standard_name="rainfall_flux" unit="kg/m2/s" />
+ <field id="evap_ao_cea" long_name="Evaporation over ice-free ocean (cell average)" standard_name="water_evaporation_flux" unit="kg/m2/s" />
+ <field id="isnwmlt_cea" long_name="Snow over Ice melting (cell average)" standard_name="surface_snow_melt_flux" unit="kg/m2/s" />
+ <field id="fsal_virt_cea" long_name="Virtual salt flux due to ice formation (cell average)" standard_name="virtual_salt_flux_into_sea_water_due_to_sea_ice_thermodynamics" unit="kg/m2/s" />
+ <field id="fsal_real_cea" long_name="Real salt flux due to ice formation (cell average)" standard_name="downward_sea_ice_basal_salt_flux" unit="kg/m2/s" />
+ <field id="hflx_rain_cea" long_name="heat flux due to rainfall" standard_name="temperature_flux_due_to_rainfall_expressed_as_heat_flux_into_sea_water" unit="W/m2" />
+ <field id="hflx_evap_cea" long_name="heat flux due to evaporation" standard_name="temperature_flux_due_to_evaporation_expressed_as_heat_flux_out_of_sea_water" unit="W/m2" />
+ <field id="hflx_snow_cea" long_name="heat flux due to snow falling" standard_name="heat_flux_onto_ocean_and_ice_due_to_snow_thermodynamics" unit="W/m2" />
+ <field id="hflx_snow_ai_cea" long_name="heat flux due to snow falling over ice" standard_name="heat_flux_onto_ice_due_to_snow_thermodynamics" unit="W/m2" />
+ <field id="hflx_snow_ao_cea" long_name="heat flux due to snow falling over ice-free ocean" standard_name="heat_flux_onto_sea_water_due_to_snow_thermodynamics" unit="W/m2" />
+ <field id="hflx_ice_cea" long_name="heat flux due to ice thermodynamics" standard_name="heat_flux_into_sea_water_due_to_sea_ice_thermodynamics" unit="W/m2" />
+ <field id="hflx_rnf_cea" long_name="heat flux due to runoffs" standard_name="temperature_flux_due_to_runoff_expressed_as_heat_flux_into_sea_water" unit="W/m2" />
+ <field id="hflx_cal_cea" long_name="heat flux due to calving" standard_name="heat_flux_into_sea_water_due_to_calving" unit="W/m2" />
+ <field id="hflx_icb_cea" long_name="heat flux due to iceberg" standard_name="heat_flux_into_sea_water_due_to_icebergs" unit="W/m2" />
+ <field id="hflx_isf_cea" long_name="heat flux due to iceshelf" standard_name="heat_flux_into_sea_water_due_to_iceshelf" unit="W/m2" />
+ <field id="bicemel_cea" long_name="Rate of Melt at Sea Ice Base (cell average)" standard_name="tendency_of_sea_ice_amount_due_to_basal_melting" unit="kg/m2/s" />
+ <field id="licepro_cea" long_name="Lateral Sea Ice Growth Rate (cell average)" standard_name="tendency_of_sea_ice_amount_due_to_lateral_growth_of_ice_floes" unit="kg/m2/s" />
+ <field id="snowmel_cea" long_name="Snow Melt Rate (cell average)" standard_name="surface_snow_melt_flux" unit="kg/m2/s" />
+ <field id="sntoice_cea" long_name="Snow-Ice Formation Rate (cell average)" standard_name="tendency_of_sea_ice_amount_due_to_snow_conversion" unit="kg/m2/s" />
+ <field id="ticemel_cea" long_name="Rate of Melt at Upper Surface of Sea Ice (cell average)" standard_name="tendency_of_sea_ice_amount_due_to_surface_melting" unit="kg/m2/s" />
+
+ <!-- ice field (nn_ice=1) -->
+ <field id="ice_cover" long_name="Ice fraction" standard_name="sea_ice_area_fraction" unit="1" />
+
+ <!-- dilution -->
+ <field id="emp_x_sst" long_name="Concentration/Dilution term on SST" unit="kg*degC/m2/s" />
+ <field id="emp_x_sss" long_name="Concentration/Dilution term on SSS" unit="kg*1e-3/m2/s" />
+ <field id="rnf_x_sst" long_name="Runoff term on SST" unit="kg*degC/m2/s" />
+ <field id="rnf_x_sss" long_name="Runoff term on SSS" unit="kg*1e-3/m2/s" />
+
+ <!-- sbcssm variables -->
+ <field id="sst_m" unit="degC" />
+ <field id="sss_m" unit="psu" />
+ <field id="ssu_m" unit="m/s" />
+ <field id="ssv_m" unit="m/s" />
+ <field id="ssh_m" unit="m" />
+ <field id="e3t_m" unit="m" />
+ <field id="frq_m" unit="-" />
+
+ </field_group>
+
+ <!-- U grid -->
+
+ <field_group id="grid_U" grid_ref="grid_U_2D">
+ <field id="e3u" long_name="U-cell thickness" standard_name="cell_thickness" unit="m" grid_ref="grid_U_3D" />
+ <field id="e3u_0" long_name="Initial U-cell thickness" standard_name="ref_cell_thickness" unit="m" grid_ref="grid_U_3D"/>
+ <field id="utau" long_name="Wind Stress along i-axis" standard_name="surface_downward_x_stress" unit="N/m2" />
+ <field id="uoce" long_name="ocean current along i-axis" standard_name="sea_water_x_velocity" unit="m/s" grid_ref="grid_U_3D" />
+ <field id="uoce_e3u" long_name="ocean current along i-axis (thickness weighted)" unit="m/s" grid_ref="grid_U_3D" > uoce * e3u </field>
+ <field id="ssu" long_name="ocean surface current along i-axis" unit="m/s" />
+ <field id="sbu" long_name="ocean bottom current along i-axis" unit="m/s" />
+ <field id="ubar" long_name="ocean barotropic current along i-axis" unit="m/s" />
+ <field id="uocetr_eff" long_name="Effective ocean transport along i-axis" standard_name="ocean_volume_x_transport" unit="m3/s" grid_ref="grid_U_3D" />
+ <field id="uocet" long_name="ocean transport along i-axis times temperature (CRS)" unit="degC*m/s" grid_ref="grid_U_3D" />
+ <field id="uoces" long_name="ocean transport along i-axis times salinity (CRS)" unit="1e-3*m/s" grid_ref="grid_U_3D" />
+
+ <!-- u-eddy coefficients (ldftra) -->
+ <field id="ahtu_2d" long_name=" surface u-eddy diffusivity coefficient" unit="m2/s or m4/s" />
+ <field id="ahtu_3d" long_name=" 3D u-EIV coefficient" unit="m2/s or m4/s" grid_ref="grid_U_3D"/>
+ <field id="aeiu_2d" long_name=" surface u-EIV coefficient" unit="m2/s" />
+ <field id="aeiu_3d" long_name=" 3D u-EIV coefficient" unit="m2/s" grid_ref="grid_U_3D"/>
+
+ <!-- variables available with MLE -->
+ <field id="psiu_mle" long_name="MLE streamfunction along i-axis" unit="m3/s" grid_ref="grid_U_3D" />
+
+ <!-- uoce_eiv: available EIV -->
+ <field id="uoce_eiv" long_name="EIV ocean current along i-axis" standard_name="bolus_sea_water_x_velocity" unit="m/s" grid_ref="grid_U_3D" />
+
+ <!-- uoce_eiv: available with key_trabbl -->
+ <field id="uoce_bbl" long_name="BBL ocean current along i-axis" unit="m/s" />
+ <field id="ahu_bbl" long_name="BBL diffusive flux along i-axis" unit="m3/s" />
+
+ <!-- variable for ice shelves -->
+ <field id="utbl" long_name="zonal current in the Losh tbl" unit="m/s" />
+
+ <field id="u_masstr" long_name="Ocean Mass X Transport" standard_name="ocean_mass_x_transport" unit="kg/s" grid_ref="grid_U_3D" />
+ <field id="u_masstr_vint" long_name="vertical integral of ocean eulerian mass transport along i-axis" standard_name="vertical_integral_of_ocean_mass_x_transport" unit="kg/s" />
+ <field id="u_heattr" long_name="ocean eulerian heat transport along i-axis" standard_name="ocean_heat_x_transport" unit="W" />
+ <field id="u_salttr" long_name="ocean eulerian salt transport along i-axis" standard_name="ocean_salt_x_transport" unit="1e-3*kg/s" />
+ <field id="uadv_heattr" long_name="ocean advective heat transport along i-axis" standard_name="advectice_ocean_heat_x_transport" unit="W" />
+ <field id="uadv_salttr" long_name="ocean advective salt transport along i-axis" standard_name="advectice_ocean_salt_x_transport" unit="1e-3*kg/s" />
+ <field id="ueiv_heattr" long_name="ocean bolus heat transport along i-axis" standard_name="ocean_heat_x_transport_due_to_bolus_advection" unit="W" />
+ <field id="ueiv_salttr" long_name="ocean bolus salt transport along i-axis" standard_name="ocean_salt_x_transport_due_to_bolus_advection" unit="Kg" />
+ <field id="ueiv_heattr3d" long_name="ocean bolus heat transport along i-axis" standard_name="ocean_heat_x_transport_due_to_bolus_advection" unit="W" grid_ref="grid_U_3D" />
+ <field id="ueiv_salttr3d" long_name="ocean bolus salt transport along i-axis" standard_name="ocean_salt_x_transport_due_to_bolus_advection" unit="kg" grid_ref="grid_U_3D" />
+ <field id="udiff_heattr" long_name="ocean diffusion heat transport along i-axis" standard_name="ocean_heat_x_transport_due_to_diffusion" unit="W" />
+ <field id="udiff_salttr" long_name="ocean diffusion salt transport along i-axis" standard_name="ocean_salt_x_transport_due_to_diffusion" unit="1e-3*kg/s" />
+ </field_group>
+
+ <!-- V grid -->
+
+ <field_group id="grid_V" grid_ref="grid_V_2D">
+ <field id="e3v" long_name="V-cell thickness" standard_name="cell_thickness" unit="m" grid_ref="grid_V_3D" />
+ <field id="e3v_0" long_name="Initial V-cell thickness" standard_name="ref_cell_thickness" unit="m" grid_ref="grid_V_3D"/>
+ <field id="vtau" long_name="Wind Stress along j-axis" standard_name="surface_downward_y_stress" unit="N/m2" />
+ <field id="voce" long_name="ocean current along j-axis" standard_name="sea_water_y_velocity" unit="m/s" grid_ref="grid_V_3D" />
+ <field id="voce_e3v" long_name="ocean current along j-axis (thickness weighted)" unit="m/s" grid_ref="grid_V_3D" > voce * e3v </field>
+ <field id="ssv" long_name="ocean surface current along j-axis" unit="m/s" />
+ <field id="sbv" long_name="ocean bottom current along j-axis" unit="m/s" />
+ <field id="vbar" long_name="ocean barotropic current along j-axis" unit="m/s" />
+ <field id="vocetr_eff" long_name="Effective ocean transport along j-axis" standard_name="ocean_volume_y_transport" unit="m3/s" grid_ref="grid_V_3D" />
+ <field id="vocet" long_name="ocean transport along j-axis times temperature (CRS)" unit="degC*m/s" grid_ref="grid_V_3D" />
+ <field id="voces" long_name="ocean transport along j-axis times salinity (CRS)" unit="1e-3*m/s" grid_ref="grid_V_3D" />
+
+ <!-- v-eddy coefficients (ldftra, ldfdyn) -->
+ <field id="ahtv_2d" long_name=" surface v-eddy diffusivity coefficient" unit="m2/s or (m4/s)^1/2" />
+ <field id="ahtv_3d" long_name=" 3D v-eddy diffusivity coefficient" unit="m2/s or (m4/s)^1/2" grid_ref="grid_V_3D"/>
+ <field id="aeiv_2d" long_name=" surface v-EIV coefficient" unit="m2/s" />
+ <field id="aeiv_3d" long_name=" 3D v-EIV coefficient" unit="m2/s" grid_ref="grid_V_3D" />
+
+ <!-- variables available with MLE -->
+ <field id="psiv_mle" long_name="MLE streamfunction along j-axis" unit="m3/s" grid_ref="grid_V_3D" />
+
+ <!-- voce_eiv: available with EIV -->
+ <field id="voce_eiv" long_name="EIV ocean current along j-axis" standard_name="bolus_sea_water_y_velocity" unit="m/s" grid_ref="grid_V_3D" />
+
+ <!-- voce_eiv: available with key_trabbl -->
+ <field id="voce_bbl" long_name="BBL ocean current along j-axis" unit="m/s" />
+ <field id="ahv_bbl" long_name="BBL diffusive flux along j-axis" unit="m3/s" />
+
+ <!-- variable for ice shelves -->
+ <field id="vtbl" long_name="meridional current in the Losh tbl" unit="m/s" />
+
+ <!-- variables available with diaar5 -->
+ <field id="v_masstr" long_name="ocean eulerian mass transport along j-axis" standard_name="ocean_mass_y_transport" unit="kg/s" grid_ref="grid_V_3D" />
+ <field id="v_heattr" long_name="ocean eulerian heat transport along j-axis" standard_name="ocean_heat_y_transport" unit="W" />
+ <field id="v_salttr" long_name="ocean eulerian salt transport along i-axis" standard_name="ocean_salt_y_transport" unit="1e-3*kg/s" />
+ <field id="vadv_heattr" long_name="ocean advective heat transport along j-axis" standard_name="advectice_ocean_heat_y_transport" unit="W" />
+ <field id="vadv_salttr" long_name="ocean advective salt transport along j-axis" standard_name="advectice_ocean_salt_y_transport" unit="1e-3*kg/s" />
+ <field id="veiv_heattr" long_name="ocean bolus heat transport along j-axis" standard_name="ocean_heat_y_transport_due_to_bolus_advection" unit="W" />
+ <field id="veiv_salttr" long_name="ocean bolus salt transport along j-axis" standard_name="ocean_salt_x_transport_due_to_bolus_advection" unit="Kg" />
+ <field id="veiv_heattr3d" long_name="ocean bolus heat transport along j-axis" standard_name="ocean_heat_y_transport_due_to_bolus_advection" unit="W" grid_ref="grid_V_3D" />
+ <field id="veiv_salttr3d" long_name="ocean bolus salt transport along j-axis" standard_name="ocean_salt_y_transport_due_to_bolus_advection" unit="kg" grid_ref="grid_V_3D" />
+ <field id="vdiff_heattr" long_name="ocean diffusion heat transport along j-axis" standard_name="ocean_heat_y_transport_due_to_diffusion" unit="W" />
+ <field id="vdiff_salttr" long_name="ocean diffusion salt transport along j-axis" standard_name="ocean_salt_y_transport_due_to_diffusion" unit="1e-3*kg/s" />
+ </field_group>
+
+ <!-- W grid -->
+
+ <field_group id="grid_W" grid_ref="grid_W_3D">
+ <field id="e3w" long_name="W-cell thickness" standard_name="cell_thickness" unit="m" />
+ <field id="woce" long_name="ocean vertical velocity" standard_name="upward_sea_water_velocity" unit="m/s" />
+ <field id="wocetr_eff" long_name="effective ocean vertical transport" unit="m3/s" />
+
+ <!-- woce_eiv: available with EIV -->
+ <field id="woce_eiv" long_name="EIV ocean vertical velocity" standard_name="bolus_upward_sea_water_velocity" unit="m/s" />
+
+ <field id="avt" long_name="vertical eddy diffusivity" standard_name="ocean_vertical_heat_diffusivity" unit="m2/s" />
+ <field id="logavt" long_name="logarithm of vertical eddy diffusivity" standard_name="ocean_vertical_heat_diffusivity" unit="m2/s" />
+ <field id="avm" long_name="vertical eddy viscosity" standard_name="ocean_vertical_momentum_diffusivity" unit="m2/s" />
+
+ <!-- avs: available with key_zdfddm -->
+ <field id="avs" long_name="salt vertical eddy diffusivity" standard_name="ocean_vertical_salt_diffusivity" unit="m2/s" />
+ <field id="logavs" long_name="logarithm of salt vertical eddy diffusivity" standard_name="ocean_vertical_heat_diffusivity" unit="m2/s" />
+
+ <!-- avt_evd and avm_evd: available with ln_zdfevd -->
+ <field id="avt_evd" long_name="convective enhancement of vertical diffusivity" standard_name="ocean_vertical_tracer_diffusivity_due_to_convection" unit="m2/s" />
+ <field id="avm_evd" long_name="convective enhancement of vertical viscosity" standard_name="ocean_vertical_momentum_diffusivity_due_to_convection" unit="m2/s" />
+
+ <!-- avt_tide: available with key_zdftmx -->
+ <field id="av_tide" long_name="tidal vertical diffusivity" standard_name="ocean_vertical_tracer_diffusivity_due_to_tides" unit="m2/s" />
+
+ <!-- variables available with key_zdftmx_new -->
+ <field id="av_ratio" long_name="S over T diffusivity ratio" standard_name="salinity_over_temperature_diffusivity_ratio" unit="1" />
+ <field id="av_wave" long_name="wave-induced vertical diffusivity" standard_name="ocean_vertical_tracer_diffusivity_due_to_internal_waves" unit="m2/s" />
+ <field id="bflx_tmx" long_name="wave-induced buoyancy flux" standard_name="buoyancy_flux_due_to_internal_waves" unit="W/kg" />
+ <field id="pcmap_tmx" long_name="power consumed by wave-driven mixing" standard_name="vertically_integrated_power_consumption_by_wave_driven_mixing" unit="W/m2" grid_ref="grid_W_2D" />
+ <field id="emix_tmx" long_name="power density available for mixing" standard_name="power_available_for_mixing_from_breaking_internal_waves" unit="W/kg" />
+
+ <!-- variables available with diaar5 -->
+ <field id="w_masstr" long_name="vertical mass transport" standard_name="upward_ocean_mass_transport" unit="kg/s" />
+ <field id="w_masstr2" long_name="square of vertical mass transport" standard_name="square_of_upward_ocean_mass_transport" unit="kg2/s2" />
+
+ <!-- aht2d and aht2d_eiv -->
+ <field id="aht2d" long_name="lateral eddy diffusivity" standard_name="ocean_tracer_xy_laplacian_diffusivity" unit="m2/s" grid_ref="grid_W_2D" />
+ <field id="aht2d_eiv" long_name="EIV lateral eddy diffusivity" standard_name="ocean_tracer_bolus_laplacian_diffusivity" unit="m2/s" grid_ref="grid_W_2D" />
+
+ </field_group>
+
+ <!-- F grid -->
+ <!-- f-eddy viscosity coefficients (ldfdyn) -->
+ <field id="ahmf_2d" long_name=" surface f-eddy viscosity coefficient" unit="m2/s or m4/s" />
+ <field id="ahmf_3d" long_name=" 3D f-eddy viscosity coefficient" unit="m2/s or m4/s" grid_ref="grid_T_3D"/>
+
+ <field_group id="scalar" grid_ref="grid_T_2D" >
+ <field id="voltot" long_name="global total volume" standard_name="sea_water_volume" unit="m3" />
+ <field id="sshtot" long_name="global mean ssh" standard_name="global_average_sea_level_change" unit="m" />
+ <field id="sshsteric" long_name="global mean ssh steric" standard_name="global_average_steric_sea_level_change" unit="m" />
+ <field id="sshthster" long_name="global mean ssh thermosteric" standard_name="global_average_thermosteric_sea_level_change" unit="m" />
+ <field id="masstot" long_name="global total mass" standard_name="sea_water_mass" unit="kg" />
+ <field id="temptot" long_name="global mean temperature" standard_name="sea_water_potential_temperature" unit="degC" />
+ <field id="saltot" long_name="global mean salinity" standard_name="sea_water_salinity" unit="1e-3" />
+ <field id="fram_trans" long_name="Sea Ice Mass Transport Through Fram Strait" standard_name="sea_ice_transport_across_line" unit="kg/s" />
+
+ <!-- available with ln_diahsb -->
+ <field id="bgtemper" long_name="drift in global mean temperature wrt timestep 1" standard_name="change_over_time_in_sea_water_potential_temperature" unit="degC" />
+ <field id="bgsaline" long_name="drift in global mean salinity wrt timestep 1" standard_name="change_over_time_in_sea_water_practical_salinity" unit="1e-3" />
+ <field id="bgheatco" long_name="drift in global mean heat content wrt timestep 1" unit="1.e20J" />
+ <field id="bgheatfx" long_name="drift in global mean heat flux wrt timestep 1" unit="W/m2" />
+ <field id="bgsaltco" long_name="drift in global mean salt content wrt timestep 1" unit="1e-3*km3" />
+ <field id="bgvolssh" long_name="drift in global mean ssh volume wrt timestep 1" unit="km3" />
+ <field id="bgvole3t" long_name="drift in global mean volume variation (e3t) wrt timestep 1" unit="km3" />
+ <field id="bgfrcvol" long_name="global mean volume from forcing" unit="km3" />
+ <field id="bgfrctem" long_name="global mean heat content from forcing" unit="1.e20J" />
+ <field id="bgfrchfx" long_name="global mean heat flux from forcing" unit="W/m2" />
+ <field id="bgfrcsal" long_name="global mean salt content from forcing" unit="1e-3*km3" />
+ <field id="bgmistem" long_name="global mean temperature error due to free surface (linssh true)" unit="degC" />
+ <field id="bgmissal" long_name="global mean salinity error due to free surface (linssh true)" unit="1e-3" />
+ </field_group>
+
+ <!-- variables available with key_float -->
+
+ <field_group id="floatvar" grid_ref="grid_T_nfloat" operation="instant" >
+ <field id="traj_lon" long_name="floats longitude" unit="degrees_east" />
+ <field id="traj_lat" long_name="floats latitude" unit="degrees_north" />
+ <field id="traj_dep" long_name="floats depth" unit="m" />
+ <field id="traj_temp" long_name="floats temperature" standard_name="sea_water_potential_temperature" unit="degC" />
+ <field id="traj_salt" long_name="floats salinity" standard_name="sea_water_practical_salinity" unit="1e-3" />
+ <field id="traj_dens" long_name="floats in-situ density" standard_name="sea_water_density" unit="kg/m3" />
+ <field id="traj_group" long_name="floats group" unit="1" />
+ </field_group>
+
+ <!-- variables available with iceberg trajectories -->
+
+ <field_group id="icbvar" domain_ref="grid_T" >
+ <field id="berg_melt" long_name="icb melt rate of icebergs" unit="kg/m2/s" />
+ <field id="berg_buoy_melt" long_name="icb buoyancy component of iceberg melt rate" unit="kg/m2/s" />
+ <field id="berg_eros_melt" long_name="icb erosion component of iceberg melt rate" unit="kg/m2/s" />
+ <field id="berg_conv_melt" long_name="icb convective component of iceberg melt rate" unit="kg/m2/s" />
+ <field id="berg_virtual_area" long_name="icb virtual coverage by icebergs" unit="m2" />
+ <field id="bits_src" long_name="icb mass source of bergy bits" unit="kg/m2/s" />
+ <field id="bits_melt" long_name="icb melt rate of bergy bits" unit="kg/m2/s" />
+ <field id="bits_mass" long_name="icb bergy bit density field" unit="kg/m2" />
+ <field id="berg_mass" long_name="icb iceberg density field" unit="kg/m2" />
+ <field id="calving" long_name="icb calving mass input" unit="kg/s" />
+ <field id="berg_floating_melt" long_name="icb melt rate of icebergs + bits" unit="kg/m2/s" />
+ <field id="berg_real_calving" long_name="icb calving into iceberg class" unit="kg/s" axis_ref="icbcla" />
+ <field id="berg_stored_ice" long_name="icb accumulated ice mass by class" unit="kg" axis_ref="icbcla" />
+ </field_group>
+
+ <!-- Poleward transport : ptr -->
+ <field_group id="diaptr" >
+ <field id="zomsfglo" long_name="Meridional Stream-Function: Global" unit="Sv" grid_ref="gznl_W_3D" />
+ <field id="zomsfatl" long_name="Meridional Stream-Function: Atlantic" unit="Sv" grid_ref="gznl_W_3D" />
+ <field id="zomsfpac" long_name="Meridional Stream-Function: Pacific" unit="Sv" grid_ref="gznl_W_3D" />
+ <field id="zomsfind" long_name="Meridional Stream-Function: Indian" unit="Sv" grid_ref="gznl_W_3D" />
+ <field id="zomsfipc" long_name="Meridional Stream-Function: Pacific+Indian" unit="Sv" grid_ref="gznl_W_3D" />
+ <field id="zotemglo" long_name="Zonal Mean Temperature : Global" unit="degree_C" grid_ref="gznl_T_3D" />
+ <field id="zotematl" long_name="Zonal Mean Temperature : Atlantic" unit="degree_C" grid_ref="gznl_T_3D" />
+ <field id="zotempac" long_name="Zonal Mean Temperature : Pacific" unit="degree_C" grid_ref="gznl_T_3D" />
+ <field id="zotemind" long_name="Zonal Mean Temperature : Indian" unit="degree_C" grid_ref="gznl_T_3D" />
+ <field id="zotemipc" long_name="Zonal Mean Temperature : Pacific+Indian" unit="degree_C" grid_ref="gznl_T_3D" />
+ <field id="zosalglo" long_name="Zonal Mean Salinity : Global" unit="0.001" grid_ref="gznl_T_3D" />
+ <field id="zosalatl" long_name="Zonal Mean Salinity : Atlantic" unit="0.001" grid_ref="gznl_T_3D" />
+ <field id="zosalpac" long_name="Zonal Mean Salinity : Pacific" unit="0.001" grid_ref="gznl_T_3D" />
+ <field id="zosalind" long_name="Zonal Mean Salinity : Indian" unit="0.001" grid_ref="gznl_T_3D" />
+ <field id="zosalipc" long_name="Zonal Mean Salinity : Pacific+Indian" unit="0.001" grid_ref="gznl_T_3D" />
+ <field id="zosrfglo" long_name="Zonal Mean Surface" unit="m2" grid_ref="gznl_T_3D" />
+ <field id="zosrfatl" long_name="Zonal Mean Surface : Atlantic" unit="m2" grid_ref="gznl_T_3D" />
+ <field id="zosrfpac" long_name="Zonal Mean Surface : Pacific" unit="m2" grid_ref="gznl_T_3D" />
+ <field id="zosrfind" long_name="Zonal Mean Surface : Indian" unit="m2" grid_ref="gznl_T_3D" />
+ <field id="zosrfipc" long_name="Zonal Mean Surface : Pacific+Indian" unit="m2" grid_ref="gznl_T_3D" />
+ <field id="sophtadv" long_name="Advective Heat Transport" unit="PW" grid_ref="gznl_T_2D" />
+ <field id="sophtadv_atl" long_name="Advective Heat Transport: Atlantic" unit="PW" grid_ref="gznl_T_2D" />
+ <field id="sophtadv_pac" long_name="Advective Heat Transport: Pacific" unit="PW" grid_ref="gznl_T_2D" />
+ <field id="sophtadv_ind" long_name="Advective Heat Transport: Indian" unit="PW" grid_ref="gznl_T_2D" />
+ <field id="sophtadv_ipc" long_name="Advective Heat Transport: Pacific+Indian" unit="PW" grid_ref="gznl_T_2D" />
+ <field id="sophtldf" long_name="Diffusive Heat Transport" unit="PW" grid_ref="gznl_T_2D" />
+ <field id="sophtldf_atl" long_name="Diffusive Heat Transport: Atlantic" unit="PW" grid_ref="gznl_T_2D" />
+ <field id="sophtldf_pac" long_name="Diffusive Heat Transport: Pacific" unit="PW" grid_ref="gznl_T_2D" />
+ <field id="sophtldf_ind" long_name="Diffusive Heat Transport: Indian" unit="PW" grid_ref="gznl_T_2D" />
+ <field id="sophtldf_ipc" long_name="Diffusive Heat Transport: Pacific+Indian" unit="PW" grid_ref="gznl_T_2D" />
+ <field id="sophtove" long_name="Overturning Heat Transport" unit="PW" grid_ref="gznl_T_2D" />
+ <field id="sophtove_atl" long_name="Overturning Heat Transport: Atlantic" unit="PW" grid_ref="gznl_T_2D" />
+ <field id="sophtove_pac" long_name="Overturning Heat Transport: Pacific" unit="PW" grid_ref="gznl_T_2D" />
+ <field id="sophtove_ind" long_name="Overturning Heat Transport: Indian" unit="PW" grid_ref="gznl_T_2D" />
+ <field id="sophtove_ipc" long_name="Overturning Heat Transport: Pacific+Indian" unit="PW" grid_ref="gznl_T_2D" />
+ <field id="sophtbtr" long_name="Barotropic Heat Transport" unit="PW" grid_ref="gznl_T_2D" />
+ <field id="sophtbtr_atl" long_name="Barotropic Heat Transport: Atlantic" unit="PW" grid_ref="gznl_T_2D" />
+ <field id="sophtbtr_pac" long_name="Barotropic Heat Transport: Pacific" unit="PW" grid_ref="gznl_T_2D" />
+ <field id="sophtbtr_ind" long_name="Barotropic Heat Transport: Indian" unit="PW" grid_ref="gznl_T_2D" />
+ <field id="sophtbtr_ipc" long_name="Barotropic Heat Transport: Pacific+Indian" unit="PW" grid_ref="gznl_T_2D" />
+ <field id="sophteiv" long_name="Heat Transport from mesoscale eddy advection" unit="PW" grid_ref="gznl_T_2D" />
+ <field id="sophteiv_atl" long_name="Heat Transport from mesoscale eddy advection: Atlantic" unit="PW" grid_ref="gznl_T_2D" />
+ <field id="sophteiv_pac" long_name="Heat Transport from mesoscale eddy advection: Pacific" unit="PW" grid_ref="gznl_T_2D" />
+ <field id="sophteiv_ind" long_name="Heat Transport from mesoscale eddy advection: Indian" unit="PW" grid_ref="gznl_T_2D" />
+ <field id="sophteiv_ipc" long_name="Heat Transport from mesoscale eddy advection: Pacific+Indian" unit="PW" grid_ref="gznl_T_2D" />
+ <field id="sopstadv" long_name="Advective Salt Transport" unit="Giga g/s" grid_ref="gznl_T_2D" />
+ <field id="sopstadv_atl" long_name="Advective Salt Transport: Atlantic" unit="Giga g/s" grid_ref="gznl_T_2D" />
+ <field id="sopstadv_pac" long_name="Advective Salt Transport: Pacific" unit="Giga g/s" grid_ref="gznl_T_2D" />
+ <field id="sopstadv_ind" long_name="Advective Salt Transport: Indian" unit="Giga g/s" grid_ref="gznl_T_2D" />
+ <field id="sopstadv_ipc" long_name="Advective Salt Transport: Pacific+Indian" unit="Giga g/s" grid_ref="gznl_T_2D" />
+ <field id="sopstove" long_name="Overturning Salt Transport" unit="Giga g/s" grid_ref="gznl_T_2D" />
+ <field id="sopstove_atl" long_name="Overturning Salt Transport: Atlantic" unit="Giga g/s" grid_ref="gznl_T_2D" />
+ <field id="sopstove_pac" long_name="Overturning Salt Transport: Pacific" unit="Giga g/s" grid_ref="gznl_T_2D" />
+ <field id="sopstove_ind" long_name="Overturning Salt Transport: Indian" unit="Giga g/s" grid_ref="gznl_T_2D" />
+ <field id="sopstove_ipc" long_name="Overturning Salt Transport: Pacific+Indian" unit="Giga g/s" grid_ref="gznl_T_2D" />
+ <field id="sopstbtr" long_name="Barotropic Salt Transport" unit="Giga g/s" grid_ref="gznl_T_2D" />
+ <field id="sopstbtr_atl" long_name="Barotropic Salt Transport: Atlantic" unit="Giga g/s" grid_ref="gznl_T_2D" />
+ <field id="sopstbtr_pac" long_name="Barotropic Salt Transport: Pacific" unit="Giga g/s" grid_ref="gznl_T_2D" />
+ <field id="sopstbtr_ind" long_name="Barotropic Salt Transport: Indian" unit="Giga g/s" grid_ref="gznl_T_2D" />
+ <field id="sopstbtr_ipc" long_name="Barotropic Salt Transport: Pacific+Indian" unit="Giga g/s" grid_ref="gznl_T_2D" />
+ <field id="sopstldf" long_name="Diffusive Salt Transport" unit="Giga g/s" grid_ref="gznl_T_2D" />
+ <field id="sopstldf_atl" long_name="Diffusive Salt Transport: Atlantic" unit="Giga g/s" grid_ref="gznl_T_2D" />
+ <field id="sopstldf_pac" long_name="Diffusive Salt Transport: Pacific" unit="Giga g/s" grid_ref="gznl_T_2D" />
+ <field id="sopstldf_ind" long_name="Diffusive Salt Transport: Indian" unit="Giga g/s" grid_ref="gznl_T_2D" />
+ <field id="sopstldf_ipc" long_name="Diffusive Salt Transport: Pacific+Indian" unit="Giga g/s" grid_ref="gznl_T_2D" />
+ <field id="sopsteiv" long_name="Salt Transport from mesoscale eddy advection" unit="Giga g/s" grid_ref="gznl_T_2D" />
+ <field id="sopsteiv_atl" long_name="Salt Transport from mesoscale eddy advection: Atlantic" unit="Giga g/s" grid_ref="gznl_T_2D" />
+ <field id="sopsteiv_pac" long_name="Salt Transport from mesoscale eddy advection: Pacific" unit="Giga g/s" grid_ref="gznl_T_2D" />
+ <field id="sopsteiv_ind" long_name="Salt Transport from mesoscale eddy advection: Indian" unit="Giga g/s" grid_ref="gznl_T_2D" />
+ <field id="sopsteiv_ipc" long_name="Salt Transport from mesoscale eddy advection: Pacific+Indian" unit="Giga g/s" grid_ref="gznl_T_2D" />
+ </field_group>
+
+ <!--
+============================================================================================================
+ Physical ocean model trend diagnostics : temperature, KE, PE, momentum
+============================================================================================================
+ -->
+
+ <!-- variables available with ln_tra_trd -->
+ <!-- Asselin trends calculated on odd time steps-->
+ <field_group id="trendT_odd" grid_ref="grid_T_3D">
+ <field id="ttrd_atf" long_name="temperature-trend: asselin time filter" unit="degree_C/s" />
+ <field id="strd_atf" long_name="salinity -trend: asselin time filter" unit="0.001/s" />
+ <!-- Thickness weighted versions: -->
+ <field id="ttrd_atf_e3t" unit="degC/s * m" > ttrd_atf * e3t </field>
+ <field id="strd_atf_e3t" unit="1e-3/s * m" > strd_atf * e3t </field>
+ <!-- OMIP layer-integrated trends -->
+ <field id="ttrd_atf_li" long_name="layer integrated heat-trend: asselin time filter " unit="W/m^2" > ttrd_atf_e3t * 1026.0 * 3991.86795711963 </field>
+ <field id="strd_atf_li" long_name="layer integrated salt -trend: asselin time filter " unit="kg/(m^2 s)" > strd_atf_e3t * 1026.0 * 0.001 </field>
+ </field_group>
+
+ <!-- Other trends calculated on even time steps-->
+ <field_group id="trendT_even" grid_ref="grid_T_3D">
+ <field id="ttrd_xad" long_name="temperature-trend: i-advection" unit="degC/s" />
+ <field id="strd_xad" long_name="salinity -trend: i-advection" unit="1e-3/s" />
+ <field id="ttrd_yad" long_name="temperature-trend: j-advection" unit="degC/s" />
+ <field id="strd_yad" long_name="salinity -trend: j-advection" unit="1e-3/s" />
+ <field id="ttrd_zad" long_name="temperature-trend: k-advection" unit="degC/s" />
+ <field id="strd_zad" long_name="salinity -trend: k-advection" unit="1e-3/s" />
+ <field id="ttrd_ad" long_name="temperature-trend: advection" standard_name="tendency_of_sea_water_temperature_due_to_advection" unit="degC/s" > sqrt( ttrd_xad^2 + ttrd_yad^2 + ttrd_zad^2 ) </field>
+ <field id="strd_ad" long_name="salinity -trend: advection" standard_name="tendency_of_sea_water_salinity_due_to_advection" unit="1e-3/s" > sqrt( strd_xad^2 + strd_yad^2 + strd_zad^2 ) </field>
+ <field id="ttrd_totad" long_name="temperature-trend: total advection" standard_name="tendency_of_sea_water_salinity_due_to_advection" unit="degC/s" />
+ <field id="strd_totad" long_name="salinity -trend: total advection" standard_name="tendency_of_sea_water_salinity_due_to_advection" unit="1e-3/s" />
+ <field id="ttrd_sad" long_name="temperature-trend: surface adv. (linssh true)" unit="degC/s" grid_ref="grid_T_2D" />
+ <field id="strd_sad" long_name="salinity -trend: surface adv. (linssh true)" unit="1e-3/s" grid_ref="grid_T_2D" />
+ <field id="ttrd_ldf" long_name="temperature-trend: lateral diffusion" standard_name="tendency_of_sea_water_temperature_due_to_horizontal_mixing" unit="degC/s" />
+ <field id="strd_ldf" long_name="salinity -trend: lateral diffusion" standard_name="tendency_of_sea_water_salinity_due_to_horizontal_mixing" unit="1e-3/s" />
+ <field id="ttrd_zdf" long_name="temperature-trend: vertical diffusion" standard_name="tendency_of_sea_water_temperature_due_to_vertical_mixing" unit="degC/s" />
+ <field id="strd_zdf" long_name="salinity -trend: vertical diffusion" standard_name="tendency_of_sea_water_salinity_due_to_vertical_mixing" unit="1e-3/s" />
+ <field id="ttrd_evd" long_name="temperature-trend: EVD convection" unit="degC/s" />
+ <field id="strd_evd" long_name="salinity -trend: EVD convection" unit="1e-3/s" />
+
+ <!-- ln_traldf_iso=T only (iso-neutral diffusion) -->
+ <field id="ttrd_iso" long_name="temperature-trend: isopycnal diffusion" unit="degC/s" > ttrd_ldf + ttrd_zdf - ttrd_zdfp </field>
+ <field id="strd_iso" long_name="salinity -trend: isopycnal diffusion" unit="1e-3/s" > strd_ldf + strd_zdf - strd_zdfp </field>
+ <field id="ttrd_zdfp" long_name="temperature-trend: pure vert. diffusion" unit="degC/s" />
+ <field id="strd_zdfp" long_name="salinity -trend: pure vert. diffusion" unit="1e-3/s" />
+
+ <!-- -->
+ <field id="ttrd_dmp" long_name="temperature-trend: interior restoring" unit="degC/s" />
+ <field id="strd_dmp" long_name="salinity -trend: interior restoring" unit="1e-3/s" />
+ <field id="ttrd_bbl" long_name="temperature-trend: bottom boundary layer" unit="degC/s" />
+ <field id="strd_bbl" long_name="salinity -trend: bottom boundary layer" unit="1e-3/s" />
+ <field id="ttrd_npc" long_name="temperature-trend: non-penetrative conv." unit="degC/s" />
+ <field id="strd_npc" long_name="salinity -trend: non-penetrative conv." unit="1e-3/s" />
+ <field id="ttrd_qns" long_name="temperature-trend: non-solar flux + runoff" unit="degC/s" grid_ref="grid_T_2D" />
+ <field id="strd_cdt" long_name="salinity -trend: C/D term + runoff" unit="degC/s" grid_ref="grid_T_2D" />
+ <field id="ttrd_qsr" long_name="temperature-trend: solar penetr. heating" unit="degC/s" />
+ <field id="ttrd_bbc" long_name="temperature-trend: geothermal heating" unit="degC/s" />
+
+ <!-- Thickness weighted versions: -->
+ <field id="ttrd_xad_e3t" unit="degC/s * m" > ttrd_xad * e3t </field>
+ <field id="strd_xad_e3t" unit="1e-3/s * m" > strd_xad * e3t </field>
+ <field id="ttrd_yad_e3t" unit="degC/s * m" > ttrd_yad * e3t </field>
+ <field id="strd_yad_e3t" unit="1e-3/s * m" > strd_yad * e3t </field>
+ <field id="ttrd_zad_e3t" unit="degC/s * m" > ttrd_zad * e3t </field>
+ <field id="strd_zad_e3t" unit="1e-3/s * m" > strd_zad * e3t </field>
+ <field id="ttrd_ad_e3t" unit="degC/s * m" > ttrd_ad * e3t </field>
+ <field id="strd_ad_e3t" unit="1e-3/s * m" > strd_ad * e3t </field>
+ <field id="ttrd_totad_e3t" unit="degC/s * m" > ttrd_totad * e3t </field>
+ <field id="strd_totad_e3t" unit="1e-3/s * m" > strd_totad * e3t </field>
+ <field id="ttrd_ldf_e3t" unit="degC/s * m" > ttrd_ldf * e3t </field>
+ <field id="strd_ldf_e3t" unit="1e-3/s * m" > strd_ldf * e3t </field>
+ <field id="ttrd_zdf_e3t" unit="degC/s * m" > ttrd_zdf * e3t </field>
+ <field id="strd_zdf_e3t" unit="1e-3/s * m" > strd_zdf * e3t </field>
+ <field id="ttrd_evd_e3t" unit="degC/s * m" > ttrd_evd * e3t </field>
+ <field id="strd_evd_e3t" unit="1e-3/s * m" > strd_evd * e3t </field>
+
+ <!-- ln_traldf_iso=T only (iso-neutral diffusion) -->
+ <field id="ttrd_iso_e3t" unit="degC/s * m" > ttrd_iso * e3t </field>
+ <field id="strd_iso_e3t" unit="1e-3/s * m" > strd_iso * e3t </field>
+ <field id="ttrd_zdfp_e3t" unit="degC/s * m" > ttrd_zdfp * e3t </field>
+ <field id="strd_zdfp_e3t" unit="1e-3/s * m" > strd_zdfp * e3t </field>
+
+ <!-- -->
+ <field id="ttrd_dmp_e3t" unit="degC/s * m" > ttrd_dmp * e3t </field>
+ <field id="strd_dmp_e3t" unit="1e-3/s * m" > strd_dmp * e3t </field>
+ <field id="ttrd_bbl_e3t" unit="degC/s * m" > ttrd_bbl * e3t </field>
+ <field id="strd_bbl_e3t" unit="1e-3/s * m" > strd_bbl * e3t </field>
+ <field id="ttrd_npc_e3t" unit="degC/s * m" > ttrd_npc * e3t </field>
+ <field id="strd_npc_e3t" unit="1e-3/s * m" > strd_npc * e3t </field>
+ <field id="ttrd_qns_e3t" unit="degC/s * m" > ttrd_qns * e3t_surf </field>
+ <field id="strd_cdt_e3t" unit="degC/s * m" > strd_cdt * e3t_surf </field>
+ <field id="ttrd_qsr_e3t" unit="degC/s * m" > ttrd_qsr * e3t </field>
+ <field id="ttrd_bbc_e3t" unit="degC/s * m" > ttrd_bbc * e3t </field>
+
+ <!-- OMIP layer-integrated trends -->
+ <field id="ttrd_totad_li" long_name="layer integrated heat-trend : total advection" unit="W/m^2" > ttrd_totad_e3t * 1026.0 * 3991.86795711963 </field>
+ <field id="strd_totad_li" long_name="layer integrated salt -trend : total advection" unit="kg/(m^2 s)" > strd_totad_e3t * 1026.0 * 0.001 </field>
+ <field id="ttrd_evd_li" long_name="layer integrated heat-trend : EVD convection" unit="W/m^2" > ttrd_evd_e3t * 1026.0 * 3991.86795711963 </field>
+ <field id="strd_evd_li" long_name="layer integrated salt -trend : EVD convection" unit="kg/(m^2 s)" > strd_evd_e3t * 1026.0 * 0.001 </field>
+ <field id="ttrd_iso_li" long_name="layer integrated heat-trend : isopycnal diffusion" unit="W/m^2" > ttrd_iso_e3t * 1026.0 * 3991.86795711963 </field>
+ <field id="strd_iso_li" long_name="layer integrated salt -trend : isopycnal diffusion" unit="kg/(m^2 s)" > strd_iso_e3t * 1026.0 * 0.001 </field>
+ <field id="ttrd_zdfp_li" long_name="layer integrated heat-trend : pure vert. diffusion" unit="W/m^2" > ttrd_zdfp_e3t * 1026.0 * 3991.86795711963 </field>
+ <field id="strd_zdfp_li" long_name="layer integrated salt -trend : pure vert. diffusion" unit="kg/(m^2 s)" > strd_zdfp_e3t * 1026.0 * 0.001 </field>
+ <field id="ttrd_qns_li" long_name="layer integrated heat-trend : non-solar flux + runoff" unit="W/m^2" grid_ref="grid_T_2D"> ttrd_qns_e3t * 1026.0 * 3991.86795711963 </field>
+ <field id="ttrd_qsr_li" long_name="layer integrated heat-trend : solar flux" unit="W/m^2" grid_ref="grid_T_3D"> ttrd_qsr_e3t * 1026.0 * 3991.86795711963 </field>
+ <field id="ttrd_bbl_li" long_name="layer integrated heat-trend: bottom boundary layer " unit="W/m^2" > ttrd_bbl_e3t * 1026.0 * 3991.86795711963 </field>
+ <field id="strd_bbl_li" long_name="layer integrated salt -trend: bottom boundary layer " unit="kg/(m^2 s)" > strd_bbl_e3t * 1026.0 * 0.001 </field>
+ <field id="ttrd_evd_li" long_name="layer integrated heat -trend: evd convection " unit="W/m^2" >ttrd_evd_e3t * 1026.0 * 3991.86795711963 </field>
+ <field id="strd_evd_li" long_name="layer integrated salt -trend: evd convection " unit="kg/(m^2 s)" > strd_evd_e3t * 1026.0 * 0.001 </field>
+
+ </field_group>
+
+ <!-- Total trends calculated every time step-->
+ <field_group id="trendT" grid_ref="grid_T_3D">
+ <field id="ttrd_tot" long_name="temperature-trend: total model trend" unit="degC/s" />
+ <field id="strd_tot" long_name="salinity -trend: total model trend" unit="1e-3/s" />
+ <!-- Thickness weighted versions: -->
+ <field id="ttrd_tot_e3t" unit="degC/s * m" > ttrd_tot * e3t </field>
+ <field id="strd_tot_e3t" unit="1e-3/s * m" > strd_tot * e3t </field>
+ <!-- OMIP layer-integrated total trends -->
+ <field id="ttrd_tot_li" long_name="layer integrated heat-trend: total model trend :" unit="W/m^2" > ttrd_tot_e3t * 1026.0 * 3991.86795711963 </field>
+ <field id="strd_tot_li" long_name="layer integrated salt -trend: total model trend :" unit="kg/(m^2 s)" > strd_tot_e3t * 1026.0 * 0.001 </field>
+
+ <!-- **** these trends have not been apportioned to all/even/odd ts yet **** -->
+ <!-- variables available with ln_KE_trd -->
+ <field id="ketrd_hpg" long_name="ke-trend: hydrostatic pressure gradient" unit="W/s^3" />
+ <field id="ketrd_spg" long_name="ke-trend: surface pressure gradient" unit="W/s^3" />
+ <field id="ketrd_spgexp" long_name="ke-trend: surface pressure gradient (explicit)" unit="W/s^3" />
+ <field id="ketrd_spgflt" long_name="ke-trend: surface pressure gradient (filter)" unit="W/s^3" />
+ <field id="ssh_flt" long_name="filtered contribution to ssh (dynspg_flt)" unit="m" grid_ref="grid_T_2D" />
+ <field id="w0" long_name="surface vertical velocity" unit="m/s" grid_ref="grid_T_2D" />
+ <field id="pw0_exp" long_name="surface pressure flux due to ssh" unit="W/s^2" grid_ref="grid_T_2D" />
+ <field id="pw0_flt" long_name="surface pressure flux due to filtered ssh" unit="W/s^2" grid_ref="grid_T_2D" />
+ <field id="ketrd_keg" long_name="ke-trend: KE gradient or hor. adv." unit="W/s^3" />
+ <field id="ketrd_rvo" long_name="ke-trend: relative vorticity or metric term" unit="W/s^3" />
+ <field id="ketrd_pvo" long_name="ke-trend: planetary vorticity" unit="W/s^3" />
+ <field id="ketrd_zad" long_name="ke-trend: vertical advection" unit="W/s^3" />
+ <field id="ketrd_udx" long_name="ke-trend: U.dx[U]" unit="W/s^3" />
+ <field id="ketrd_ldf" long_name="ke-trend: lateral diffusion" unit="W/s^3" />
+ <field id="ketrd_zdf" long_name="ke-trend: vertical diffusion" unit="W/s^3" />
+ <field id="ketrd_tau" long_name="ke-trend: wind stress " unit="W/s^3" grid_ref="grid_T_2D" />
+ <field id="ketrd_bfr" long_name="ke-trend: bottom friction (explicit)" unit="W/s^3" />
+ <field id="ketrd_bfri" long_name="ke-trend: bottom friction (implicit)" unit="W/s^3" />
+ <field id="ketrd_atf" long_name="ke-trend: asselin time filter trend" unit="W/s^3" />
+ <field id="ketrd_convP2K" long_name="ke-trend: conversion (potential to kinetic)" unit="W/s^3" />
+ <field id="KE" long_name="kinetic energy: u(n)*u(n+1)/2" unit="W/s^2" />
+
+ <!-- variables available with ln_PE_trd -->
+ <field id="petrd_xad" long_name="pe-trend: i-advection" unit="W/m^3" />
+ <field id="petrd_yad" long_name="pe-trend: j-advection" unit="W/m^3" />
+ <field id="petrd_zad" long_name="pe-trend: k-advection" unit="W/m^3" />
+ <field id="petrd_sad" long_name="pe-trend: surface adv. (linssh true)" unit="W/m^3" grid_ref="grid_T_2D" />
+ <field id="petrd_ldf" long_name="pe-trend: lateral diffusion" unit="W/m^3" />
+ <field id="petrd_zdf" long_name="pe-trend: vertical diffusion" unit="W/m^3" />
+ <field id="petrd_zdfp" long_name="pe-trend: pure vert. diffusion" unit="W/m^3" />
+ <field id="petrd_dmp" long_name="pe-trend: interior restoring" unit="W/m^3" />
+ <field id="petrd_bbl" long_name="pe-trend: bottom boundary layer" unit="W/m^3" />
+ <field id="petrd_npc" long_name="pe-trend: non-penetrative conv." unit="W/m^3" />
+ <field id="petrd_nsr" long_name="pe-trend: surface forcing + runoff" unit="W/m^3" />
+ <field id="petrd_qsr" long_name="pe-trend: solar penetr. heating" unit="W/m^3" />
+ <field id="petrd_bbc" long_name="pe-trend: geothermal heating" unit="W/m^3" />
+ <field id="petrd_atf" long_name="pe-trend: asselin time filter" unit="W/m^3" />
+ <field id="PEanom" long_name="potential energy anomaly" unit="1" />
+ <field id="alphaPE" long_name="partial deriv. of PEanom wrt T" unit="degC-1" />
+ <field id="betaPE" long_name="partial deriv. of PEanom wrt S" unit="1e3" />
+ </field_group>
+
+ <field_group id="trendU" grid_ref="grid_U_3D">
+ <!-- variables available with ln_dyn_trd -->
+ <field id="utrd_hpg" long_name="i-trend: hydrostatic pressure gradient" unit="m/s^2" />
+ <field id="utrd_spg" long_name="i-trend: surface pressure gradient" unit="m/s^2" />
+ <field id="utrd_spgexp" long_name="i-trend: surface pressure gradient (explicit)" unit="m/s^2" />
+ <field id="utrd_spgflt" long_name="i-trend: surface pressure gradient (filtered)" unit="m/s^2" />
+ <field id="utrd_keg" long_name="i-trend: KE gradient or hor. adv." unit="m/s^2" />
+ <field id="utrd_rvo" long_name="i-trend: relative vorticity or metric term" unit="m/s^2" />
+ <field id="utrd_pvo" long_name="i-trend: planetary vorticity" unit="m/s^2" />
+ <field id="utrd_zad" long_name="i-trend: vertical advection" unit="m/s^2" />
+ <field id="utrd_udx" long_name="i-trend: U.dx[U]" unit="m/s^2" />
+ <field id="utrd_ldf" long_name="i-trend: lateral diffusion" unit="m/s^2" />
+ <field id="utrd_zdf" long_name="i-trend: vertical diffusion" unit="m/s^2" />
+ <field id="utrd_tau" long_name="i-trend: wind stress " unit="m/s^2" grid_ref="grid_U_2D" />
+ <field id="utrd_bfr" long_name="i-trend: bottom friction (explicit)" unit="m/s^2" />
+ <field id="utrd_bfri" long_name="i-trend: bottom friction (implicit)" unit="m/s^2" />
+ <field id="utrd_tot" long_name="i-trend: total momentum trend before atf" unit="m/s^2" />
+ <field id="utrd_atf" long_name="i-trend: asselin time filter trend" unit="m/s^2" />
+ </field_group>
+
+ <field_group id="trendV" grid_ref="grid_V_3D">
+ <!-- variables available with ln_dyn_trd -->
+ <field id="vtrd_hpg" long_name="j-trend: hydrostatic pressure gradient" unit="m/s^2" />
+ <field id="vtrd_spg" long_name="j-trend: surface pressure gradient" unit="m/s^2" />
+ <field id="vtrd_spgexp" long_name="j-trend: surface pressure gradient (explicit)" unit="m/s^2" />
+ <field id="vtrd_spgflt" long_name="j-trend: surface pressure gradient (filtered)" unit="m/s^2" />
+ <field id="vtrd_keg" long_name="j-trend: KE gradient or hor. adv." unit="m/s^2" />
+ <field id="vtrd_rvo" long_name="j-trend: relative vorticity or metric term" unit="m/s^2" />
+ <field id="vtrd_pvo" long_name="j-trend: planetary vorticity" unit="m/s^2" />
+ <field id="vtrd_zad" long_name="j-trend: vertical advection" unit="m/s^2" />
+ <field id="vtrd_vdy" long_name="i-trend: V.dx[V]" unit="m/s^2" />
+ <field id="vtrd_ldf" long_name="j-trend: lateral diffusion" unit="m/s^2" />
+ <field id="vtrd_zdf" long_name="j-trend: vertical diffusion" unit="m/s^2" />
+ <field id="vtrd_tau" long_name="j-trend: wind stress " unit="m/s^2" grid_ref="grid_V_2D" />
+ <field id="vtrd_bfr" long_name="j-trend: bottom friction (explicit)" unit="m/s^2" />
+ <field id="vtrd_bfri" long_name="j-trend: bottom friction (implicit)" unit="m/s^2" />
+ <field id="vtrd_tot" long_name="j-trend: total momentum trend before atf" unit="m/s^2" />
+ <field id="vtrd_atf" long_name="j-trend: asselin time filter trend" unit="m/s^2" />
+ </field_group>
+
+
+ <!--
+============================================================================================================
+ Definitions for iodef_demo.xml
+============================================================================================================
+ -->
+
+ <field_group id="TRD" >
+ <field field_ref="ttrd_totad_li" name="opottempadvect" />
+ <field field_ref="ttrd_iso_li" name="opottemppmdiff" />
+ <field field_ref="ttrd_zdfp_li" name="opottempdiff" />
+ <field field_ref="ttrd_evd_li" name="opottempevd" />
+ <field field_ref="strd_evd_li" name="osaltevd" />
+ <field field_ref="ttrd_qns_li" name="opottempqns" />
+ <field field_ref="ttrd_qsr_li" name="rsdoabsorb" operation="accumulate" />
+ <field field_ref="strd_totad_li" name="osaltadvect" />
+ <field field_ref="strd_iso_li" name="osaltpmdiff" />
+ <field field_ref="strd_zdfp_li" name="osaltdiff" />
+ </field_group>
+
+ <field_group id="mooring" >
+ <field field_ref="toce" name="thetao" long_name="sea_water_potential_temperature" />
+ <field field_ref="soce" name="so" long_name="sea_water_salinity" />
+ <field field_ref="uoce" name="uo" long_name="sea_water_x_velocity" />
+ <field field_ref="voce" name="vo" long_name="sea_water_y_velocity" />
+ <field field_ref="woce" name="wo" long_name="sea_water_z_velocity" />
+ <field field_ref="avt" name="difvho" long_name="ocean_vertical_heat_diffusivity" />
+ <field field_ref="avm" name="difvmo" long_name="ocean_vertical_momentum_diffusivity" />
+
+ <field field_ref="sst" name="tos" long_name="sea_surface_temperature" />
+ <field field_ref="sst2" name="tossq" long_name="square_of_sea_surface_temperature" />
+ <field field_ref="sstgrad" name="tosgrad" long_name="module_of_sea_surface_temperature_gradient" />
+ <field field_ref="sss" name="sos" long_name="sea_surface_salinity" />
+ <field field_ref="ssh" name="zos" long_name="sea_surface_height_above_geoid" />
+ <field field_ref="empmr" name="wfo" long_name="water_flux_into_sea_water" />
+ <field field_ref="qsr" name="rsntds" long_name="surface_net_downward_shortwave_flux" />
+ <field field_ref="qt" name="tohfls" long_name="surface_net_downward_total_heat_flux" />
+ <field field_ref="taum" />
+ <field field_ref="20d" />
+ <field field_ref="mldkz5" />
+ <field field_ref="mldr10_1" />
+ <field field_ref="mldr10_3" />
+ <field field_ref="mldr0_1" />
+ <field field_ref="mldr0_3" />
+ <field field_ref="mld_dt02" />
+ <field field_ref="topthdep" />
+ <field field_ref="pycndep" />
+ <field field_ref="tinv" />
+ <field field_ref="depti" />
+ <field field_ref="BLT" name="blt" long_name="barrier_layer_thickness" />
+ <field field_ref="utau" name="tauuo" long_name="surface_downward_x_stress" />
+ <field field_ref="vtau" name="tauvo" long_name="surface_downward_y_stress" />
+ </field_group>
+
+ <field_group id="groupT" >
+ <field field_ref="toce" name="thetao" long_name="sea_water_potential_temperature" />
+ <field field_ref="soce" name="so" long_name="sea_water_salinity" />
+ <field field_ref="sst" name="tos" long_name="sea_surface_temperature" />
+ <field field_ref="sst2" name="tossq" long_name="square_of_sea_surface_temperature" />
+ <field field_ref="sss" name="sos" long_name="sea_surface_salinity" />
+ <field field_ref="ssh" name="zos" long_name="sea_surface_height_above_geoid" />
+ <field field_ref="empmr" name="wfo" long_name="water_flux_into_sea_water" />
+ <field field_ref="qsr" name="rsntds" long_name="surface_net_downward_shortwave_flux" />
+ <field field_ref="qt" name="tohfls" long_name="surface_net_downward_total_heat_flux" />
+ <field field_ref="taum" />
+ <field field_ref="20d" />
+ <field field_ref="mldkz5" />
+ <field field_ref="mldr10_1" />
+ <field field_ref="mldr10_3" />
+ <field field_ref="mld_dt02" />
+ <field field_ref="topthdep" />
+ <field field_ref="pycndep" />
+ <field field_ref="tinv" />
+ <field field_ref="depti" />
+ <field field_ref="BLT" name="blt" long_name="Barrier Layer Thickness" />
+ </field_group>
+
+ <field_group id="groupU" >
+ <field field_ref="uoce" name="uo" long_name="sea_water_x_velocity" />
+ <field field_ref="ssu" name="uos" long_name="sea_surface_x_velocity" />
+ <field field_ref="utau" name="tauuo" long_name="surface_downward_x_stress" />
+ </field_group>
+
+ <field_group id="groupV" >
+ <field field_ref="voce" name="vo" long_name="sea_water_y_velocity" />
+ <field field_ref="ssv" name="vos" long_name="sea_surface_y_velocity" />
+ <field field_ref="vtau" name="tauvo" long_name="surface_downward_y_stress" />
+ </field_group>
+
+ <field_group id="groupW" >
+ <field field_ref="woce" name="wo" long_name="ocean vertical velocity" />
+ </field_group>
+
+ <!-- TMB diagnostic output -->
+ <field_group id="1h_grid_T_tmb" grid_ref="grid_T_2D" operation="instant">
+ <field id="top_temp" name="votemper_top" unit="degC" />
+ <field id="mid_temp" name="votemper_mid" unit="degC" />
+ <field id="bot_temp" name="votemper_bot" unit="degC" />
+ <field id="top_sal" name="vosaline_top" unit="psu" />
+ <field id="mid_sal" name="vosaline_mid" unit="psu" />
+ <field id="bot_sal" name="vosaline_bot" unit="psu" />
+ <field id="sshnmasked" name="sossheig" unit="m" />
+ </field_group>
+
+ <field_group id="1h_grid_U_tmb" grid_ref="grid_U_2D" operation="instant">
+ <field id="top_u" name="vozocrtx_top" unit="m/s" />
+ <field id="mid_u" name="vozocrtx_mid" unit="m/s" />
+ <field id="bot_u" name="vozocrtx_bot" unit="m/s" />
+ <field id="baro_u" name="vobtcrtx" unit="m/s" />
+ </field_group>
+
+ <field_group id="1h_grid_V_tmb" grid_ref="grid_V_2D" operation="instant">
+ <field id="top_v" name="vomecrty_top" unit="m/s" />
+ <field id="mid_v" name="vomecrty_mid" unit="m/s" />
+ <field id="bot_v" name="vomecrty_bot" unit="m/s" />
+ <field id="baro_v" name="vobtcrty" unit="m/s" />
+ </field_group>
+
+ <!-- 25h diagnostic output -->
+ <field_group id="25h_grid_T" grid_ref="grid_T_3D" operation="instant">
+ <field id="temper25h" name="potential temperature 25h mean" unit="degC" />
+ <field id="tempis25h" name="insitu temperature 25h mean" unit="degC" />
+ <field id="salin25h" name="salinity 25h mean" unit="psu" />
+ <field id="ssh25h" name="sea surface height 25h mean" grid_ref="grid_T_2D" unit="m" />
+ </field_group>
+
+ <field_group id="25h_grid_U" grid_ref="grid_U_3D" operation="instant" >
+ <field id="vozocrtx25h" name="i current 25h mean" unit="m/s" />
+ </field_group>
+
+ <field_group id="25h_grid_V" grid_ref="grid_V_3D" operation="instant">
+ <field id="vomecrty25h" name="j current 25h mean" unit="m/s" />
+ </field_group>
+
+ <field_group id="25h_grid_W" grid_ref="grid_W_3D" operation="instant">
+ <field id="vomecrtz25h" name="k current 25h mean" unit="m/s" />
+ <field id="avt25h" name="vertical diffusivity25h mean" unit="m2/s" />
+ <field id="avm25h" name="vertical viscosity 25h mean" unit="m2/s" />
+ <field id="tke25h" name="turbulent kinetic energy 25h mean" />
+ <field id="mxln25h" name="mixing length 25h mean" unit="m" />
+ </field_group>
+
+ <!--
+============================================================================================================
+ -->
+ <!-- output variables for my configuration (example) -->
+
+ <field_group id="myvarOCE" >
+ <!-- grid T -->
+ <field field_ref="e3t" name="e3t" long_name="vertical scale factor" />
+ <field field_ref="sst" name="tos" long_name="sea_surface_temperature" />
+ <field field_ref="sss" name="sos" long_name="sea_surface_salinity" />
+ <field field_ref="ssh" name="zos" long_name="sea_surface_height_above_geoid" />
+
+ <!-- grid U -->
+ <field field_ref="e3u" name="e3u" long_name="vertical scale factor" />
+ <field field_ref="ssu" name="uos" long_name="sea_surface_x_velocity" />
+
+ <!-- grid V -->
+ <field field_ref="e3v" name="e3v" long_name="vertical scale factor" />
+ <field field_ref="ssv" name="vos" long_name="sea_surface_y_velocity" />
+ </field_group>
+
+ </field_definition>
diff --git a/EXP_Apr19/field_def_nemo-pisces.xml b/EXP_Apr19/field_def_nemo-pisces.xml
new file mode 100755
index 0000000..3642fec
--- /dev/null
+++ b/EXP_Apr19/field_def_nemo-pisces.xml
@@ -0,0 +1,298 @@
+<?xml version="1.0"?>
+ <!-- $id$ -->
+
+ <!--
+============================================================================================================
+= definition of all existing variables =
+= DO NOT CHANGE =
+============================================================================================================
+ -->
+ <field_definition level="1" prec="4" operation="average" enabled=".TRUE." default_value="1.e20" > <!-- time step automaticaly defined -->
+
+ <!--
+============================================================================================================
+ Biogeochemistry model variables
+============================================================================================================
+ -->
+
+ <!-- ptrc on T grid -->
+
+ <field_group id="ptrc_T" grid_ref="grid_T_3D">
+ <!-- PISCES standard : variables available with ln_p4z -->
+ <field id="DIC" long_name="Dissolved inorganic Concentration" unit="mmol/m3" />
+ <field id="DIC_e3t" long_name="DIC * e3t" unit="mmol/m2" > DIC * e3t </field >
+ <field id="Alkalini" long_name="Total Alkalinity Concentration" unit="mmol/m3" />
+ <field id="Alkalini_e3t" long_name="Alkalini * e3t" unit="mmol/m2" > Alkalini * e3t </field >
+ <field id="O2" long_name="Oxygen Concentration" unit="mmol/m3" />
+ <field id="O2_e3t" long_name="O2 * e3t" unit="mmol/m2" > O2 * e3t </field >
+ <field id="CaCO3" long_name="Calcite Concentration" unit="mmol/m3" />
+ <field id="CaCO3_e3t" long_name="CaCO3 * e3t" unit="mmol/m2" > CaCO3 * e3t </field >
+ <field id="PO4" long_name="Phosphate Concentration" unit="mmol/m3" />
+ <field id="PO4_e3t" long_name="PO4 * e3t" unit="mmol/m2" > PO4 * e3t </field >
+ <field id="POC" long_name="Small organic carbon Concentration" unit="mmol/m3" />
+ <field id="POC_e3t" long_name="POC * e3t" unit="mmol/m2" > POC * e3t </field >
+ <field id="Si" long_name="Silicate Concentration" unit="mmol/m3" />
+ <field id="Si_e3t" long_name="Si * e3t" unit="mmol/m2" > Si * e3t </field >
+ <field id="PHY" long_name="(Nano)Phytoplankton Concentration" unit="mmol/m3" />
+ <field id="PHY_e3t" long_name="PHY * e3t" unit="mmol/m2" > PHY * e3t </field >
+ <field id="ZOO" long_name="(Micro)Zooplankton Concentration" unit="mmol/m3" />
+ <field id="ZOO_e3t" long_name="ZOO2 * e3t" unit="mmol/m2" > ZOO * e3t </field >
+ <field id="DOC" long_name="Dissolved organic Concentration" unit="mmol/m3" />
+ <field id="DOC_e3t" long_name="DOC * e3t" unit="mmol/m2" > DOC * e3t </field >
+ <field id="PHY2" long_name="Diatoms Concentration" unit="mmol/m3" />
+ <field id="PHY2_e3t" long_name="PHY2 * e3t" unit="mmol/m2" > PHY2 * e3t </field >
+ <field id="ZOO2" long_name="Mesozooplankton Concentration" unit="mmol/m3" />
+ <field id="ZOO2_e3t" long_name="ZOO2 * e3t" unit="mmol/m2" > ZOO2 * e3t </field >
+ <field id="DSi" long_name="Diatoms Silicate Concentration" unit="mmol/m3" />
+ <field id="DSi_e3t" long_name="Dsi * e3t" unit="mmol/m2" > DSi * e3t </field >
+ <field id="Fer" long_name="Dissolved Iron Concentration" unit="mmol/m3" />
+ <field id="Fer_e3t" long_name="Fer * e3t" unit="mmol/m2" > Fer * e3t </field >
+ <field id="BFe" long_name="Big iron particles Concentration" unit="mmol/m3" />
+ <field id="BFe_e3t" long_name="BFe * e3t" unit="mmol/m2" > BFe * e3t </field >
+ <field id="GOC" long_name="Big organic carbon Concentration" unit="mmol/m3" />
+ <field id="GOC_e3t" long_name="GOC * e3t" unit="mmol/m2" > GOC * e3t </field >
+ <field id="SFe" long_name="Small iron particles Concentration" unit="mmol/m3" />
+ <field id="SFe_e3t" long_name="SFe * e3t" unit="mmol/m2" > SFe * e3t </field >
+ <field id="DFe" long_name="Diatoms iron Concentration" unit="mmol/m3" />
+ <field id="DFe_e3t" long_name="DFe * e3t" unit="mmol/m2" > DFe * e3t </field >
+ <field id="GSi" long_name="Sinking biogenic Silicate Concentration" unit="mmol/m3" />
+ <field id="GSi_e3t" long_name="GSi * e3t" unit="mmol/m2" > GSi * e3t </field >
+ <field id="NFe" long_name="Nano iron Concentration" unit="mmol/m3" />
+ <field id="NFe_e3t" long_name="NFe * e3t" unit="mmol/m2" > NFe * e3t </field >
+ <field id="NCHL" long_name="Nano chlorophyl Concentration" unit="mg/m3" />
+ <field id="NCHL_e3t" long_name="NCHL * e3t" unit="mmol/m2" > NCHL * e3t </field >
+ <field id="DCHL" long_name="Diatoms chlorophyl Concentration" unit="mg/m3" />
+ <field id="DCHL_e3t" long_name="DCHL * e3t" unit="mmol/m2" > DCHL * e3t </field >
+ <field id="NO3" long_name="Nitrate Concentration" unit="mmol/m3" />
+ <field id="NO3_e3t" long_name="NO3 * e3t" unit="mmol/m2" > NO3 * e3t </field >
+ <field id="NH4" long_name="Ammonium Concentration" unit="mmol/m3" />
+ <field id="NH4_e3t" long_name="NH4 * e3t" unit="mmol/m2" > NH4 * e3t </field >
+
+ <!-- PISCES quota : variables available with ln_p5z -->
+
+ <field id="DON" long_name="Dissolved organic N Concentration" unit="mmol/m3" />
+ <field id="DON_e3t" long_name="DON * e3t" unit="mmol/m2" > DON * e3t </field >
+ <field id="DOP" long_name="Dissolved organic P Concentration" unit="mmol/m3" />
+ <field id="DOP_e3t" long_name="DOP * e3t" unit="mmol/m2" > DOP * e3t </field >
+ <field id="PON" long_name="Small PON Concentration" unit="mmol/m3" />
+ <field id="PON_e3t" long_name="PON * e3t" unit="mmol/m2" > PON * e3t </field >
+ <field id="POP" long_name="Small POP Concentration" unit="mmol/m3" />
+ <field id="POP_e3t" long_name="POP * e3t" unit="mmol/m2" > POP * e3t </field >
+ <field id="GON" long_name="Big PON Concentration" unit="mmol/m3" />
+ <field id="GON_e3t" long_name="GON * e3t" unit="mmol/m2" > GON * e3t </field >
+ <field id="GOP" long_name="Big POP Concentration" unit="mmol/m3" />
+ <field id="GOP_e3t" long_name="GOP * e3t" unit="mmol/m2" > GOP * e3t </field >
+ <field id="PHYN" long_name="Nanophytoplankton N biomass" unit="mmol/m3" />
+ <field id="PHYN_e3t" long_name="PHYN * e3t" unit="mmol/m2" > PHYN * e3t </field >
+ <field id="PHYP" long_name="Nanophytoplankton P biomass" unit="mmol/m3" />
+ <field id="PHYP_e3t" long_name="PHYP * e3t" unit="mmol/m2" > PHYP * e3t </field >
+ <field id="DIAN" long_name="Diatoms N biomass" unit="mmol/m3" />
+ <field id="DIAN_e3t" long_name="DIAN * e3t" unit="mmol/m2" > DIAN * e3t </field >
+ <field id="DIAP" long_name="Diatoms P biomass" unit="mmol/m3" />
+ <field id="DIAP_e3t" long_name="DIAP * e3t" unit="mmol/m2" > DIAP * e3t </field >
+ <field id="PIC" long_name="Picophytoplankton C biomass" unit="mmol/m3" />
+ <field id="PIC_e3t" long_name="PIC * e3t" unit="mmol/m2" > PIC * e3t </field >
+ <field id="PICN" long_name="Picophytoplankton N biomass" unit="mmol/m3" />
+ <field id="PICN_e3t" long_name="PICN * e3t" unit="mmol/m2" > PICN * e3t </field >
+ <field id="PICP" long_name="Picophytoplankton P biomass" unit="mmol/m3" />
+ <field id="PICP_e3t" long_name="PICP * e3t" unit="mmol/m2" > PICP * e3t </field >
+ <field id="PFe" long_name="Picophytoplankton Fe biomass" unit="mmol/m3" />
+ <field id="PFe_e3t" long_name="PFe * e3t" unit="mmol/m2" > PFe * e3t </field >
+ <field id="PCHL" long_name="Picophytoplankton Chl biomass" unit="mg/m3" />
+ <field id="PCHL_e3t" long_name="PCHL * e3t" unit="mmol/m2" > PCHL * e3t </field >
+
+ <!-- PISCES with ligand parametisation : variables available namelist paramter ln_ligand -->
+ <field id="LGW" long_name="Weak ligands concentration" unit="mmol/m3" />
+ <field id="LGW_e3t" long_name="LGW * e3t" unit="mmol/m2" > LGW * e3t </field >
+ <field id="LFe" long_name="Lithogenic iron concentration" unit="mmol/m3" />
+ <field id="LFe_e3t" long_name="LFe * e3t" unit="mmol/m2" > LFe * e3t </field >
+
+ <!-- PISCES light : variables available with ln_p2z -->
+ <field id="DET" long_name="Detritus" unit="mmol-N/m3" />
+ <field id="DET_e3t" long_name="DET * e3t" unit="mmol-N/m2" > DET * e3t </field >
+ <field id="DOM" long_name="Dissolved Organic Matter" unit="mmol-N/m3" />
+ <field id="DOM_e3t" long_name="DOM * e3t" unit="mmol-N/m2" > DOM * e3t </field >
+
+ <!-- CFC11 : variables available with ln_cfc11 -->
+ <field id="CFC11" long_name="Chlorofluoro carbon11 Concentration" unit="umol/m3" />
+ <field id="CFC11_e3t" long_name="CFC11 * e3t" unit="umol/m2" > CFC11 * e3t </field >
+
+ <!-- CFC12 : variables available with ln_cfc12 -->
+ <field id="CFC12" long_name="Chlorofluoro carbon12 Concentration" unit="umol/m3" />
+ <field id="CFC12_e3t" long_name="CFC12 * e3t" unit="umol/m2" > CFC12 * e3t </field >
+
+ <!-- SF6 : variables available with ln_sf6 -->
+ <field id="SF6" long_name="Sulfur hexafluoride Concentration" unit="umol/m3" />
+ <field id="SF6_e3t" long_name="SF6 * e3t" unit="umol/m2" > SF6 * e3t </field >
+
+ <!-- C14 : variables available with ln_c14 -->
+ <field id="RC14" long_name="Radiocarbon ratio" unit="-" />
+ <field id="RC14_e3t" long_name="RC14 * e3t" unit="m" > RC14 * e3t </field >
+
+ <!-- AGE : variables available with ln_age -->
+ <field id="Age" long_name="Sea water age since surface contact" unit="yr" />
+ <field id="Age_e3t" long_name="Age * e3t" unit="yr * m" > Age * e3t </field >
+
+ </field_group>
+
+ <!-- PISCES additional diagnostics on T grid -->
+
+ <field_group id="diad_T" grid_ref="grid_T_2D">
+ <field id="PH" long_name="PH" unit="1" grid_ref="grid_T_3D" />
+ <field id="CO3" long_name="Bicarbonates" unit="mol/m3" grid_ref="grid_T_3D" />
+ <field id="CO3sat" long_name="CO3 saturation" unit="mol/m3" grid_ref="grid_T_3D" />
+ <field id="PAR" long_name="Photosynthetically Available Radiation" unit="W/m2" grid_ref="grid_T_3D" />
+ <field id="PARDM" long_name="Daily mean PAR" unit="W/m2" grid_ref="grid_T_3D" />
+ <field id="PPPHYN" long_name="Primary production of nanophyto" unit="molC/m3/s" grid_ref="grid_T_3D" />
+ <field id="PPPHYP" long_name="Primary production of picophyto" unit="molC/m3/s" grid_ref="grid_T_3D" />
+ <field id="PPPHYD" long_name="Primary production of diatoms" unit="molC/m3/s" grid_ref="grid_T_3D" />
+ <field id="PPNEWN" long_name="New Primary production of nanophyto" unit="molC/m3/s" grid_ref="grid_T_3D" />
+ <field id="PPNEWP" long_name="New Primary production of picophyto" unit="molC/m3/s" grid_ref="grid_T_3D" />
+ <field id="PPNEWD" long_name="New Primary production of diatoms" unit="molC/m3/s" grid_ref="grid_T_3D" />
+ <field id="PBSi" long_name="Primary production of Si diatoms" unit="molC/m3/s" grid_ref="grid_T_3D" />
+ <field id="PFeN" long_name="Primary production of nano iron" unit="molC/m3/s" grid_ref="grid_T_3D" />
+ <field id="PFeP" long_name="Primary production of pico iron" unit="molC/m3/s" grid_ref="grid_T_3D" />
+ <field id="PFeD" long_name="Primary production of diatoms iron" unit="mol/m3/s" grid_ref="grid_T_3D" />
+ <field id="xfracal" long_name="Calcifying fraction" unit="1" grid_ref="grid_T_3D" />
+ <field id="PCAL" long_name="Calcite production" unit="mol/m3/s" grid_ref="grid_T_3D" />
+ <field id="DCAL" long_name="Calcite dissolution" unit="mol/m3/s" grid_ref="grid_T_3D" />
+ <field id="GRAZ1" long_name="Grazing by microzooplankton" unit="mol/m3/s" grid_ref="grid_T_3D" />
+ <field id="GRAZ2" long_name="Grazing by mesozooplankton" unit="mol/m3/s" grid_ref="grid_T_3D" />
+ <field id="REMIN" long_name="Oxic remineralization of OM" unit="mol/m3/s" grid_ref="grid_T_3D" />
+ <field id="DENIT" long_name="Anoxic remineralization of OM" unit="mol/m3/s" grid_ref="grid_T_3D" />
+ <field id="REMINP" long_name="Oxic remineralization rate of POC" unit="d-1" grid_ref="grid_T_3D" />
+ <field id="REMING" long_name="Oxic remineralization rate of GOC" unit="d-1" grid_ref="grid_T_3D" />
+ <field id="Nfix" long_name="Nitrogen fixation" unit="mol/m3/s" grid_ref="grid_T_3D" />
+ <field id="Mumax" long_name="Maximum growth rate" unit="s-1" grid_ref="grid_T_3D" />
+ <field id="MuN" long_name="Realized growth rate for nanophyto" unit="s-1" grid_ref="grid_T_3D" />
+ <field id="MuP" long_name="Realized growth rate for picophyto" unit="s-1" grid_ref="grid_T_3D" />
+ <field id="MuD" long_name="Realized growth rate for diatomes" unit="s-1" grid_ref="grid_T_3D" />
+ <field id="MunetN" long_name="Net growth rate for nanophyto" unit="s-1" grid_ref="grid_T_3D" />
+ <field id="MunetP" long_name="Net growth rate for picophyto" unit="s-1" grid_ref="grid_T_3D" />
+ <field id="MunetD" long_name="Net growth rate for diatomes" unit="s-1" grid_ref="grid_T_3D" />
+ <field id="LNnut" long_name="Nutrient limitation term in Nanophyto" unit="" grid_ref="grid_T_3D" />
+ <field id="LPnut" long_name="Nutrient limitation term in Picophyto" unit="-" grid_ref="grid_T_3D" />
+ <field id="LDnut" long_name="Nutrient limitation term in Diatoms" unit="" grid_ref="grid_T_3D" />
+ <field id="LNFe" long_name="Iron limitation term in Nanophyto" unit="" grid_ref="grid_T_3D" />
+ <field id="LPFe" long_name="Iron limitation term in Picophyto" unit="-" grid_ref="grid_T_3D" />
+ <field id="LDFe" long_name="Iron limitation term in Diatoms" unit="" grid_ref="grid_T_3D" />
+ <field id="LNlight" long_name="Light limitation term in Nanophyto" unit="" grid_ref="grid_T_3D" />
+ <field id="LPlight" long_name="Light limitation term in Picophyto" unit="-" grid_ref="grid_T_3D" />
+ <field id="LDlight" long_name="Light limitation term in Diatoms" unit="" grid_ref="grid_T_3D" />
+ <field id="SIZEN" long_name="Mean relative size of nanophyto." unit="-" grid_ref="grid_T_3D" />
+ <field id="SIZEP" long_name="Mean relative size of picophyto." unit="-" grid_ref="grid_T_3D" />
+ <field id="SIZED" long_name="Mean relative size of diatoms" unit="-" grid_ref="grid_T_3D" />
+ <field id="Fe2" long_name="Iron II concentration" unit="nmol/m3" grid_ref="grid_T_3D" />
+ <field id="Fe3" long_name="Iron III concentration" unit="nmol/m3" grid_ref="grid_T_3D" />
+ <field id="FeL1" long_name="Complexed Iron concentration with L1" unit="nmol/m3" grid_ref="grid_T_3D" />
+ <field id="FeL2" long_name="Complexed Iron concentration with L2" unit="nmol/m3" grid_ref="grid_T_3D" />
+ <field id="FeP" long_name="Precipitated Iron III" unit="nmol/m3" grid_ref="grid_T_3D" />
+ <field id="TL1" long_name="Total L1 concentration" unit="nmol/m3" grid_ref="grid_T_3D" />
+ <field id="TL2" long_name="Total L2 concentration" unit="nmol/m3" grid_ref="grid_T_3D" />
+ <field id="pdust" long_name="dust concentration" unit="g/m3" />
+ <field id="Totlig" long_name="Total ligand concentation" unit="nmol/m3" grid_ref="grid_T_3D" />
+ <field id="Biron" long_name="Bioavailable iron" unit="nmol/m3" grid_ref="grid_T_3D" />
+ <field id="Sdenit" long_name="Nitrate reduction in the sediments" unit="mol/m2/s" />
+ <field id="Ironice" long_name="Iron input/uptake due to sea ice" unit="mol/m2/s" />
+ <field id="SedCal" long_name="Calcite burial in the sediments" unit="molC/m2/s" />
+ <field id="SedSi" long_name="Silicon burial in the sediments" unit="molSi/m2/s" />
+ <field id="SedC" long_name="Organic C burial in the sediments" unit="molC/m2/s" />
+ <field id="HYDR" long_name="Iron input from hydrothemal vents" unit="mol/m2/s" grid_ref="grid_T_3D" />
+ <field id="EPC100" long_name="Export of carbon particles at 100 m" unit="mol/m2/s" />
+ <field id="EPFE100" long_name="Export of biogenic iron at 100 m" unit="mol/m2/s" />
+ <field id="EPSI100" long_name="Export of Silicate at 100 m" unit="mol/m2/s" />
+ <field id="EPCAL100" long_name="Export of Calcite at 100 m" unit="mol/m2/s" />
+ <field id="EXPC" long_name="Export of carbon" unit="mol/m2/s" grid_ref="grid_T_3D" />
+ <field id="EXPFE" long_name="Export of biogenic iron" unit="mol/m2/s" grid_ref="grid_T_3D" />
+ <field id="EXPSI" long_name="Export of Silicate" unit="mol/m2/s" grid_ref="grid_T_3D" />
+ <field id="EXPCAL" long_name="Export of Calcite" unit="mol/m2/s" grid_ref="grid_T_3D" />
+ <field id="Cflx" long_name="DIC flux" unit="mol/m2/s" />
+ <field id="Oflx" long_name="Oxygen flux" unit="mol/m2/s" />
+ <field id="Kg" long_name="Gas transfer" unit="mol/m2/s/uatm" />
+ <field id="Dpco2" long_name="Delta CO2" unit="uatm" />
+ <field id="Dpo2" long_name="Delta O2" unit="uatm" />
+ <field id="Heup" long_name="Euphotic layer depth" unit="m" />
+ <field id="Irondep" long_name="Iron deposition from dust" unit="mol/m2/s" />
+ <field id="Ironsed" long_name="Iron deposition from sediment" unit="mol/m2/s" grid_ref="grid_T_3D" />
+
+ <!-- dbio_T on T grid : variables available with diaar5 -->
+ <field id="TPP" long_name="Total Primary production of phyto" unit="mol/m3/s" grid_ref="grid_T_3D" />
+ <field id="TPNEW" long_name="New Primary production of phyto" unit="mol/m3/s" grid_ref="grid_T_3D" />
+ <field id="TPBFE" long_name="Total biogenic iron production" unit="mol/m3/s" grid_ref="grid_T_3D" />
+ <field id="INTDIC" long_name="DIC content" unit="kg/m2" />
+ <field id="O2MIN" long_name="Oxygen minimum concentration" unit="mol/m3" />
+ <field id="ZO2MIN" long_name="Depth of oxygen minimum concentration" unit="m" />
+ <field id="INTNFIX" long_name="Nitrogen fixation rate : vert. integrated" unit="mol/m2/s" />
+ <field id="INTPPPHYN" long_name="Vertically integrated primary production by nanophy" unit="mol/m2/s" />
+ <field id="INTPPPHYD" long_name="Vertically integrated primary production by diatom" unit="mol/m2/s" />
+ <field id="INTPP" long_name="Vertically integrated primary production by phyto" unit="mol/m2/s" />
+ <field id="INTPNEW" long_name="Vertically integrated new primary production" unit="mol/m2/s" />
+ <field id="INTPBFE" long_name="Vertically integrated of biogenic iron production" unit="mol/m2/s" />
+ <field id="INTPBSI" long_name="Vertically integrated of biogenic Si production" unit="mol/m2/s" />
+ <field id="INTPCAL" long_name="Vertically integrated of calcite production" unit="mol/m2/s" />
+
+ <!-- PISCES light : variables available with key_pisces_reduced -->
+ <field id="FNO3PHY" long_name="FNO3PHY" unit="" grid_ref="grid_T_3D" />
+ <field id="FNH4PHY" long_name="FNH4PHY" unit="" grid_ref="grid_T_3D" />
+ <field id="FNH4NO3" long_name="FNH4NO3" unit="" grid_ref="grid_T_3D" />
+ <field id="TNO3PHY" long_name="TNO3PHY" unit="" />
+ <field id="TNH4PHY" long_name="TNH4PHY" unit="" />
+ <field id="TPHYDOM" long_name="TPHYDOM" unit="" />
+ <field id="TPHYNH4" long_name="TPHYNH4" unit="" />
+ <field id="TPHYZOO" long_name="TPHYZOO" unit="" />
+ <field id="TPHYDET" long_name="TPHYDET" unit="" />
+ <field id="TDETZOO" long_name="TDETZOO" unit="" />
+ <field id="TZOODET" long_name="TZOODET" unit="" />
+ <field id="TZOOBOD" long_name="TZOOBOD" unit="" />
+ <field id="TZOONH4" long_name="TZOONH4" unit="" />
+ <field id="TZOODOM" long_name="TZOODOM" unit="" />
+ <field id="TNH4NO3" long_name="TNH4NO3" unit="" />
+ <field id="TDOMNH4" long_name="TDOMNH4" unit="" />
+ <field id="TDETNH4" long_name="TDETNH4" unit="" />
+ <field id="TPHYTOT" long_name="TPHYTOT" unit="" />
+ <field id="TZOOTOT" long_name="TZOOTOT" unit="" />
+ <field id="SEDPOC" long_name="SEDPOC" unit="" />
+ <field id="TDETSED" long_name="TDETSED" unit="" />
+
+ <!-- CFC11 : variables available with ln_cfc11 -->
+ <field id="qtr_CFC11" long_name="Air-sea flux of CFC-11" unit="mol/m2/s" />
+ <field id="qint_CFC11" long_name="Cumulative air-sea flux of CFC-11" unit="mol/m2" />
+
+ <!-- CFC12 : variables available with ln_cfc12 -->
+ <field id="qtr_CFC12" long_name="Air-sea flux of CFC12" unit="mol/m2/s" />
+ <field id="qint_CFC12" long_name="Cumulative air-sea flux of CFC12" unit="mol/m2" />
+
+ <!-- SF6 : variables available with ln_sf6 -->
+ <field id="qtr_SF6" long_name="Air-sea flux of SF6" unit="mol/m2/s" />
+ <field id="qint_SF6" long_name="Cumulative air-sea flux of SF6" unit="mol/m2" />
+
+ <!-- C14 : variables available with ln_c14 -->
+ <field id="DeltaC14" long_name="Delta C14" unit="permil" grid_ref="grid_T_3D" />
+ <field id="C14Age" long_name="Radiocarbon age" unit="yr" grid_ref="grid_T_3D" />
+ <field id="RAge" long_name="Reservoir Age" unit="yr" />
+ <field id="qtr_C14" long_name="Air-sea flux of C14" unit="1/m2/s" />
+ <field id="qint_C14" long_name="Cumulative air-sea flux of C14" unit="1/m2" />
+ </field_group>
+
+ <field_group id="tracer_scalar" grid_ref="grid_T_2D" >
+ <!-- PISCES scalar -->
+ <field id="pno3tot" long_name="Global mean nitrate concentration" unit="mol/m3" />
+ <field id="ppo4tot" long_name="global mean phosphorus concentration" unit="mol/m3" />
+ <field id="psiltot" long_name="Global mean silicate concentration" unit="mol/m3" />
+ <field id="palktot" long_name="Global mean alkalinity concentration" unit="mol/m3" />
+ <field id="pfertot" long_name="Global mean iron concentration" unit="mol/m3" />
+ <field id="tcflx" long_name="Total Flux of Carbon out of the ocean" unit="mol/s" />
+ <field id="tcflxcum" long_name="Cumulative total Flux of Carbon out of the ocean" unit="mol/s" />
+ <field id="tcexp" long_name="Total Carbon export at 100m" unit="mol/s" />
+ <field id="tintpp" long_name="Global total integrated primary production" unit="mol/s" />
+ <field id="tnfix" long_name="Global total nitrogen fixation" unit="mol/s" />
+ <field id="tdenit" long_name="Total denitrification" unit="mol/s" />
+ <!-- C14 scalar -->
+ <field id="AtmCO2" long_name="Global atmospheric CO2" unit="ppm" />
+ <field id="AtmC14" long_name="Global atmospheric DeltaC14" unit="permil" />
+ <field id="K_C14" long_name="Global 14C/C exchange velocity" unit="m/yr" />
+ <field id="K_CO2" long_name="Global CO2 piston velocity" unit="cm/h" />
+ <field id="C14Inv" long_name="global Radiocarbon ocean inventory" unit="10^26 atoms" />
+ </field_group>
+
+ </field_definition>
diff --git a/EXP_Apr19/file_def_nemo-opa.xml b/EXP_Apr19/file_def_nemo-opa.xml
new file mode 100755
index 0000000..0c76435
--- /dev/null
+++ b/EXP_Apr19/file_def_nemo-opa.xml
@@ -0,0 +1,55 @@
+<?xml version="1.0"?>
+
+ <!--
+============================================================================================================
+= output files definition =
+= Define your own files =
+= put the variables you want... =
+============================================================================================================
+ -->
+
+ <file_definition type="multiple_file" name="@expname@_@freq@_@startdate@_@enddate@" sync_freq="10d" min_digits="4">
+
+ <file_group id="15mi" output_freq="15mi" output_level="10" enabled=".TRUE." > <!-- 1 time step files -->
+ <file id="file1" name_suffix="_grid_T" description="ocean T grid variables" >
+ <field field_ref="ssh" name="zos" long_name="sea_surface_height_above_geoid" operation="instant" />
+ </file>
+
+ <file id="file2" name_suffix="_grid_U" description="ocean U grid variables" >
+ <field field_ref="ssu" name="uos" long_name="sea_water_surface_x_velocity" operation="instant" />
+ <field field_ref="uwnd" name="uwnd" long_name="u_component_of_wind" operation="instant" />
+ </file>
+
+ <file id="file3" name_suffix="_grid_V" description="ocean V grid variables" >
+ <field field_ref="ssv" name="vos" long_name="sea_water_surface_y_velocity" operation="instant" />
+ <field field_ref="vwnd" name="vwnd" long_name="v_component_of_wind" operation="instant" />
+ </file>
+
+ </file_group>
+
+
+
+ <file_group id="1h" output_freq="1h" output_level="10" enabled=".TRUE." />
+ <file_group id="2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
+ <file_group id="3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
+ <file_group id="4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
+ <file_group id="6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files -->
+ <file_group id="25h_mean" output_freq="1d" output_level="10" enabled=".TRUE."/>
+ <file_group id="1d" output_freq="1d" output_level="10" enabled=".TRUE."/> <!-- 1d files -->
+ <file_group id="3d" output_freq="3d" output_level="10" enabled=".TRUE."/> <!-- 3d files -->
+ <file_group id="5d" output_freq="5d" output_level="10" enabled=".TRUE."/> <!-- 5d files -->
+ <file_group id="1m" output_freq="1mo" output_level="10" enabled=".TRUE."/> <!-- real monthly files -->
+ <file_group id="2m" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
+ <file_group id="3m" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
+ <file_group id="4m" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
+ <file_group id="6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
+
+ <file_group id="1y" output_freq="1y" output_level="10" enabled=".TRUE."/> <!-- real yearly files -->
+ <file_group id="2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
+ <file_group id="5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
+ <file_group id="10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
+
+
+ </file_definition>
+
+
diff --git a/EXP_Apr19/file_def_nemo.xml b/EXP_Apr19/file_def_nemo.xml
new file mode 100755
index 0000000..cf06a03
--- /dev/null
+++ b/EXP_Apr19/file_def_nemo.xml
@@ -0,0 +1,151 @@
+<?xml version="1.0"?>
+
+ <!--
+============================================================================================================
+= output files definition =
+= Define your own files =
+= put the variables you want... =
+============================================================================================================
+ -->
+
+ <file_definition type="one_file" name="@expname@_@freq@_@startdate@_@enddate@" sync_freq="10d" min_digits="4">
+
+ <file_group id="1ts" output_freq="1ts" output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
+
+ <file_group id="1h" output_freq="1h" output_level="10" enabled=".TRUE."> <!-- 1h files -->
+ <file id="file19" name_suffix="_SSH" description="ocean T grid variables" >
+ <field field_ref="ssh" name="zos" />
+ <field field_ref="sst" name="tos" />
+ </file>
+ </file_group>
+
+ <file_group id="2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
+ <file_group id="3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
+ <file_group id="4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
+ <file_group id="6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files -->
+ <file_group id="1d" output_freq="1d" output_level="10" enabled=".TRUE."/> <!-- 1d files -->
+ <file_group id="3d" output_freq="3d" output_level="10" enabled=".TRUE."/> <!-- 3d files -->
+ <file_group id="5d" output_freq="5d" output_level="10" enabled=".TRUE."> <!-- 5d files -->
+
+ <file id="file20" name_suffix="_Tides" description="tidal harmonics" >
+ <field field_ref="M2x" name="M2x" long_name="M2 Elevation harmonic real part" />
+ <field field_ref="M2y" name="M2y" long_name="M2 Elevation harmonic imaginary part" />
+ <field field_ref="M2x_u" name="M2x_u" long_name="M2 current barotrope along i-axis harmonic real part " />
+ <field field_ref="M2y_u" name="M2y_u" long_name="M2 current barotrope along i-axis harmonic imaginary part " />
+ <field field_ref="M2x_v" name="M2x_v" long_name="M2 current barotrope along j-axis harmonic real part " />
+ <field field_ref="M2y_v" name="M2y_v" long_name="M2 current barotrope along j-axis harmonic imaginary part " />
+ </file>
+<!--
+ <file id="file11" name_suffix="_Tides_T" >
+ <field field_ref="M2x" name="M2_x_elev" />
+ <field field_ref="M2y" name="M2_y_elev" />
+ <field field_ref="S2x" name="S2_x_elev" />
+ <field field_ref="S2y" name="S2_y_elev" />
+ <field field_ref="N2x" name="N2_x_elev" />
+ <field field_ref="N2y" name="N2_y_elev" />
+ <field field_ref="K2x" name="K2_x_elev" />
+ <field field_ref="K2y" name="K2_y_elev" />
+ <field field_ref="K1x" name="K1_x_elev" />
+ <field field_ref="K1y" name="K1_y_elev" />
+ <field field_ref="M4x" name="M4_x_elev" />
+ <field field_ref="M4y" name="M4_y_elev" />
+ <field field_ref="Q1x" name="Q1_x_elev" />
+ <field field_ref="Q1y" name="Q1_y_elev" />
+ <field field_ref="O1x" name="O1_x_elev" />
+ <field field_ref="O1y" name="O1_y_elev" />
+ <field field_ref="P1x" name="P1_x_elev" />
+ <field field_ref="P1y" name="P1_y_elev" />
+ <field field_ref="S1x" name="S1_x_elev" />
+ <field field_ref="S1y" name="S1_y_elev" />
+ <field field_ref="2N2x" name="a2N2_x_elev" />
+ <field field_ref="2N2y" name="a2N2_y_elev" />
+ <field field_ref="MU2x" name="MU2_x_elev" />
+ <field field_ref="MU2y" name="MU2_y_elev" />
+ <field field_ref="NU2x" name="NU2_x_elev" />
+ <field field_ref="NU2y" name="NU2_y_elev" />
+ <field field_ref="L2x" name="L2_x_elev" />
+ <field field_ref="L2y" name="L2_y_elev" />
+ <field field_ref="T2x" name="T2_x_elev" />
+ <field field_ref="T2y" name="T2_y_elev" />
+ </file>
+
+ <file id="file12" name_suffix="_Tides_U" >
+ <field field_ref="M2x_u" name="M2_x_u" />
+ <field field_ref="M2y_u" name="M2_y_u" />
+ <field field_ref="S2x_u" name="S2_x_u" />
+ <field field_ref="S2y_u" name="S2_y_u" />
+ <field field_ref="N2x_u" name="N2_x_u" />
+ <field field_ref="N2y_u" name="N2_y_u" />
+ <field field_ref="K2x_u" name="K2_x_u" />
+ <field field_ref="K2y_u" name="K2_y_u" />
+ <field field_ref="K1x_u" name="K1_x_u" />
+ <field field_ref="K1y_u" name="K1_y_u" />
+ <field field_ref="M4x_u" name="M4_x_u" />
+ <field field_ref="M4y_u" name="M4_y_u" />
+ <field field_ref="Q1x_u" name="Q1_x_u" />
+ <field field_ref="Q1y_u" name="Q1_y_u" />
+ <field field_ref="O1x_u" name="O1_x_u" />
+ <field field_ref="O1y_u" name="O1_y_u" />
+ <field field_ref="P1x_u" name="P1_x_u" />
+ <field field_ref="P1y_u" name="P1_y_u" />
+ <field field_ref="S1x_u" name="S1_x_u" />
+ <field field_ref="S1y_u" name="S1_y_u" />
+ <field field_ref="2N2x_u" name="a2N2_x_u" />
+ <field field_ref="2N2y_u" name="a2N2_y_u" />
+ <field field_ref="MU2x_u" name="MU2_x_u" />
+ <field field_ref="MU2y_u" name="MU2_y_u" />
+ <field field_ref="NU2x_u" name="NU2_x_u" />
+ <field field_ref="NU2y_u" name="NU2_y_u" />
+ <field field_ref="L2x_u" name="L2_x_u" />
+ <field field_ref="L2y_u" name="L2_y_u" />
+ <field field_ref="T2x_u" name="T2_x_u" />
+ <field field_ref="T2y_u" name="T2_y_u" />
+ </file>
+
+ <file id="file13" name_suffix="_Tides_V" >
+ <field field_ref="M2x_v" name="M2_x_v" />
+ <field field_ref="M2y_v" name="M2_y_v" />
+ <field field_ref="S2x_v" name="S2_x_v" />
+ <field field_ref="S2y_v" name="S2_y_v" />
+ <field field_ref="N2x_v" name="N2_x_v" />
+ <field field_ref="N2y_v" name="N2_y_v" />
+ <field field_ref="K2x_v" name="K2_x_v" />
+ <field field_ref="K2y_v" name="K2_y_v" />
+ <field field_ref="K1x_v" name="K1_x_v" />
+ <field field_ref="K1y_v" name="K1_y_v" />
+ <field field_ref="M4x_v" name="M4_x_v" />
+ <field field_ref="M4y_v" name="M4_y_v" />
+ <field field_ref="Q1x_v" name="Q1_x_v" />
+ <field field_ref="Q1y_v" name="Q1_y_v" />
+ <field field_ref="O1x_v" name="O1_x_v" />
+ <field field_ref="O1y_v" name="O1_y_v" />
+ <field field_ref="P1x_v" name="P1_x_v" />
+ <field field_ref="P1y_v" name="P1_y_v" />
+ <field field_ref="S1x_v" name="S1_x_v" />
+ <field field_ref="S1y_v" name="S1_y_v" />
+ <field field_ref="2N2x_v" name="a2N2_x_v" />
+ <field field_ref="2N2y_v" name="a2N2_y_v" />
+ <field field_ref="MU2x_v" name="MU2_x_v" />
+ <field field_ref="MU2y_v" name="MU2_y_v" />
+ <field field_ref="NU2x_v" name="NU2_x_v" />
+ <field field_ref="NU2y_v" name="NU2_y_v" />
+ <field field_ref="L2x_v" name="L2_x_v" />
+ <field field_ref="L2y_v" name="L2_y_v" />
+ <field field_ref="T2x_v" name="T2_x_v" />
+ <field field_ref="T2y_v" name="T2_y_v" />
+ </file>
+-->
+ </file_group>
+
+ <file_group id="1m" output_freq="1mo" output_level="10" enabled=".TRUE."/> <!-- real monthly files -->
+ <file_group id="2m" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
+ <file_group id="3m" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
+ <file_group id="4m" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
+ <file_group id="6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
+ <file_group id="1y" output_freq="1y" output_level="10" enabled=".TRUE."/> <!-- real yearly files -->
+ <file_group id="2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
+ <file_group id="5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
+ <file_group id="10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
+
+ </file_definition>
+
diff --git a/EXP_Apr19/iodef.xml b/EXP_Apr19/iodef.xml
new file mode 100755
index 0000000..9a1f846
--- /dev/null
+++ b/EXP_Apr19/iodef.xml
@@ -0,0 +1,27 @@
+<?xml version="1.0"?>
+<simulation>
+
+<!-- ============================================================================================ -->
+<!-- XIOS context -->
+<!-- ============================================================================================ -->
+
+ <context id="xios">
+
+ <variable_definition>
+
+ <variable id="info_level" type="int">0</variable>
+ <variable id="using_server" type="bool">true</variable>
+ <variable id="using_oasis" type="bool">false</variable>
+ <variable id="oasis_codes_id" type="string" >oceanx</variable>
+
+ </variable_definition>
+
+ </context>
+
+<!-- ============================================================================================ -->
+<!-- NEMO CONTEXT add and suppress the components you need -->
+<!-- ============================================================================================ -->
+
+ <context id="nemo" src="./context_nemo.xml"/> <!-- NEMO -->
+
+</simulation>
diff --git a/EXP_Apr19/namelist_cfg b/EXP_Apr19/namelist_cfg
new file mode 100755
index 0000000..8ba50b2
--- /dev/null
+++ b/EXP_Apr19/namelist_cfg
@@ -0,0 +1,407 @@
+!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+!! NEMO/OPA : AMM12 configuration namelist used to overwrite defaults values defined in SHARED/namelist_ref
+!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+!-----------------------------------------------------------------------
+&namrun ! parameters of the run
+!-----------------------------------------------------------------------
+ cn_exp = "BoBEAS" ! experience name
+ nn_it000 = 1 ! 57601 ! first time step ! CHNAGE THIS TO END OF LAST RUN + 1
+ nn_itend = 100 ! 218880 crashed in Apr16 ! 138240 ! last time step (std 1 day = 144) (for dt = 6 min, so 240*dt = 1 day) ! CHANGE THIS TO THIS + 56 DAYS
+ nn_date0 = 20190401 !20110717 ! date at nit_0000 (format yyyymmdd) used if ln_rstart=F or (ln_rstart=T and nn_rstctl=0 or 1)
+ nn_time0 = 0 ! initial time of day in hhmm
+ nn_leapy = 1 ! Leap year calendar (1) or not (0)
+ ln_rstart = .false. ! start from rest (F) or from a restart file (T)
+ nn_euler = 1 ! = 0 : start with forward time step if ln_rstart=T
+ nn_rstctl = 2 ! restart control ==> activated only if ln_rstart=T
+ ! ! = 0 nn_date0 read in namelist ; nn_it000 : read in namelist
+ ! ! = 1 nn_date0 read in namelist ; nn_it000 : check consistancy between namelist and restart
+ ! ! = 2 nn_date0 read in restart ; nn_it000 : check consistancy between namelist and restart
+ cn_ocerst_in = "INDIAN_00138240_restart" ! suffix of ocean restart name (input) ! CHANGE THIS TO LAST RESTART FILE NUMBER
+ cn_ocerst_indir = "./restarts" ! directory from which to read input ocean restarts
+ cn_ocerst_out = "restart" ! suffix of ocean restart name (output)
+ cn_ocerst_outdir= "./restarts" ! directory in which to write output ocean restarts
+! nn_euler = 1 ! = 0 : start with forward time step if ln_rstart=.true.
+! cn_ocerst_in = "ammsurge_restart_oce" ! suffix of ocean restart name (input)
+! cn_ocerst_out = "restart_oce_out" ! suffix of ocean restart name (input)
+ nn_istate = 0 ! output the initial state (1) or not (0)
+ nn_stock = 100 ! 40320 =28days ! frequency of creation of a restart file (modulo referenced to 1) ! 28 DAYS
+ nn_write = 10 ! 86400 ! frequency of write in the output file (modulo referenced to nit000)
+/
+!-----------------------------------------------------------------------
+&namcfg ! parameters of the configuration
+!-----------------------------------------------------------------------
+ ln_read_cfg = .true. ! (=T) read the domain configuration file
+ ! (=F) user defined configuration ==>>> see usrdef(_...) modules
+ cn_domcfg = "domain_cfg.nc" ! domain configuration filename
+/
+!-----------------------------------------------------------------------
+!&namzgr ! vertical coordinate
+!-----------------------------------------------------------------------
+! ln_zps = .false. ! z-coordinate - partial steps (T/F)
+! ln_sco = .true. ! s- or hybrid z-s-coordinate (T/F)
+!/
+!-----------------------------------------------------------------------
+!&namzgr_sco ! s-coordinate or hybrid z-s-coordinate
+!-----------------------------------------------------------------------
+! rn_sbot_min = 6.0 ! minimum depth of s-bottom surface (>0) (m)
+! rn_hc = 0.0 ! critical depth for transition to stretched coordinates
+! rn_rmax = 1.0 ! maximum cut-off r-value allowed (0<r_max<1)
+! rn_theta = 0.0 ! surface control parameter (0<=theta<=20)
+!/
+!-----------------------------------------------------------------------
+&namdom ! space and time domain (bathymetry, mesh, timestep)
+!-----------------------------------------------------------------------
+! ln_2d = .false. ! (=T) run in 2D barotropic mode (no tracer processes or vertical diffusion)
+ rn_rdt = 60. ! time step for the dynamics (and tracer if nn_acc=0)
+/
+
+!-----------------------------------------------------------------------
+&namtsd ! data : Temperature & Salinity
+!-----------------------------------------------------------------------
+! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
+ sn_tem = 'initcd_votemper.nc', -1 ,'votemper', .false. , .true. , 'yearly' , '' , '' , ''
+ sn_sal = 'initcd_vosaline.nc', -1 ,'vosaline', .false. , .true. , 'yearly' , '' , '' , ''
+ sn_dep = 'initcd_depth.nc' , -12 ,'gdept_4D', .false. , .true. , 'yearly' , '' , '' , ''
+ sn_msk = 'sosie_initcd_mask.nc', -12 ,'mask', .false. , .true. , 'yearly' , '' , '' , ''
+
+ !
+ cn_dir = './ICS/' ! root directory for the location of the runoff files
+ ln_tsd_init = .true. ! Initialisation of ocean T & S with T & S input data (T) or not (F)
+ ln_tsd_interp = .true. ! Interpolation of T & S in the verticalinput data (T) or not (F)
+ ln_tsd_tradmp = .false. ! damping of ocean T & S toward T & S input data (T) or not (F)
+/
+!-----------------------------------------------------------------------
+&namsbc ! Surface Boundary Condition (surface module)
+!-----------------------------------------------------------------------
+ nn_fsbc = 1 ! frequency of surface boundary condition computation
+ ! (also = the frequency of sea-ice model call)
+ ln_usr = .false.
+ ln_blk = .true.
+ ln_apr_dyn = .false. ! Patm gradient added in ocean & ice Eqs. (T => fill namsbc_apr )
+ nn_ice = 0 ! =0 no ice boundary condition ,
+ ln_rnf = .true. ! Runoffs (T => fill namsbc_rnf)
+ ln_ssr = .false. ! Sea Surface Restoring on T and/or S (T => fill namsbc_ssr)
+ ln_traqsr = .false. ! Light penetration in the ocean (T => fill namtra_qsr)
+ nn_fwb = 0 ! FreshWater Budget: =0 unchecked
+/
+
+
+!-----------------------------------------------------------------------
+&namsbc_usr ! namsbc_surge surge model fluxes
+!-----------------------------------------------------------------------
+ ln_use_sbc = .false. ! (T) to turn on surge fluxes (wind and pressure only)
+ ! (F) for no fluxes (ie tide only case)
+
+!
+! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing !
+! sn_wndi = 'CARIB_u10_weights_bicubic_atmos.nc' , 1 ,'x_wind', .true. , .false. , 'daily' ,'weights_era5_INDIAN_bicubic.nc' , ''
+! sn_wndj = 'CARIB_v10_weights_bicubic_atmos.nc' , 1 ,'y_wind', .true. , .false. , 'daily' ,'weights_era5_INDIAN_bicubic.nc' , ''
+ cn_dir = './FORCING/' ! root directory for the location of the bulk files
+ rn_vfac = 1. ! multiplicative factor for ocean/ice velocity
+ ! in the calculation of the wind stress (0.=absolute winds or 1.=relative winds)
+ rn_charn_const = 0.0275
+/
+
+!-----------------------------------------------------------------------
+&namtra_qsr ! penetrative solar radiation
+!-----------------------------------------------------------------------
+/
+
+!-----------------------------------------------------------------------
+&namsbc_apr ! Atmospheric pressure used as ocean forcing or in bulk
+!-----------------------------------------------------------------------
+! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
+ sn_apr= 'ERA5_MSL', 1 , 'air_pressure_at_sea_level' , .true. , .false., 'daily' , 'weights_era5_INDIAN_bicubic.nc' , '' , 'ERA5_LSM'
+ cn_dir = './FORCING/'! root directory for the location of the bulk files
+ rn_pref = 101200. ! reference atmospheric pressure [N/m2]/
+ ln_ref_apr = .false. ! ref. pressure: global mean Patm (T) or a constant (F)
+ ln_apr_obc = .true. ! inverse barometer added to OBC ssh data
+/
+!-----------------------------------------------------------------------
+&namberg ! iceberg parameters (default: No iceberg)
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namlbc ! lateral momentum boundary condition
+!-----------------------------------------------------------------------
+ rn_shlat = 0 ! shlat = 0 ! 0 < shlat < 2 ! shlat = 2 ! 2 < shlat
+ ! free slip ! partial slip ! no slip ! strong slip
+/
+
+!-----------------------------------------------------------------------
+&nam_tide ! tide parameters
+!-----------------------------------------------------------------------
+ ln_tide = .true.
+ rdttideramp = 0
+ clname(1) = 'M2' ! name of constituent
+ clname(2) = 'K2'
+ clname(3) = 'S2'
+ clname(4) = 'N2'
+ clname(5) = 'Q1' ! name of constituent
+ clname(6) = 'O1'
+ clname(7) = 'P1'
+ clname(8) = 'K1'
+! clname(5) = '2N2'
+! clname(6) = 'MU2'
+! clname(7) = 'N2'
+! clname(8) = 'NU2'
+! clname(9) = 'M2'
+! clname(10) = 'L2'
+! clname(11) = 'T2'
+! clname(12) = 'S2'
+! clname(13) = 'K2'
+! clname(14) = 'M4'
+! clname(15) = '2MK6'
+! clname(16) = '2MS6'
+! clname(17) = '2SM2'
+! clname(18) = '3M2S2'
+! clname(19) = 'Lam2'
+! clname(20) = 'M6'
+! clname(21) = 'MK3'
+! clname(22) = 'MN4'
+! clname(23) = 'MNS2'
+! clname(24) = 'MO3'
+! clname(25) = 'MS4'
+! clname(26) = 'MSN2'
+/
+!-----------------------------------------------------------------------
+&nambdy ! unstructured open boundaries
+!-----------------------------------------------------------------------
+ ln_bdy = .true.
+ nb_bdy = 1 ! number of open boundary sets
+ cn_coords_file = 'coordinates.bdy.nc' ! bdy coordinates files
+ cn_dyn2d = 'flather' ! was flather
+ nn_dyn2d_dta = 0 ! = 0, bdy data are equal to the initial state
+ ! = 1, bdy data are read in 'bdydata .nc' files
+ ! = 2, use tidal harmonic forcing data from files
+ ! = 3, use external data AND tidal harmonic forcing
+
+ cn_dyn3d = 'frs' !
+ nn_dyn3d_dta = 0 ! = 0, bdy data are equal to the initial state
+ ! = 1, bdy data are read in 'bdydata .nc' files
+
+
+ cn_tra = 'frs' ! 'frs'
+ nn_tra_dta = 0 ! = 0, bdy data are equal to the initial state
+ ! = 1, bdy data are read in 'bdydata .nc' files
+ nn_rimwidth = 1 ! width of the relaxation zone
+ ln_tra_dmp = .false.
+/
+!-----------------------------------------------------------------------
+&nambdy_dta ! open boundaries - external data
+!-----------------------------------------------------------------------
+! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F ) ! 'monthly' ! filename ! pairing ! filename !
+ bn_ssh = 'INDIAN_bdy_SSH' , 24 , 'sossheig', .true. , .false. , 'monthly' , '' , '' , ''
+ bn_u2d = 'INDIAN_bdy_U' , 24 , 'vobtcrtx', .true. , .false. , 'monthly' , '' , '' , ''
+ bn_v2d = 'INDIAN_bdy_V' , 24 , 'vobtcrty', .true. , .false. , 'monthly' , '' , '' , ''
+ bn_u3d = 'INDIAN_bdy_U' , 24 , 'vozocrtx', .true. , .false. , 'monthly' , '' , '' , ''
+ bn_v3d = 'INDIAN_bdy_V' , 24 , 'vomecrty', .true. , .false. , 'monthly' , '' , '' , ''
+ bn_tem = 'INDIAN_bdy_TEMP', 24 , 'votemper', .true. , .false. , 'monthly' , '' , '' , ''
+ bn_sal = 'INDIAN_bdy_SAL' , 24 , 'vosaline', .true. , .false. , 'monthly' , '' , '' , ''
+/
+!-----------------------------------------------------------------------
+&nambdy_tide ! tidal forcing at open boundaries
+!-----------------------------------------------------------------------
+ filtide = 'TIDES/INDIAN_bdytide_rotT_' ! file name root of tidal forcing files
+ ln_bdytide_2ddta = .false.
+ ln_bdytide_conj = .false. !
+/
+!-----------------------------------------------------------------------
+&nambfr ! bottom friction
+!-----------------------------------------------------------------------
+ nn_bfr = 2 ! type of bottom friction : = 0 : free slip, = 1 : linear friction
+ ! = 2 : nonlinear friction
+ rn_bfri2 = 2.4e-3 ! bottom drag coefficient (non linear case)
+ rn_bfeb2 = 0.0e0 ! bottom turbulent kinetic energy background (m2/s2)
+ ln_loglayer = .false. ! loglayer bottom friction (only effect when nn_bfr = 2)
+ rn_bfrz0 = 0.003 ! bottom roughness (only effect when ln_loglayer = .true.)
+/
+!-----------------------------------------------------------------------
+&nambbc ! bottom temperature boundary condition
+!-----------------------------------------------------------------------
+ ln_trabbc = .false. ! Apply a geothermal heating at the ocean bottom
+/
+!-----------------------------------------------------------------------
+&nambbl ! bottom boundary layer scheme
+!-----------------------------------------------------------------------
+ nn_bbl_ldf = 0 ! diffusive bbl (=1) or not (=0)
+/
+!-----------------------------------------------------------------------
+&nameos ! ocean physical parameters
+!-----------------------------------------------------------------------
+ ln_teos10 = .true. ! = Use TEOS-10 equation of state
+/
+!-----------------------------------------------------------------------
+&namtra_adv ! advection scheme for tracer
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namtra_adv_mle ! mixed layer eddy parametrisation (Fox-Kemper param)
+!-----------------------------------------------------------------------
+/
+!----------------------------------------------------------------------------------
+&namtra_ldf ! lateral diffusion scheme for tracers
+!----------------------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namtra_ldfeiv ! eddy induced velocity param. (default: NO)
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namtra_dmp ! tracer: T & S newtonian damping
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namdyn_adv ! formulation of the momentum advection
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namdyn_vor ! option of physics/algorithm (not control by CPP keys)
+!-----------------------------------------------------------------------
+ ln_dynvor_een = .true. ! energy & enstrophy scheme
+/
+!-----------------------------------------------------------------------
+&namdyn_hpg ! Hydrostatic pressure gradient option
+!-----------------------------------------------------------------------
+ ln_hpg_zps = .false. ! z-coordinate - partial steps (interpolation)
+ ln_hpg_sco = .true. ! s-coordinate (Standard Jacobian scheme)
+/
+!-----------------------------------------------------------------------
+&namdyn_spg ! surface pressure gradient (CPP key only)
+!-----------------------------------------------------------------------
+ ln_dynspg_ts = .true. ! split-explicit free surface
+ ln_bt_auto = .true. ! Set nn_baro automatically to be just below
+ ! a user defined maximum courant number (rn_bt_cmax)
+/
+!-----------------------------------------------------------------------
+&namdyn_ldf ! lateral diffusion on momentum
+!-----------------------------------------------------------------------
+ ! ! Type of the operator :
+ ln_dynldf_blp = .true. ! bilaplacian operator
+ ln_dynldf_lap = .false. ! bilaplacian operator
+ ! ! Direction of action :
+ ln_dynldf_lev = .true. ! iso-level
+ ! Coefficient
+ rn_ahm_0 = 60.0 ! horizontal laplacian eddy viscosity [m2/s]
+ rn_bhm_0 = -1.0e+9 ! horizontal bilaplacian eddy viscosity [m4/s]
+/
+!-----------------------------------------------------------------------
+&namzdf ! vertical physics
+!-----------------------------------------------------------------------
+ rn_avm0 = 0.1e-6 ! vertical eddy viscosity [m2/s] (background Kz if not "key_zdfcst")
+ rn_avt0 = 0.1e-6 ! vertical eddy diffusivity [m2/s] (background Kz if not "key_zdfcst")
+ ln_zdfevd = .false. ! enhanced vertical diffusion (evd) (T) or not (F)
+ nn_evdm = 1 ! evd apply on tracer (=0) or on tracer and momentum (=1)
+/
+!-----------------------------------------------------------------------
+&namzdf_ric ! richardson number dependent vertical diffusion ("key_zdfric" )
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namzdf_tke ! turbulent eddy kinetic dependent vertical diffusion ("key_zdftke")
+!-----------------------------------------------------------------------
+/
+!------------------------------------------------------------------------
+&namzdf_kpp ! K-Profile Parameterization dependent vertical mixing ("key_zdfkpp", and optionally:
+!------------------------------------------------------------------------ "key_kppcustom" or "key_kpplktb")
+/
+!-----------------------------------------------------------------------
+&namzdf_gls ! GLS vertical diffusion ("key_zdfgls")
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namzdf_ddm ! double diffusive mixing parameterization ("key_zdfddm")
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namzdf_tmx ! tidal mixing parameterization ("key_zdftmx")
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namsol ! elliptic solver / island / free surface
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&nammpp ! Massively Parallel Processing ("key_mpp_mpi)
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namctl ! Control prints & Benchmark
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namnc4 ! netcdf4 chunking and compression settings ("key_netcdf4")
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namtrd ! diagnostics on dynamics and/or tracer trends ("key_trddyn" and/or "key_trdtra")
+! ! or mixed-layer trends or barotropic vorticity ("key_trdmld" or "key_trdvor")
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namflo ! float parameters ("key_float")
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namptr ! Poleward Transport Diagnostic
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namhsb ! Heat and salt budgets
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namdiu ! Cool skin and warm layer models (default F)
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&nam_diaharm ! Harmonic analysis of tidal constituents ('key_diaharm')
+!-----------------------------------------------------------------------
+ nit000_han = 1 !43201 ! First time step used for harmonic analysis
+ nitend_han = 43680 !86400 ! Last time step used for harmonic analysis
+ nstep_han = 5 ! Time step frequency for harmonic analysis
+ tname(1) = 'M2' ! Name of tidal constituents
+ tname(2) = 'K2'
+ tname(3) = 'S2'
+/
+!-----------------------------------------------------------------------
+&namdct ! transports through sections
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&nam_diatmb ! Top Middle Bottom Output (default F)
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&nam_dia25h ! 25h Mean Output (default F)
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namobs ! observation usage switch ('key_diaobs')
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&nam_asminc ! assimilation increments ('key_asminc')
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namsbc_wave ! External fields from wave model
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namdyn_nept ! Neptune effect (simplified: lateral and vertical diffusions removed)
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namwad ! Wetting and Drying namelist
+!-----------------------------------------------------------------------
+ ln_wd = .false. !: key to turn on/off wetting/drying (T: on, F: off)
+ rn_wdmin1=0.1 !: minimum water depth on dried cells
+ rn_wdmin2 = 0.01 !: tolerrance of minimum water depth on dried cells
+ rn_wdld = 20.0 !: land elevation below which wetting/drying will be considered
+ nn_wdit = 10 !: maximum number of iteration for W/D limiter
+/
diff --git a/EXP_Apr19/namelist_ref b/EXP_Apr19/namelist_ref
new file mode 100755
index 0000000..d301714
--- /dev/null
+++ b/EXP_Apr19/namelist_ref
@@ -0,0 +1,1200 @@
+!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+!! namelist_ref
+!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+!! NEMO/OPA : 1 - run manager (namrun)
+!! namelists 2 - Domain (namcfg, namzgr, namdom, namtsd, namcrs, namc1d, namc1d_uvd)
+!! 3 - Surface boundary (namsbc, namsbc_flx, namsbc_blk, namsbc_sas)
+!! namsbc_cpl, namtra_qsr, namsbc_rnf,
+!! namsbc_apr, namsbc_ssr, namsbc_alb, namsbc_wave)
+!! 4 - lateral boundary (namlbc, namagrif, nambdy, nambdy_tide)
+!! 5 - bottom boundary (nambfr, nambbc, nambbl)
+!! 6 - Tracer (nameos, namtra_adv, namtra_ldf, namtra_ldfeiv, namtra_dmp)
+!! 7 - dynamics (namdyn_adv, namdyn_vor, namdyn_hpg, namdyn_spg, namdyn_ldf)
+!! 8 - Verical physics (namzdf, namzdf_ric, namzdf_tke, namzdf_ddm, namzdf_tmx, namzdf_tmx_new)
+!! 9 - diagnostics (namnc4, namtrd, namspr, namflo, namhsb, namsto)
+!! 10 - miscellaneous (nammpp, namctl)
+!! 11 - Obs & Assim (namobs, nam_asminc)
+!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+
+!!======================================================================
+!! *** Run management namelists ***
+!!======================================================================
+!! namrun parameters of the run
+!!======================================================================
+!
+!-----------------------------------------------------------------------
+&namrun ! parameters of the run
+!-----------------------------------------------------------------------
+ nn_no = 0 ! job number (no more used...)
+ cn_exp = "ORCA2" ! experience name
+ nn_it000 = 1 ! first time step
+ nn_itend = 5475 ! last time step (std 5475)
+ nn_date0 = 010101 ! date at nit_0000 (format yyyymmdd) used if ln_rstart=F or (ln_rstart=T and nn_rstctl=0 or 1)
+ nn_time0 = 0 ! initial time of day in hhmm
+ nn_leapy = 0 ! Leap year calendar (1) or not (0)
+ ln_rstart = .false. ! start from rest (F) or from a restart file (T)
+ nn_euler = 1 ! = 0 : start with forward time step if ln_rstart=T
+ nn_rstctl = 0 ! restart control ==> activated only if ln_rstart=T
+ ! ! = 0 nn_date0 read in namelist ; nn_it000 : read in namelist
+ ! ! = 1 nn_date0 read in namelist ; nn_it000 : check consistancy between namelist and restart
+ ! ! = 2 nn_date0 read in restart ; nn_it000 : check consistancy between namelist and restart
+ cn_ocerst_in = "restart" ! suffix of ocean restart name (input)
+ cn_ocerst_indir = "." ! directory from which to read input ocean restarts
+ cn_ocerst_out = "restart" ! suffix of ocean restart name (output)
+ cn_ocerst_outdir= "." ! directory in which to write output ocean restarts
+ ln_iscpl = .false. ! cavity evolution forcing or coupling to ice sheet model
+ nn_istate = 0 ! output the initial state (1) or not (0)
+ ln_rst_list = .false. ! output restarts at list of times using nn_stocklist (T) or at set frequency with nn_stock (F)
+ nn_stock = 5475 ! frequency of creation of a restart file (modulo referenced to 1)
+ nn_stocklist = 0,0,0,0,0,0,0,0,0,0 ! List of timesteps when a restart file is to be written
+ nn_write = 5475 ! frequency of write in the output file (modulo referenced to nn_it000)
+ ln_mskland = .false. ! mask land points in NetCDF outputs (costly: + ~15%)
+ ln_cfmeta = .false. ! output additional data to netCDF files required for compliance with the CF metadata standard
+ ln_clobber = .true. ! clobber (overwrite) an existing file
+ nn_chunksz = 0 ! chunksize (bytes) for NetCDF file (works only with iom_nf90 routines)
+/
+!
+!!======================================================================
+!! *** Domain namelists ***
+!!======================================================================
+!! namcfg parameters of the configuration
+!! namdom space and time domain (bathymetry, mesh, timestep)
+!! namwad Wetting and drying (default F)
+!! namtsd data: temperature & salinity
+!! namcrs coarsened grid (for outputs and/or TOP) ("key_crs")
+!! namc1d 1D configuration options ("key_c1d")
+!! namc1d_dyndmp 1D newtonian damping applied on currents ("key_c1d")
+!! namc1d_uvd 1D data (currents) ("key_c1d")
+!!======================================================================
+!
+!-----------------------------------------------------------------------
+&namcfg ! parameters of the configuration
+!-----------------------------------------------------------------------
+ ln_read_cfg = .false. ! (=T) read the domain configuration file
+ ! ! (=F) user defined configuration ==>>> see usrdef(_...) modules
+ cn_domcfg = "domain_cfg" ! domain configuration filename
+ !
+ ln_write_cfg= .false. ! (=T) create the domain configuration file
+ cn_domcfg_out = "domain_cfg_out" ! newly created domain configuration filename
+ !
+ ln_use_jattr = .false. ! use (T) the file attribute: open_ocean_jstart, if present
+ ! ! in netcdf input files, as the start j-row for reading
+/
+!-----------------------------------------------------------------------
+&namdom ! space and time domain (bathymetry, mesh, timestep)
+!-----------------------------------------------------------------------
+ ln_linssh = .false. ! =T linear free surface ==>> model level are fixed in time
+ nn_closea = 0 ! remove (=0) or keep (=1) closed seas and lakes (ORCA)
+ !
+ nn_msh = 0 ! create (>0) a mesh file or not (=0)
+ rn_isfhmin = 1.00 ! treshold (m) to discriminate grounding ice to floating ice
+ !
+ rn_rdt = 5760. ! time step for the dynamics (and tracer if nn_acc=0)
+ rn_atfp = 0.1 ! asselin time filter parameter
+ !
+ ln_crs = .false. ! Logical switch for coarsening module
+/
+!-----------------------------------------------------------------------
+&namtsd ! data : Temperature & Salinity
+!-----------------------------------------------------------------------
+! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
+ sn_tem = './ICS/initcd_votemper.nc', -1 ,'votemper', .false. , .true. , 'yearly' , '' , '' , ''
+ sn_sal = './ICS/initcd_vosaline.nc', -1 ,'vosaline', .false. , .true. , 'yearly' , '' , '' , ''
+
+
+ !
+ cn_dir = './' ! root directory for the location of the runoff files
+ ln_tsd_init = .true. ! Initialisation of ocean T & S with T & S input data (T) or not (F)
+ ln_tsd_tradmp = .true. ! damping of ocean T & S toward T & S input data (T) or not (F)
+/
+!-----------------------------------------------------------------------
+&namwad ! Wetting and drying (default F)
+!-----------------------------------------------------------------------
+ ln_wd = .false. ! T/F activation of wetting and drying
+ rn_wdmin1 = 0.1 ! Minimum wet depth on dried cells
+ rn_wdmin2 = 0.01 ! Tolerance of min wet depth on dried cells
+ rn_wdld = 20.0 ! Land elevation below which wetting/drying is allowed
+ nn_wdit = 10 ! Max iterations for W/D limiter
+/
+!-----------------------------------------------------------------------
+&namcrs ! coarsened grid (for outputs and/or TOP) ("key_crs")
+!-----------------------------------------------------------------------
+ nn_factx = 3 ! Reduction factor of x-direction
+ nn_facty = 3 ! Reduction factor of y-direction
+ nn_binref = 0 ! Bin centering preference: NORTH or EQUAT
+ ! 0, coarse grid is binned with preferential treatment of the north fold
+ ! 1, coarse grid is binned with centering at the equator
+ ! Symmetry with nn_facty being odd-numbered. Asymmetry with even-numbered nn_facty.
+ nn_msh_crs = 1 ! create (=1) a mesh file or not (=0)
+ nn_crs_kz = 0 ! 0, MEAN of volume boxes
+ ! 1, MAX of boxes
+ ! 2, MIN of boxes
+ ln_crs_wn = .true. ! wn coarsened (T) or computed using horizontal divergence ( F )
+/
+!-----------------------------------------------------------------------
+&namc1d ! 1D configuration options ("key_c1d")
+!-----------------------------------------------------------------------
+ rn_lat1d = 50 ! Column latitude (default at PAPA station)
+ rn_lon1d = -145 ! Column longitude (default at PAPA station)
+ ln_c1d_locpt= .true. ! Localization of 1D config in a grid (T) or independant point (F)
+/
+!-----------------------------------------------------------------------
+&namc1d_dyndmp ! U & V newtonian damping ("key_c1d")
+!-----------------------------------------------------------------------
+ ln_dyndmp = .false. ! add a damping term (T) or not (F)
+/
+!-----------------------------------------------------------------------
+&namc1d_uvd ! data: U & V currents ("key_c1d")
+!-----------------------------------------------------------------------
+! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
+ sn_ucur = 'ucurrent' , -1 ,'u_current', .false. , .true. , 'monthly' , '' , 'Ume' , ''
+ sn_vcur = 'vcurrent' , -1 ,'v_current', .false. , .true. , 'monthly' , '' , 'Vme' , ''
+!
+ cn_dir = './' ! root directory for the location of the files
+ ln_uvd_init = .false. ! Initialisation of ocean U & V with U & V input data (T) or not (F)
+ ln_uvd_dyndmp = .false. ! damping of ocean U & V toward U & V input data (T) or not (F)
+/
+
+!!======================================================================
+!! *** Surface Boundary Condition namelists ***
+!!======================================================================
+!! namsbc surface boundary condition
+!! namsbc_flx flux formulation (ln_flx =T)
+!! namsbc_blk Bulk formulae formulation (ln_blk =T)
+!! namsbc_cpl CouPLed formulation ("key_oasis3" )
+!! namsbc_sas Stand-Alone Surface module
+!! namtra_qsr penetrative solar radiation (ln_traqsr =T)
+!! namsbc_rnf river runoffs (ln_rnf =T)
+!! namsbc_isf ice shelf melting/freezing (nn_isf >0)
+!! namsbc_iscpl coupling option between land ice model and ocean
+!! namsbc_apr Atmospheric Pressure (ln_apr_dyn =T)
+!! namsbc_ssr sea surface restoring term (for T and/or S) (ln_ssr =T)
+!! namsbc_alb albedo parameters
+!! namsbc_wave external fields from wave model (ln_wave =T)
+!! namberg iceberg floats (ln_icebergs=T)
+!!======================================================================
+!
+!-----------------------------------------------------------------------
+&namsbc ! Surface Boundary Condition (surface module)
+!-----------------------------------------------------------------------
+ nn_fsbc = 5 ! frequency of surface boundary condition computation
+ ! (also = the frequency of sea-ice & iceberg model call)
+ ! Type of air-sea fluxes
+ ln_usr = .false. ! user defined formulation (T => check usrdef_sbc)
+ ln_flx = .false. ! flux formulation (T => fill namsbc_flx )
+ ln_blk = .true. ! Bulk formulation (T => fill namsbc_blk )
+ ! Type of coupling (Ocean/Ice/Atmosphere) :
+ ln_cpl = .false. ! atmosphere coupled formulation ( requires key_oasis3 )
+ ln_mixcpl = .false. ! forced-coupled mixed formulation ( requires key_oasis3 )
+ nn_components = 0 ! configuration of the opa-sas OASIS coupling
+ ! =0 no opa-sas OASIS coupling: default single executable configuration
+ ! =1 opa-sas OASIS coupling: multi executable configuration, OPA component
+ ! =2 opa-sas OASIS coupling: multi executable configuration, SAS component
+ nn_limflx = -1 ! LIM3 Multi-category heat flux formulation (use -1 if LIM3 is not used)
+ ! =-1 Use per-category fluxes, bypass redistributor, forced mode only, not yet implemented coupled
+ ! = 0 Average per-category fluxes (forced and coupled mode)
+ ! = 1 Average and redistribute per-category fluxes, forced mode only, not yet implemented coupled
+ ! = 2 Redistribute a single flux over categories (coupled mode only)
+ ! Sea-ice :
+ nn_ice = 3 ! =0 no ice boundary condition ,
+ ! =1 use observed ice-cover ,
+ ! =2 to 4 : ice-model used (LIM2, LIM3 or CICE) ("key_lim3", "key_lim2", or "key_cice")
+ nn_ice_embd = 1 ! =0 levitating ice (no mass exchange, concentration/dilution effect)
+ ! =1 levitating ice with mass and salt exchange but no presure effect
+ ! =2 embedded sea-ice (full salt and mass exchanges and pressure)
+ ! Misc. options of sbc :
+ ln_traqsr = .false. ! Light penetration in the ocean (T => fill namtra_qsr)
+ ln_dm2dc = .false. ! daily mean to diurnal cycle on short wave
+ ln_rnf = .true. ! runoffs (T => fill namsbc_rnf)
+ ln_ssr = .true. ! Sea Surface Restoring on T and/or S (T => fill namsbc_ssr)
+ nn_fwb = 2 ! FreshWater Budget: =0 unchecked
+ ! =1 global mean of e-p-r set to zero at each time step
+ ! =2 annual global mean of e-p-r set to zero
+ ln_apr_dyn = .false. ! Patm gradient added in ocean & ice Eqs. (T => fill namsbc_apr )
+ ln_isf = .false. ! ice shelf (T => fill namsbc_isf)
+ ln_wave = .false. ! Activate coupling with wave (T => fill namsbc_wave)
+ ln_cdgw = .false. ! Neutral drag coefficient read from wave model (T => ln_wave=.true. & fill namsbc_wave)
+ ln_sdw = .false. ! Read 2D Surf Stokes Drift & Computation of 3D stokes drift (T => ln_wave=.true. & fill namsbc_wave)
+ ln_tauoc = .false. ! Activate ocean stress modified by external wave induced stress (T => ln_wave=.true. & fill namsbc_wave)
+ ln_stcor = .false. ! Activate Stokes Coriolis term (T => ln_wave=.true. & ln_sdw=.true. & fill namsbc_wave)
+ nn_lsm = 1 ! =0 land/sea mask for input fields is not applied (keep empty land/sea mask filename field) ,
+ ! =1:n number of iterations of land/sea mask application for input fields (fill land/sea mask filename field)
+/
+!-----------------------------------------------------------------------
+&namsbc_flx ! surface boundary condition : flux formulation
+!-----------------------------------------------------------------------
+! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
+ sn_utau = 'utau' , 24 , 'utau' , .false. , .false., 'yearly' , '' , '' , ''
+ sn_vtau = 'vtau' , 24 , 'vtau' , .false. , .false., 'yearly' , '' , '' , ''
+ sn_qtot = 'qtot' , 24 , 'qtot' , .false. , .false., 'yearly' , '' , '' , ''
+ sn_qsr = 'qsr' , 24 , 'qsr' , .false. , .false., 'yearly' , '' , '' , ''
+ sn_emp = 'emp' , 24 , 'emp' , .false. , .false., 'yearly' , '' , '' , ''
+
+ cn_dir = './fluxes/' ! root directory for the location of the flux files
+/
+!-----------------------------------------------------------------------
+&namsbc_blk ! namsbc_blk generic Bulk formula (ln_blk = T)
+!-----------------------------------------------------------------------
+! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
+ sn_humi= 'ERA5_SPH', 1, 'SPH', .true., .false., 'yearly', 'weights_era5_INDIAN_bicubic.nc', '', 'ERA5_LSM'
+ sn_prec= 'ERA5_TP', 1, 'TP', .true., .false., 'yearly', 'weights_era5_INDIAN_bicubic.nc', '', 'ERA5_LSM'
+ sn_qlw = 'ERA5_STRD', 1, 'STRD', .true., .false., 'yearly', 'weights_era5_INDIAN_bicubic.nc', '', 'ERA5_LSM'
+ sn_qsr= 'ERA5_SSRD', 1, 'SSRD', .true., .false., 'yearly', 'weights_era5_INDIAN_bicubic.nc', '', 'ERA5_LSM'
+ sn_snow= 'ERA5_SF', 1, 'SF', .true., .false., 'yearly', 'weights_era5_INDIAN_bicubic.nc', '', 'ERA5_LSM'
+ sn_tair= 'ERA5_T2M', 1, 'T2M', .true., .false., 'yearly', 'weights_era5_INDIAN_bicubic.nc', '', 'ERA5_LSM'
+ sn_wndi= 'ERA5_U10', 1, 'U10', .true., .false., 'yearly', 'weights_era5_INDIAN_bicubic.nc', 'Uwnd', 'ERA5_LSM'
+ sn_wndj= 'ERA5_V10', 1, 'V10', .true., .false., 'yearly', 'weights_era5_INDIAN_bicubic.nc', 'Vwnd', 'ERA5_LSM'
+ sn_slp= 'SPH_ERA5_SP', 1, 'SP', .true., .false., 'yearly', 'weights_era5_INDIAN_bicubic.nc', '', 'ERA5_LSM'
+! sn_tdif= 'SPH_ERA5_D2M', 1, 'D2M', .true., .false., 'yearly', 'weights_era5_INDIAN_bicubic.nc', '', 'ERA5_LSM'
+ ! ! bulk algorithm :
+ ln_NCAR = .true. ! "NCAR" algorithm (Large and Yeager 2008)
+ ln_COARE_3p0= .false. ! "COARE 3.0" algorithm (Fairall et al. 2003)
+ ln_COARE_3p5= .false. ! "COARE 3.5" algorithm (Edson et al. 2013)
+ ln_ECMWF = .false. ! "ECMWF" algorithm (IFS cycle 31)
+ !
+ cn_dir = './fluxes/' ! root directory for the location of the bulk files
+ ln_taudif = .false. ! HF tau contribution: use "mean of stress module - module of the mean stress" data
+ rn_zqt = 2. ! Air temperature and humidity reference height (m)
+ rn_zu = 10. ! Wind vector reference height (m)
+ rn_pfac = 1. ! multiplicative factor for precipitation (total & snow)
+ rn_efac = 1. ! multiplicative factor for evaporation (0. or 1.)
+ rn_vfac = 1. ! multiplicative factor for ocean/ice velocity
+ ! in the calculation of the wind stress (0.=absolute winds or 1.=relative winds)
+ ln_Cd_L12 = .false. ! Modify the drag ice-atm and oce-atm depending on ice concentration
+ ! This parameterization is from Lupkes et al. (JGR 2012)
+/
+!-----------------------------------------------------------------------
+&namsbc_cpl ! coupled ocean/atmosphere model ("key_oasis3")
+!-----------------------------------------------------------------------
+! ! description ! multiple ! vector ! vector ! vector !
+! ! ! categories ! reference ! orientation ! grids !
+! send
+ sn_snd_temp = 'weighted oce and ice' , 'no' , '' , '' , ''
+ sn_snd_alb = 'weighted ice' , 'no' , '' , '' , ''
+ sn_snd_thick = 'none' , 'no' , '' , '' , ''
+ sn_snd_crt = 'none' , 'no' , 'spherical' , 'eastward-northward' , 'T'
+ sn_snd_co2 = 'coupled' , 'no' , '' , '' , ''
+ sn_snd_crtw = 'none' , 'no' , '' , '' , 'U,V'
+ sn_snd_ifrac = 'none' , 'no' , '' , '' , ''
+ sn_snd_wlev = 'coupled' , 'no' , '' , '' , ''
+! receive
+ sn_rcv_w10m = 'none' , 'no' , '' , '' , ''
+ sn_rcv_taumod = 'coupled' , 'no' , '' , '' , ''
+ sn_rcv_tau = 'oce only' , 'no' , 'cartesian' , 'eastward-northward', 'U,V'
+ sn_rcv_dqnsdt = 'coupled' , 'no' , '' , '' , ''
+ sn_rcv_qsr = 'oce and ice' , 'no' , '' , '' , ''
+ sn_rcv_qns = 'oce and ice' , 'no' , '' , '' , ''
+ sn_rcv_emp = 'conservative' , 'no' , '' , '' , ''
+ sn_rcv_rnf = 'coupled' , 'no' , '' , '' , ''
+ sn_rcv_cal = 'coupled' , 'no' , '' , '' , ''
+ sn_rcv_co2 = 'coupled' , 'no' , '' , '' , ''
+ sn_rcv_hsig = 'none' , 'no' , '' , '' , ''
+ sn_rcv_iceflx = 'none' , 'no' , '' , '' , ''
+ sn_rcv_mslp = 'none' , 'no' , '' , '' , ''
+ sn_rcv_phioc = 'none' , 'no' , '' , '' , ''
+ sn_rcv_sdrfx = 'none' , 'no' , '' , '' , ''
+ sn_rcv_sdrfy = 'none' , 'no' , '' , '' , ''
+ sn_rcv_wper = 'none' , 'no' , '' , '' , ''
+ sn_rcv_wnum = 'none' , 'no' , '' , '' , ''
+ sn_rcv_wstrf = 'none' , 'no' , '' , '' , ''
+ sn_rcv_wdrag = 'none' , 'no' , '' , '' , ''
+!
+ nn_cplmodel = 1 ! Maximum number of models to/from which NEMO is potentialy sending/receiving data
+ ln_usecplmask = .false. ! use a coupling mask file to merge data received from several models
+ ! ! -> file cplmask.nc with the float variable called cplmask (jpi,jpj,nn_cplmodel)
+/
+!-----------------------------------------------------------------------
+&namsbc_sas ! Stand Alone Surface boundary condition
+!-----------------------------------------------------------------------
+! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
+ l_sasread = .TRUE. ! Read fields in a file if .TRUE. , or initialize to 0. in sbcssm.F90 if .FALSE.
+ sn_usp = 'sas_grid_U', 120 , 'vozocrtx', .true. , .true. , 'yearly' , '' , '' , ''
+ sn_vsp = 'sas_grid_V', 120 , 'vomecrty', .true. , .true. , 'yearly' , '' , '' , ''
+ sn_tem = 'sas_grid_T', 120 , 'sosstsst', .true. , .true. , 'yearly' , '' , '' , ''
+ sn_sal = 'sas_grid_T', 120 , 'sosaline', .true. , .true. , 'yearly' , '' , '' , ''
+ sn_ssh = 'sas_grid_T', 120 , 'sossheig', .true. , .true. , 'yearly' , '' , '' , ''
+ sn_e3t = 'sas_grid_T', 120 , 'e3t_m' , .true. , .true. , 'yearly' , '' , '' , ''
+ sn_frq = 'sas_grid_T', 120 , 'frq_m' , .true. , .true. , 'yearly' , '' , '' , ''
+
+ ln_3d_uve = .true. ! specify whether we are supplying a 3D u,v and e3 field
+ ln_read_frq = .false. ! specify whether we must read frq or not
+ cn_dir = './' ! root directory for the location of the bulk files are
+/
+!-----------------------------------------------------------------------
+&namtra_qsr ! penetrative solar radiation (ln_traqsr=T)
+!-----------------------------------------------------------------------
+! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
+ sn_chl ='chlorophyll', -1 , 'CHLA' , .true. , .true. , 'yearly' , '' , '' , ''
+
+ cn_dir = './' ! root directory for the location of the runoff files
+ ln_qsr_rgb = .true. ! RGB (Red-Green-Blue) light penetration
+ ln_qsr_2bd = .false. ! 2 bands light penetration
+ ln_qsr_bio = .false. ! bio-model light penetration
+ nn_chldta = 1 ! RGB : Chl data (=1) or cst value (=0)
+ rn_abs = 0.58 ! RGB & 2 bands: fraction of light (rn_si1)
+ rn_si0 = 0.35 ! RGB & 2 bands: shortess depth of extinction
+ rn_si1 = 23.0 ! 2 bands: longest depth of extinction
+ ln_qsr_ice = .false. ! light penetration for ice-model LIM3
+/
+!-----------------------------------------------------------------------
+&namsbc_rnf ! runoffs namelist surface boundary condition (ln_rnf=T)
+!-----------------------------------------------------------------------
+! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
+ sn_rnf = 'river_test' , -1 , 'rorunoff', .true. , .true. , 'yearly' , '' , '' , ''
+ sn_cnf = 'river_test' , 0 , 'socoefr0', .false. , .true. , 'yearly' , '' , '' , ''
+ sn_s_rnf = 'runoffs' , 24 , 'rosaline', .true. , .true. , 'yearly' , '' , '' , ''
+ sn_t_rnf = 'runoffs' , 24 , 'rotemper', .true. , .true. , 'yearly' , '' , '' , ''
+ sn_dep_rnf = 'runoffs' , 0 , 'rodepth' , .false. , .true. , 'yearly' , '' , '' , ''
+
+ cn_dir = './' ! root directory for the location of the runoff files
+ ln_rnf_mouth= .false. ! specific treatment at rivers mouths
+ rn_hrnf = 15.e0 ! depth over which enhanced vertical mixing is used (ln_rnf_mouth=T)
+ rn_avt_rnf = 1.e-3 ! value of the additional vertical mixing coef. [m2/s] (ln_rnf_mouth=T)
+ rn_rfact = 1.e0 ! multiplicative factor for runoff
+ ln_rnf_depth= .false. ! read in depth information for runoff
+ ln_rnf_tem = .false. ! read in temperature information for runoff
+ ln_rnf_sal = .false. ! read in salinity information for runoff
+ ln_rnf_depth_ini = .false. ! compute depth at initialisation from runoff file
+ rn_rnf_max = 5.735e-4 ! max value of the runoff climatologie over global domain ( ln_rnf_depth_ini = .true )
+ rn_dep_max = 150. ! depth over which runoffs is spread ( ln_rnf_depth_ini = .true )
+ nn_rnf_depth_file = 0 ! create (=1) a runoff depth file or not (=0)
+/
+!-----------------------------------------------------------------------
+&namsbc_isf ! Top boundary layer (ISF) (nn_isf >0)
+!-----------------------------------------------------------------------
+! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
+! nn_isf == 4
+ sn_fwfisf = 'rnfisf' , -12 ,'sowflisf', .false. , .true. , 'yearly' , '' , '' , ''
+! nn_isf == 3
+ sn_rnfisf = 'rnfisf' , -12 ,'sofwfisf', .false. , .true. , 'yearly' , '' , '' , ''
+! nn_isf == 2 and 3
+ sn_depmax_isf='rnfisf' , -12 ,'sozisfmax', .false. , .true. , 'yearly' , '' , '' , ''
+ sn_depmin_isf='rnfisf' , -12 ,'sozisfmin', .false. , .true. , 'yearly' , '' , '' , ''
+! nn_isf == 2
+ sn_Leff_isf = 'rnfisf' , -12 ,'Leff' , .false. , .true. , 'yearly' , '' , '' , ''
+!
+! for all case
+ nn_isf = 1 ! ice shelf melting/freezing
+ ! 1 = presence of ISF 2 = bg03 parametrisation
+ ! 3 = rnf file for isf 4 = ISF fwf specified
+ ! option 1 and 4 need ln_isfcav = .true. (domzgr)
+! only for nn_isf = 1 or 2
+ rn_gammat0 = 1.e-4 ! gammat coefficient used in blk formula
+ rn_gammas0 = 1.e-4 ! gammas coefficient used in blk formula
+! only for nn_isf = 1 or 4
+ rn_hisf_tbl = 30. ! thickness of the top boundary layer (Losh et al. 2008)
+ ! ! 0 => thickness of the tbl = thickness of the first wet cell
+! only for nn_isf = 1
+ nn_isfblk = 1 ! 1 ISOMIP like: 2 equations formulation (Hunter et al., 2006)
+ ! ! 2 ISOMIP+ like: 3 equations formulation (Asay-Davis et al., 2015)
+ nn_gammablk = 1 ! 0 = cst Gammat (= gammat/s)
+ ! ! 1 = velocity dependend Gamma (u* * gammat/s) (Jenkins et al. 2010)
+ ! ! 2 = velocity and stability dependent Gamma (Holland et al. 1999)
+/
+!-----------------------------------------------------------------------
+&namsbc_iscpl ! land ice / ocean coupling option
+!-----------------------------------------------------------------------
+ nn_drown = 10 ! number of iteration of the extrapolation loop (fill the new wet cells)
+ ln_hsb = .false. ! activate conservation module (conservation exact after a time of rn_fiscpl)
+ nn_fiscpl = 43800 ! (number of time step) conservation period (maybe should be fix to the coupling frequencey of restart frequency)
+/
+!-----------------------------------------------------------------------
+&namsbc_apr ! Atmospheric pressure used as ocean forcing (ln_apr_dyn =T)
+!-----------------------------------------------------------------------
+! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
+ sn_apr = 'patm' , -1 ,'somslpre', .true. , .true. , 'yearly' , '' , '' , ''
+
+ cn_dir = './' ! root directory for the location of the bulk files
+ rn_pref = 101000. ! reference atmospheric pressure [N/m2]/
+ ln_ref_apr = .false. ! ref. pressure: global mean Patm (T) or a constant (F)
+ ln_apr_obc = .false. ! inverse barometer added to OBC ssh data
+/
+!-----------------------------------------------------------------------
+&namsbc_ssr ! surface boundary condition : sea surface restoring (ln_ssr=T)
+!-----------------------------------------------------------------------
+! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
+ sn_sst = 'sst_data', 24 , 'sst' , .false. , .false., 'yearly' , '' , '' , ''
+ sn_sss = 'sss_data', -1 , 'sss' , .true. , .true. , 'yearly' , '' , '' , ''
+
+ cn_dir = './' ! root directory for the location of the runoff files
+ nn_sstr = 0 ! add a retroaction term in the surface heat flux (=1) or not (=0)
+ nn_sssr = 2 ! add a damping term in the surface freshwater flux (=2)
+ ! or to SSS only (=1) or no damping term (=0)
+ rn_dqdt = -40. ! magnitude of the retroaction on temperature [W/m2/K]
+ rn_deds = -166.67 ! magnitude of the damping on salinity [mm/day]
+ ln_sssr_bnd = .true. ! flag to bound erp term (associated with nn_sssr=2)
+ rn_sssr_bnd = 4.e0 ! ABS(Max/Min) value of the damping erp term [mm/day]
+/
+!-----------------------------------------------------------------------
+&namsbc_alb ! albedo parameters
+!-----------------------------------------------------------------------
+ nn_ice_alb = 1 ! parameterization of ice/snow albedo
+ ! 0: Shine & Henderson-Sellers (JGR 1985), giving clear-sky albedo
+ ! 1: "home made" based on Brandt et al. (JClim 2005) and Grenfell & Perovich (JGR 2004),
+ ! giving cloud-sky albedo
+ rn_alb_sdry = 0.85 ! dry snow albedo : 0.80 (nn_ice_alb = 0); 0.85 (nn_ice_alb = 1); obs 0.85-0.87 (cloud-sky)
+ rn_alb_smlt = 0.75 ! melting snow albedo : 0.65 ( '' ) ; 0.75 ( '' ) ; obs 0.72-0.82 ( '' )
+ rn_alb_idry = 0.60 ! dry ice albedo : 0.72 ( '' ) ; 0.60 ( '' ) ; obs 0.54-0.65 ( '' )
+ rn_alb_imlt = 0.50 ! bare puddled ice albedo : 0.53 ( '' ) ; 0.50 ( '' ) ; obs 0.49-0.58 ( '' )
+/
+!-----------------------------------------------------------------------
+&namsbc_wave ! External fields from wave model (ln_wave=T)
+!-----------------------------------------------------------------------
+! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
+ sn_cdg = 'sdw_wave' , 1 , 'drag_coeff' , .true. , .false. , 'daily' , '' , '' , ''
+ sn_usd = 'sdw_wave' , 1 , 'u_sd2d' , .true. , .false. , 'daily' , '' , '' , ''
+ sn_vsd = 'sdw_wave' , 1 , 'v_sd2d' , .true. , .false. , 'daily' , '' , '' , ''
+ sn_hsw = 'sdw_wave' , 1 , 'hs' , .true. , .false. , 'daily' , '' , '' , ''
+ sn_wmp = 'sdw_wave' , 1 , 'wmp' , .true. , .false. , 'daily' , '' , '' , ''
+ sn_wnum = 'sdw_wave' , 1 , 'wave_num' , .true. , .false. , 'daily' , '' , '' , ''
+ sn_tauoc = 'sdw_wave' , 1 , 'wave_stress', .true. , .false. , 'daily' , '' , '' , ''
+!
+ cn_dir = './' ! root directory for the location of drag coefficient files
+/
+!-----------------------------------------------------------------------
+&namberg ! iceberg parameters (default: No iceberg)
+!-----------------------------------------------------------------------
+ ln_icebergs = .false. ! iceberg floats or not
+ ln_bergdia = .true. ! Calculate budgets
+ nn_verbose_level = 1 ! Turn on more verbose output if level > 0
+ nn_verbose_write = 15 ! Timesteps between verbose messages
+ nn_sample_rate = 1 ! Timesteps between sampling for trajectory storage
+ ! Initial mass required for an iceberg of each class
+ rn_initial_mass = 8.8e7, 4.1e8, 3.3e9, 1.8e10, 3.8e10, 7.5e10, 1.2e11, 2.2e11, 3.9e11, 7.4e11
+ ! Proportion of calving mass to apportion to each class
+ rn_distribution = 0.24, 0.12, 0.15, 0.18, 0.12, 0.07, 0.03, 0.03, 0.03, 0.02
+ ! Ratio between effective and real iceberg mass (non-dim)
+ ! i.e. number of icebergs represented at a point
+ rn_mass_scaling = 2000, 200, 50, 20, 10, 5, 2, 1, 1, 1
+ ! thickness of newly calved bergs (m)
+ rn_initial_thickness = 40., 67., 133., 175., 250., 250., 250., 250., 250., 250.
+ rn_rho_bergs = 850. ! Density of icebergs
+ rn_LoW_ratio = 1.5 ! Initial ratio L/W for newly calved icebergs
+ ln_operator_splitting = .true. ! Use first order operator splitting for thermodynamics
+ rn_bits_erosion_fraction = 0. ! Fraction of erosion melt flux to divert to bergy bits
+ rn_sicn_shift = 0. ! Shift of sea-ice concn in erosion flux (0<sicn_shift<1)
+ ln_passive_mode = .false. ! iceberg - ocean decoupling
+ nn_test_icebergs = 10 ! Create test icebergs of this class (-1 = no)
+ ! Put a test iceberg at each gridpoint in box (lon1,lon2,lat1,lat2)
+ rn_test_box = 108.0, 116.0, -66.0, -58.0
+ rn_speed_limit = 0. ! CFL speed limit for a berg
+
+! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F ) ! 'monthly' ! filename ! pairing ! filename !
+ sn_icb = 'calving', -1 , 'calvingmask', .true. , .true. , 'yearly' , '' , '' , ''
+
+ cn_dir = './'
+/
+
+!!======================================================================
+!! *** Lateral boundary condition ***
+!!======================================================================
+!! namlbc lateral momentum boundary condition
+!! namagrif agrif nested grid ( read by child model only ) ("key_agrif")
+!! nam_tide Tidal forcing
+!! nambdy Unstructured open boundaries
+!! nambdy_dta Unstructured open boundaries - external data
+!! nambdy_tide tidal forcing at open boundaries
+!!======================================================================
+!
+!-----------------------------------------------------------------------
+&namlbc ! lateral momentum boundary condition
+!-----------------------------------------------------------------------
+ ! ! free slip ! partial slip ! no slip ! strong slip
+ rn_shlat = 2. ! shlat = 0 ! 0 < shlat < 2 ! shlat = 2 ! 2 < shlat
+ ln_vorlat = .false. ! consistency of vorticity boundary condition with analytical Eqs.
+/
+!-----------------------------------------------------------------------
+&namagrif ! AGRIF zoom ("key_agrif")
+!-----------------------------------------------------------------------
+ nn_cln_update = 3 ! baroclinic update frequency
+ ln_spc_dyn = .true. ! use 0 as special value for dynamics
+ rn_sponge_tra = 2880. ! coefficient for tracer sponge layer [m2/s]
+ rn_sponge_dyn = 2880. ! coefficient for dynamics sponge layer [m2/s]
+ ln_chk_bathy = .FALSE. !
+/
+!-----------------------------------------------------------------------
+&nam_tide ! tide parameters
+!-----------------------------------------------------------------------
+ ln_tide = .false.
+ ln_tide_pot = .true. ! use tidal potential forcing
+ ln_tide_ramp= .false. !
+ rdttideramp = 0. !
+ clname(1) = 'DUMMY' ! name of constituent - all tidal components must be set in namelist_cfg
+/
+!-----------------------------------------------------------------------
+&nambdy ! unstructured open boundaries
+!-----------------------------------------------------------------------
+ ln_bdy = .false. ! Use unstructured open boundaries
+ nb_bdy = 0 ! number of open boundary sets
+ ln_coords_file = .true. ! =T : read bdy coordinates from file
+ cn_coords_file = 'coordinates.bdy.nc' ! bdy coordinates files
+ ln_mask_file = .false. ! =T : read mask from file
+ cn_mask_file = '' ! name of mask file (if ln_mask_file=.TRUE.)
+ cn_dyn2d = 'none' !
+ nn_dyn2d_dta = 0 ! = 0, bdy data are equal to the initial state
+ ! = 1, bdy data are read in 'bdydata .nc' files
+ ! = 2, use tidal harmonic forcing data from files
+ ! = 3, use external data AND tidal harmonic forcing
+ cn_dyn3d = 'none' !
+ nn_dyn3d_dta = 0 ! = 0, bdy data are equal to the initial state
+ ! = 1, bdy data are read in 'bdydata .nc' files
+ cn_tra = 'none' !
+ nn_tra_dta = 0 ! = 0, bdy data are equal to the initial state
+ ! = 1, bdy data are read in 'bdydata .nc' files
+ cn_ice_lim = 'none' !
+ nn_ice_lim_dta = 0 ! = 0, bdy data are equal to the initial state
+ ! = 1, bdy data are read in 'bdydata .nc' files
+ rn_ice_tem = 270. ! lim3 only: arbitrary temperature of incoming sea ice
+ rn_ice_sal = 10. ! lim3 only: -- salinity --
+ rn_ice_age = 30. ! lim3 only: -- age --
+
+ ln_tra_dmp =.false. ! open boudaries conditions for tracers
+ ln_dyn3d_dmp =.false. ! open boundary condition for baroclinic velocities
+ rn_time_dmp = 1. ! Damping time scale in days
+ rn_time_dmp_out = 1. ! Outflow damping time scale
+ nn_rimwidth = 10 ! width of the relaxation zone
+ ln_vol = .false. ! total volume correction (see nn_volctl parameter)
+ nn_volctl = 1 ! = 0, the total water flux across open boundaries is zero
+ nb_jpk_bdy = -1 ! number of levels in the bdy data (set < 0 if consistent with planned run)
+/
+!-----------------------------------------------------------------------
+&nambdy_dta ! open boundaries - external data
+!-----------------------------------------------------------------------
+! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F ) ! 'monthly' ! filename ! pairing ! filename !
+ bn_ssh = 'INDIAN_bdyT_u2d', 1 , 'sossheig', .true. , .false. , 'monthly' , '' , '' , ''
+ bn_u2d = 'INDIAN_bdyU_u2d', 1 , 'vobtcrtx', .true. , .false. , 'monthly' , '' , '' , ''
+ bn_v2d = 'INDIAN_bdyV_u2d', 1 , 'vobtcrty', .true. , .false. , 'monthly' , '' , '' , ''
+ bn_u3d = 'INDIAN_bdyU_u3d', 1 , 'vozocrtx', .true. , .false. , 'monthly' , '' , '' , ''
+ bn_v3d = 'INDIAN_bdyV_u3d', 1 , 'vomecrty', .true. , .false. , 'monthly' , '' , '' , ''
+ bn_tem = 'INDIAN_bdyT_tra', 1 , 'votemper', .true. , .false. , 'monthly' , '' , '' , ''
+ bn_sal = 'INDIAN_bdyT_tra', 1 , 'vosaline', .true. , .false. , 'monthly' , '' , '' , ''
+! for lim2
+! bn_frld = 'amm12_bdyT_ice', 24 , 'ileadfra', .true. , .false. , 'daily' , '' , '' , ''
+! bn_hicif = 'amm12_bdyT_ice', 24 , 'iicethic', .true. , .false. , 'daily' , '' , '' , ''
+! bn_hsnif = 'amm12_bdyT_ice', 24 , 'isnowthi', .true. , .false. , 'daily' , '' , '' , ''
+! for lim3
+! bn_a_i = 'amm12_bdyT_ice', 24 , 'ileadfra', .true. , .false. , 'daily' , '' , '' , ''
+! bn_ht_i = 'amm12_bdyT_ice', 24 , 'iicethic', .true. , .false. , 'daily' , '' , '' , ''
+! bn_ht_s = 'amm12_bdyT_ice', 24 , 'isnowthi', .true. , .false. , 'daily' , '' , '' , ''
+
+ cn_dir = 'OBC/' ! root directory for the location of the bulk files
+ ln_full_vel = .false. !
+/
+!-----------------------------------------------------------------------
+&nambdy_tide ! tidal forcing at open boundaries
+!-----------------------------------------------------------------------
+ filtide = 'bdydta/amm12_bdytide_' ! file name root of tidal forcing files
+ ln_bdytide_2ddta = .false. !
+ ln_bdytide_conj = .false. !
+/
+
+!!======================================================================
+!! *** Bottom boundary condition ***
+!!======================================================================
+!! nambfr bottom friction
+!! nambbc bottom temperature boundary condition
+!! nambbl bottom boundary layer scheme ("key_trabbl")
+!!======================================================================
+!
+!-----------------------------------------------------------------------
+&nambfr ! bottom friction (default: linear)
+!-----------------------------------------------------------------------
+ nn_bfr = 1 ! type of bottom friction : = 0 : free slip, = 1 : linear friction
+ ! = 2 : nonlinear friction
+ rn_bfri1 = 4.e-4 ! bottom drag coefficient (linear case)
+ rn_bfri2 = 1.e-3 ! bottom drag coefficient (non linear case). Minimum coeft if ln_loglayer=T
+ rn_bfri2_max= 1.e-1 ! max. bottom drag coefficient (non linear case and ln_loglayer=T)
+ rn_bfeb2 = 2.5e-3 ! bottom turbulent kinetic energy background (m2/s2)
+ rn_bfrz0 = 3.e-3 ! bottom roughness [m] if ln_loglayer=T
+ ln_bfr2d = .false. ! horizontal variation of the bottom friction coef (read a 2D mask file )
+ rn_bfrien = 50. ! local multiplying factor of bfr (ln_bfr2d=T)
+ rn_tfri1 = 4.e-4 ! top drag coefficient (linear case)
+ rn_tfri2 = 2.5e-3 ! top drag coefficient (non linear case). Minimum coeft if ln_loglayer=T
+ rn_tfri2_max= 1.e-1 ! max. top drag coefficient (non linear case and ln_loglayer=T)
+ rn_tfeb2 = 0.0 ! top turbulent kinetic energy background (m2/s2)
+ rn_tfrz0 = 3.e-3 ! top roughness [m] if ln_loglayer=T
+ ln_tfr2d = .false. ! horizontal variation of the top friction coef (read a 2D mask file )
+ rn_tfrien = 50. ! local multiplying factor of tfr (ln_tfr2d=T)
+
+ ln_bfrimp = .true. ! implicit bottom friction (requires ln_zdfexp = .false. if true)
+ ln_loglayer = .false. ! logarithmic formulation (non linear case)
+/
+!-----------------------------------------------------------------------
+&nambbc ! bottom temperature boundary condition (default: NO)
+!-----------------------------------------------------------------------
+! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F ) ! 'monthly' ! filename ! pairing ! filename !
+ sn_qgh ='geothermal_heating.nc', -12. , 'heatflow', .false. , .true. , 'yearly' , '' , '' , ''
+ !
+ ln_trabbc = .false. ! Apply a geothermal heating at the ocean bottom
+ nn_geoflx = 2 ! geothermal heat flux: = 0 no flux
+ ! = 1 constant flux
+ ! = 2 variable flux (read in geothermal_heating.nc in mW/m2)
+ rn_geoflx_cst = 86.4e-3 ! Constant value of geothermal heat flux [W/m2]
+ cn_dir = './' ! root directory for the location of the runoff files
+/
+!-----------------------------------------------------------------------
+&nambbl ! bottom boundary layer scheme ("key_trabbl")
+!-----------------------------------------------------------------------
+ nn_bbl_ldf = 1 ! diffusive bbl (=1) or not (=0)
+ nn_bbl_adv = 0 ! advective bbl (=1/2) or not (=0)
+ rn_ahtbbl = 1000. ! lateral mixing coefficient in the bbl [m2/s]
+ rn_gambbl = 10. ! advective bbl coefficient [s]
+/
+
+!!======================================================================
+!! Tracer (T & S ) namelists
+!!======================================================================
+!! nameos equation of state
+!! namtra_adv advection scheme
+!! namtra_adv_mle mixed layer eddy param. (Fox-Kemper param.)
+!! namtra_ldf lateral diffusion scheme
+!! namtra_ldfeiv eddy induced velocity param.
+!! namtra_dmp T & S newtonian damping
+!!======================================================================
+!
+!-----------------------------------------------------------------------
+&nameos ! ocean physical parameters
+!-----------------------------------------------------------------------
+ ln_teos10 = .false. ! = Use TEOS-10 equation of state
+ ln_eos80 = .false. ! = Use EOS80 equation of state
+ ln_seos = .false. ! = Use simplified equation of state (S-EOS)
+ !
+ ! ! S-EOS coefficients (ln_seos=T):
+ ! ! rd(T,S,Z)*rau0 = -a0*(1+.5*lambda*dT+mu*Z+nu*dS)*dT+b0*dS
+ rn_a0 = 1.6550e-1 ! thermal expension coefficient
+ rn_b0 = 7.6554e-1 ! saline expension coefficient
+ rn_lambda1 = 5.9520e-2 ! cabbeling coeff in T^2 (=0 for linear eos)
+ rn_lambda2 = 7.4914e-4 ! cabbeling coeff in S^2 (=0 for linear eos)
+ rn_mu1 = 1.4970e-4 ! thermobaric coeff. in T (=0 for linear eos)
+ rn_mu2 = 1.1090e-5 ! thermobaric coeff. in S (=0 for linear eos)
+ rn_nu = 2.4341e-3 ! cabbeling coeff in T*S (=0 for linear eos)
+/
+!-----------------------------------------------------------------------
+&namtra_adv ! advection scheme for tracer (default: NO advection)
+!-----------------------------------------------------------------------
+ ln_traadv_cen = .false. ! 2nd order centered scheme
+ nn_cen_h = 4 ! =2/4, horizontal 2nd order CEN / 4th order CEN
+ nn_cen_v = 4 ! =2/4, vertical 2nd order CEN / 4th order COMPACT
+ ln_traadv_fct = .false. ! FCT scheme
+ nn_fct_h = 2 ! =2/4, horizontal 2nd / 4th order
+ nn_fct_v = 2 ! =2/4, vertical 2nd / COMPACT 4th order
+ nn_fct_zts = 0 ! >=1, 2nd order FCT scheme with vertical sub-timestepping
+ ! ! (number of sub-timestep = nn_fct_zts)
+ ln_traadv_mus = .false. ! MUSCL scheme
+ ln_mus_ups = .false. ! use upstream scheme near river mouths
+ ln_traadv_ubs = .false. ! UBS scheme
+ nn_ubs_v = 2 ! =2 , vertical 2nd order FCT / COMPACT 4th order
+ ln_traadv_qck = .true. ! QUICKEST scheme
+/
+!-----------------------------------------------------------------------
+&namtra_adv_mle ! mixed layer eddy parametrisation (Fox-Kemper param) (default: NO)
+!-----------------------------------------------------------------------
+ ln_mle = .false. ! (T) use the Mixed Layer Eddy (MLE) parameterisation
+ rn_ce = 0.06 ! magnitude of the MLE (typical value: 0.06 to 0.08)
+ nn_mle = 1 ! MLE type: =0 standard Fox-Kemper ; =1 new formulation
+ rn_lf = 5.e+3 ! typical scale of mixed layer front (meters) (case rn_mle=0)
+ rn_time = 172800. ! time scale for mixing momentum across the mixed layer (seconds) (case rn_mle=0)
+ rn_lat = 20. ! reference latitude (degrees) of MLE coef. (case rn_mle=1)
+ nn_mld_uv = 0 ! space interpolation of MLD at u- & v-pts (0=min,1=averaged,2=max)
+ nn_conv = 0 ! =1 no MLE in case of convection ; =0 always MLE
+ rn_rho_c_mle= 0.01 ! delta rho criterion used to calculate MLD for FK
+/
+!-----------------------------------------------------------------------
+&namtra_ldf ! lateral diffusion scheme for tracers (default: NO diffusion)
+!-----------------------------------------------------------------------
+ ! ! Operator type:
+ ! ! no diffusion: set ln_traldf_lap=..._blp=F
+ ln_traldf_lap = .false. ! laplacian operator
+ ln_traldf_blp = .false. ! bilaplacian operator
+ !
+ ! ! Direction of action:
+ ln_traldf_lev = .false. ! iso-level
+ ln_traldf_hor = .false. ! horizontal (geopotential)
+ ln_traldf_iso = .false. ! iso-neutral (standard operator)
+ ln_traldf_triad = .false. ! iso-neutral (triad operator)
+ !
+ ! ! iso-neutral options:
+ ln_traldf_msc = .false. ! Method of Stabilizing Correction (both operators)
+ rn_slpmax = 0.01 ! slope limit (both operators)
+ ln_triad_iso = .false. ! pure horizontal mixing in ML (triad only)
+ rn_sw_triad = 1 ! =1 switching triad ; =0 all 4 triads used (triad only)
+ ln_botmix_triad = .false. ! lateral mixing on bottom (triad only)
+ !
+ ! ! Coefficients:
+ nn_aht_ijk_t = 0 ! space/time variation of eddy coef
+ ! ! =-20 (=-30) read in eddy_diffusivity_2D.nc (..._3D.nc) file
+ ! ! = 0 constant
+ ! ! = 10 F(k) =ldf_c1d
+ ! ! = 20 F(i,j) =ldf_c2d
+ ! ! = 21 F(i,j,t) =Treguier et al. JPO 1997 formulation
+ ! ! = 30 F(i,j,k) =ldf_c2d * ldf_c1d
+ ! ! = 31 F(i,j,k,t)=F(local velocity and grid-spacing)
+ rn_aht_0 = 2000. ! lateral eddy diffusivity (lap. operator) [m2/s]
+ rn_bht_0 = 1.e+12 ! lateral eddy diffusivity (bilap. operator) [m4/s]
+/
+!-----------------------------------------------------------------------
+&namtra_ldfeiv ! eddy induced velocity param. (default: NO)
+!-----------------------------------------------------------------------
+ ln_ldfeiv =.false. ! use eddy induced velocity parameterization
+ ln_ldfeiv_dia =.false. ! diagnose eiv stream function and velocities
+ rn_aeiv_0 = 2000. ! eddy induced velocity coefficient [m2/s]
+ nn_aei_ijk_t = 21 ! space/time variation of the eiv coeficient
+ ! ! =-20 (=-30) read in eddy_induced_velocity_2D.nc (..._3D.nc) file
+ ! ! = 0 constant
+ ! ! = 10 F(k) =ldf_c1d
+ ! ! = 20 F(i,j) =ldf_c2d
+ ! ! = 21 F(i,j,t) =Treguier et al. JPO 1997 formulation
+ ! ! = 30 F(i,j,k) =ldf_c2d + ldf_c1d
+/
+!-----------------------------------------------------------------------
+&namtra_dmp ! tracer: T & S newtonian damping (default: NO)
+!-----------------------------------------------------------------------
+ ln_tradmp = .false. ! add a damping termn (T) or not (F)
+ nn_zdmp = 0 ! vertical shape =0 damping throughout the water column
+ ! =1 no damping in the mixing layer (kz criteria)
+ ! =2 no damping in the mixed layer (rho crieria)
+ cn_resto ='resto.nc' ! Name of file containing restoration coeff. field (use dmp_tools to create this)
+/
+
+!!======================================================================
+!! *** Dynamics namelists ***
+!!======================================================================
+!! namdyn_adv formulation of the momentum advection
+!! namdyn_vor advection scheme
+!! namdyn_hpg hydrostatic pressure gradient
+!! namdyn_spg surface pressure gradient
+!! namdyn_ldf lateral diffusion scheme
+!!======================================================================
+!
+!-----------------------------------------------------------------------
+&namdyn_adv ! formulation of the momentum advection (default: vector form)
+!-----------------------------------------------------------------------
+ ln_dynadv_vec = .true. ! vector form (T) or flux form (F)
+ nn_dynkeg = 0 ! scheme for grad(KE): =0 C2 ; =1 Hollingsworth correction
+ ln_dynadv_cen2= .false. ! flux form - 2nd order centered scheme
+ ln_dynadv_ubs = .false. ! flux form - 3rd order UBS scheme
+ ln_dynzad_zts = .false. ! Use (T) sub timestepping for vertical momentum advection
+/
+!-----------------------------------------------------------------------
+&nam_vvl ! vertical coordinate options (default: zstar)
+!-----------------------------------------------------------------------
+ ln_vvl_zstar = .true. ! zstar vertical coordinate
+ ln_vvl_ztilde = .false. ! ztilde vertical coordinate: only high frequency variations
+ ln_vvl_layer = .false. ! full layer vertical coordinate
+ ln_vvl_ztilde_as_zstar = .false. ! ztilde vertical coordinate emulating zstar
+ ln_vvl_zstar_at_eqtor = .false. ! ztilde near the equator
+ rn_ahe3 = 0.0e0 ! thickness diffusion coefficient
+ rn_rst_e3t = 30.e0 ! ztilde to zstar restoration timescale [days]
+ rn_lf_cutoff = 5.0e0 ! cutoff frequency for low-pass filter [days]
+ rn_zdef_max = 0.9e0 ! maximum fractional e3t deformation
+ ln_vvl_dbg = .true. ! debug prints (T/F)
+/
+!-----------------------------------------------------------------------
+&namdyn_vor ! Vorticity / Coriolis scheme (default: NO)
+!-----------------------------------------------------------------------
+ ln_dynvor_ene = .false. ! enstrophy conserving scheme
+ ln_dynvor_ens = .false. ! energy conserving scheme
+ ln_dynvor_mix = .false. ! mixed scheme
+ ln_dynvor_een = .false. ! energy & enstrophy scheme
+ nn_een_e3f = 1 ! e3f = masked averaging of e3t divided by 4 (=0) or by the sum of mask (=1)
+ ln_dynvor_msk = .false. ! vorticity multiplied by fmask (=T) or not (=F) (all vorticity schemes) ! PLEASE DO NOT ACTIVATE
+/
+!-----------------------------------------------------------------------
+&namdyn_hpg ! Hydrostatic pressure gradient option (default: zps)
+!-----------------------------------------------------------------------
+ ln_hpg_zco = .false. ! z-coordinate - full steps
+ ln_hpg_zps = .false. ! z-coordinate - partial steps (interpolation)
+ ln_hpg_sco = .false. ! s-coordinate (standard jacobian formulation)
+ ln_hpg_isf = .false. ! s-coordinate (sco ) adapted to isf
+ ln_hpg_djc = .false. ! s-coordinate (Density Jacobian with Cubic polynomial)
+ ln_hpg_prj = .false. ! s-coordinate (Pressure Jacobian scheme)
+/
+!-----------------------------------------------------------------------
+&namdyn_spg ! surface pressure gradient (default: NO)
+!-----------------------------------------------------------------------
+ ln_dynspg_exp = .false. ! explicit free surface
+ ln_dynspg_ts = .false. ! split-explicit free surface
+ ln_bt_fw = .true. ! Forward integration of barotropic Eqs.
+ ln_bt_av = .true. ! Time filtering of barotropic variables
+ nn_bt_flt = 1 ! Time filter choice = 0 None
+ ! ! = 1 Boxcar over nn_baro sub-steps
+ ! ! = 2 Boxcar over 2*nn_baro " "
+ ln_bt_auto = .true. ! Number of sub-step defined from:
+ rn_bt_cmax = 0.8 ! =T : the Maximum Courant Number allowed
+ nn_baro = 30 ! =F : the number of sub-step in rn_rdt seconds
+/
+!-----------------------------------------------------------------------
+&namdyn_ldf ! lateral diffusion on momentum (default: NO)
+!-----------------------------------------------------------------------
+ ! ! Type of the operator :
+ ! ! no diffusion: set ln_dynldf_lap=..._blp=F
+ ln_dynldf_lap = .false. ! laplacian operator
+ ln_dynldf_blp = .false. ! bilaplacian operator
+ ! ! Direction of action :
+ ln_dynldf_lev = .false. ! iso-level
+ ln_dynldf_hor = .false. ! horizontal (geopotential)
+ ln_dynldf_iso = .false. ! iso-neutral
+ ! ! Coefficient
+ nn_ahm_ijk_t = 0 ! space/time variation of eddy coef
+ ! ! =-30 read in eddy_viscosity_3D.nc file
+ ! ! =-20 read in eddy_viscosity_2D.nc file
+ ! ! = 0 constant
+ ! ! = 10 F(k)=c1d
+ ! ! = 20 F(i,j)=F(grid spacing)=c2d
+ ! ! = 30 F(i,j,k)=c2d*c1d
+ ! ! = 31 F(i,j,k)=F(grid spacing and local velocity)
+ ! ! = 32 F(i,j,k)=F(local gridscale and deformation rate)
+ ! Caution in 20 and 30 cases the coefficient have to be given for a 1 degree grid (~111km)
+ rn_ahm_0 = 40000. ! horizontal laplacian eddy viscosity [m2/s]
+ rn_ahm_b = 0. ! background eddy viscosity for ldf_iso [m2/s]
+ rn_bhm_0 = 1.e+12 ! horizontal bilaplacian eddy viscosity [m4/s]
+ ! ! Smagorinsky settings (nn_ahm_ijk_t = 32) :
+ rn_csmc = 3.5 ! Smagorinsky constant of proportionality
+ rn_minfac = 1.0 ! multiplier of theorectical lower limit
+ rn_maxfac = 1.0 ! multiplier of theorectical upper limit
+/
+
+!!======================================================================
+!! Tracers & Dynamics vertical physics namelists
+!!======================================================================
+!! namzdf vertical physics
+!! namzdf_ric richardson number dependent vertical mixing ("key_zdfric")
+!! namzdf_tke TKE dependent vertical mixing ("key_zdftke")
+!! namzdf_gls GLS vertical mixing ("key_zdfgls")
+!! namzdf_ddm double diffusive mixing parameterization ("key_zdfddm")
+!! namzdf_tmx tidal mixing parameterization ("key_zdftmx")
+!!======================================================================
+!
+!-----------------------------------------------------------------------
+&namzdf ! vertical physics
+!-----------------------------------------------------------------------
+ rn_avm0 = 1.2e-4 ! vertical eddy viscosity [m2/s] (background Kz if not "key_zdfcst")
+ rn_avt0 = 1.2e-5 ! vertical eddy diffusivity [m2/s] (background Kz if not "key_zdfcst")
+ nn_avb = 0 ! profile for background avt & avm (=1) or not (=0)
+ nn_havtb = 0 ! horizontal shape for avtb (=1) or not (=0)
+ ln_zdfevd = .true. ! enhanced vertical diffusion (evd) (T) or not (F)
+ nn_evdm = 0 ! evd apply on tracer (=0) or on tracer and momentum (=1)
+ rn_avevd = 100. ! evd mixing coefficient [m2/s]
+ ln_zdfnpc = .false. ! Non-Penetrative Convective algorithm (T) or not (F)
+ nn_npc = 1 ! frequency of application of npc
+ nn_npcp = 365 ! npc control print frequency
+ ln_zdfexp = .false. ! time-stepping: split-explicit (T) or implicit (F) time stepping
+ nn_zdfexp = 3 ! number of sub-timestep for ln_zdfexp=T
+ ln_zdfqiao = .false. ! Enhanced wave vertical mixing Qiao (2010) (T => ln_wave=.true. & ln_sdw=.true. & fill namsbc_wave)
+/
+!-----------------------------------------------------------------------
+&namzdf_ric ! richardson number dependent vertical diffusion ("key_zdfric" )
+!-----------------------------------------------------------------------
+ rn_avmri = 100.e-4 ! maximum value of the vertical viscosity
+ rn_alp = 5. ! coefficient of the parameterization
+ nn_ric = 2 ! coefficient of the parameterization
+ rn_ekmfc = 0.7 ! Factor in the Ekman depth Equation
+ rn_mldmin = 1.0 ! minimum allowable mixed-layer depth estimate (m)
+ rn_mldmax = 1000.0 ! maximum allowable mixed-layer depth estimate (m)
+ rn_wtmix = 10.0 ! vertical eddy viscosity coeff [m2/s] in the mixed-layer
+ rn_wvmix = 10.0 ! vertical eddy diffusion coeff [m2/s] in the mixed-layer
+ ln_mldw = .true. ! Flag to use or not the mixed layer depth param.
+/
+!-----------------------------------------------------------------------
+&namzdf_tke ! turbulent eddy kinetic dependent vertical diffusion ("key_zdftke")
+!-----------------------------------------------------------------------
+ rn_ediff = 0.1 ! coef. for vertical eddy coef. (avt=rn_ediff*mxl*sqrt(e) )
+ rn_ediss = 0.7 ! coef. of the Kolmogoroff dissipation
+ rn_ebb = 67.83 ! coef. of the surface input of tke (=67.83 suggested when ln_mxl0=T)
+ rn_emin = 1.e-6 ! minimum value of tke [m2/s2]
+ rn_emin0 = 1.e-4 ! surface minimum value of tke [m2/s2]
+ rn_bshear = 1.e-20 ! background shear (>0) currently a numerical threshold (do not change it)
+ nn_mxl = 2 ! mixing length: = 0 bounded by the distance to surface and bottom
+ ! = 1 bounded by the local vertical scale factor
+ ! = 2 first vertical derivative of mixing length bounded by 1
+ ! = 3 as =2 with distinct disspipative an mixing length scale
+ nn_pdl = 1 ! Prandtl number function of richarson number (=1, avt=pdl(Ri)*avm) or not (=0, avt=avm)
+ ln_mxl0 = .true. ! surface mixing length scale = F(wind stress) (T) or not (F)
+ rn_mxl0 = 0.04 ! surface buoyancy lenght scale minimum value
+ ln_lc = .true. ! Langmuir cell parameterisation (Axell 2002)
+ rn_lc = 0.15 ! coef. associated to Langmuir cells
+ nn_etau = 1 ! penetration of tke below the mixed layer (ML) due to near intertial waves
+ ! = 0 no penetration
+ ! = 1 add a tke source below the ML
+ ! = 2 add a tke source just at the base of the ML
+ ! = 3 as = 1 applied on HF part of the stress (ln_cpl=T)
+ rn_efr = 0.05 ! fraction of surface tke value which penetrates below the ML (nn_etau=1 or 2)
+ nn_htau = 1 ! type of exponential decrease of tke penetration below the ML
+ ! = 0 constant 10 m length scale
+ ! = 1 0.5m at the equator to 30m poleward of 40 degrees
+/
+!-----------------------------------------------------------------------
+&namzdf_gls ! GLS vertical diffusion ("key_zdfgls")
+!-----------------------------------------------------------------------
+ rn_emin = 1.e-7 ! minimum value of e [m2/s2]
+ rn_epsmin = 1.e-12 ! minimum value of eps [m2/s3]
+ ln_length_lim = .true. ! limit on the dissipation rate under stable stratification (Galperin et al., 1988)
+ rn_clim_galp = 0.267 ! galperin limit
+ ln_sigpsi = .true. ! Activate or not Burchard 2001 mods on psi schmidt number in the wb case
+ rn_crban = 100. ! Craig and Banner 1994 constant for wb tke flux
+ rn_charn = 70000. ! Charnock constant for wb induced roughness length
+ rn_hsro = 0.02 ! Minimum surface roughness
+ rn_frac_hs = 1.3 ! Fraction of wave height as roughness (if nn_z0_met=2)
+ nn_z0_met = 2 ! Method for surface roughness computation (0/1/2/3)
+ ! ! =3 requires ln_wave=T
+ nn_bc_surf = 1 ! surface condition (0/1=Dir/Neum)
+ nn_bc_bot = 1 ! bottom condition (0/1=Dir/Neum)
+ nn_stab_func = 2 ! stability function (0=Galp, 1= KC94, 2=CanutoA, 3=CanutoB)
+ nn_clos = 1 ! predefined closure type (0=MY82, 1=k-eps, 2=k-w, 3=Gen)
+/
+!-----------------------------------------------------------------------
+&namzdf_ddm ! double diffusive mixing parameterization ("key_zdfddm")
+!-----------------------------------------------------------------------
+ rn_avts = 1.e-4 ! maximum avs (vertical mixing on salinity)
+ rn_hsbfr = 1.6 ! heat/salt buoyancy flux ratio
+/
+!-----------------------------------------------------------------------
+&namzdf_tmx ! tidal mixing parameterization ("key_zdftmx")
+!-----------------------------------------------------------------------
+ rn_htmx = 500. ! vertical decay scale for turbulence (meters)
+ rn_n2min = 1.e-8 ! threshold of the Brunt-Vaisala frequency (s-1)
+ rn_tfe = 0.333 ! tidal dissipation efficiency
+ rn_me = 0.2 ! mixing efficiency
+ ln_tmx_itf = .true. ! ITF specific parameterisation
+ rn_tfe_itf = 1. ! ITF tidal dissipation efficiency
+/
+!-----------------------------------------------------------------------
+&namzdf_tmx_new ! internal wave-driven mixing parameterization ("key_zdftmx_new" & "key_zdfddm")
+!-----------------------------------------------------------------------
+ nn_zpyc = 1 ! pycnocline-intensified dissipation scales as N (=1) or N^2 (=2)
+ ln_mevar = .true. ! variable (T) or constant (F) mixing efficiency
+ ln_tsdiff = .true. ! account for differential T/S mixing (T) or not (F)
+/
+!!======================================================================
+!! *** Miscellaneous namelists ***
+!!======================================================================
+!! nammpp Massively Parallel Processing ("key_mpp_mpi)
+!! namctl Control prints
+!! namsto Stochastic parametrization of EOS
+!!======================================================================
+!
+!-----------------------------------------------------------------------
+&nammpp ! Massively Parallel Processing ("key_mpp_mpi)
+!-----------------------------------------------------------------------
+ cn_mpi_send = 'I' ! mpi send/recieve type ='S', 'B', or 'I' for standard send,
+ ! buffer blocking send or immediate non-blocking sends, resp.
+ nn_buffer = 0 ! size in bytes of exported buffer ('B' case), 0 no exportation
+ ln_nnogather= .false. ! activate code to avoid mpi_allgather use at the northfold
+ jpni = 0 ! jpni number of processors following i (set automatically if < 1)
+ jpnj = 0 ! jpnj number of processors following j (set automatically if < 1)
+ jpnij = 0 ! jpnij number of local domains (set automatically if < 1)
+/
+!-----------------------------------------------------------------------
+&namctl ! Control prints
+!-----------------------------------------------------------------------
+ ln_ctl = .false. ! trends control print (expensive!)
+ nn_print = 0 ! level of print (0 no extra print)
+ nn_ictls = 0 ! start i indice of control sum (use to compare mono versus
+ nn_ictle = 0 ! end i indice of control sum multi processor runs
+ nn_jctls = 0 ! start j indice of control over a subdomain)
+ nn_jctle = 0 ! end j indice of control
+ nn_isplt = 1 ! number of processors in i-direction
+ nn_jsplt = 1 ! number of processors in j-direction
+ nn_timing = 0 ! timing by routine activated (=1) creates timing.output file, or not (=0)
+ nn_diacfl = 0 ! Write out CFL diagnostics (=1) in cfl_diagnostics.ascii, or not (=0)
+/
+!-----------------------------------------------------------------------
+&namsto ! Stochastic parametrization of EOS (default: NO)
+!-----------------------------------------------------------------------
+ ln_sto_eos = .false. ! stochastic equation of state
+ nn_sto_eos = 1 ! number of independent random walks
+ rn_eos_stdxy= 1.4 ! random walk horz. standard deviation (in grid points)
+ rn_eos_stdz = 0.7 ! random walk vert. standard deviation (in grid points)
+ rn_eos_tcor = 1440. ! random walk time correlation (in timesteps)
+ nn_eos_ord = 1 ! order of autoregressive processes
+ nn_eos_flt = 0 ! passes of Laplacian filter
+ rn_eos_lim = 2.0 ! limitation factor (default = 3.0)
+ ln_rststo = .false. ! start from mean parameter (F) or from restart file (T)
+ ln_rstseed = .true. ! read seed of RNG from restart file
+ cn_storst_in = "restart_sto" ! suffix of stochastic parameter restart file (input)
+ cn_storst_out = "restart_sto" ! suffix of stochastic parameter restart file (output)
+/
+
+!!======================================================================
+!! *** Diagnostics namelists ***
+!!======================================================================
+!! namtrd dynamics and/or tracer trends (default F)
+!! namptr Poleward Transport Diagnostics (default F)
+!! namhsb Heat and salt budgets (default F)
+!! namdiu Cool skin and warm layer models (default F)
+!! namdiu Cool skin and warm layer models (default F)
+!! namflo float parameters ("key_float")
+!! nam_diaharm Harmonic analysis of tidal constituents ("key_diaharm")
+!! namdct transports through some sections ("key_diadct")
+!! nam_diatmb Top Middle Bottom Output (default F)
+!! nam_dia25h 25h Mean Output (default F)
+!! namnc4 netcdf4 chunking and compression settings ("key_netcdf4")
+!!======================================================================
+!
+!-----------------------------------------------------------------------
+&namtrd ! trend diagnostics (default F)
+!-----------------------------------------------------------------------
+ ln_glo_trd = .false. ! (T) global domain averaged diag for T, T^2, KE, and PE
+ ln_dyn_trd = .false. ! (T) 3D momentum trend output
+ ln_dyn_mxl = .false. ! (T) 2D momentum trends averaged over the mixed layer (not coded yet)
+ ln_vor_trd = .false. ! (T) 2D barotropic vorticity trends (not coded yet)
+ ln_KE_trd = .false. ! (T) 3D Kinetic Energy trends
+ ln_PE_trd = .false. ! (T) 3D Potential Energy trends
+ ln_tra_trd = .false. ! (T) 3D tracer trend output
+ ln_tra_mxl = .false. ! (T) 2D tracer trends averaged over the mixed layer (not coded yet)
+ nn_trd = 365 ! print frequency (ln_glo_trd=T) (unit=time step)
+/
+!!gm nn_ctls = 0 ! control surface type in mixed-layer trends (0,1 or n<jpk)
+!!gm rn_ucf = 1. ! unit conversion factor (=1 -> /seconds ; =86400. -> /day)
+!!gm cn_trdrst_in = "restart_mld" ! suffix of ocean restart name (input)
+!!gm cn_trdrst_out = "restart_mld" ! suffix of ocean restart name (output)
+!!gm ln_trdmld_restart = .false. ! restart for ML diagnostics
+!!gm ln_trdmld_instant = .false. ! flag to diagnose trends of instantantaneous or mean ML T/S
+!!gm
+!-----------------------------------------------------------------------
+&namptr ! Poleward Transport Diagnostic (default F)
+!-----------------------------------------------------------------------
+ ln_diaptr = .false. ! Poleward heat and salt transport (T) or not (F)
+ ln_subbas = .false. ! Atlantic/Pacific/Indian basins computation (T) or not
+/
+!-----------------------------------------------------------------------
+&namhsb ! Heat and salt budgets (default F)
+!-----------------------------------------------------------------------
+ ln_diahsb = .false. ! check the heat and salt budgets (T) or not (F)
+/
+!-----------------------------------------------------------------------
+&namdiu ! Cool skin and warm layer models (default F)
+!-----------------------------------------------------------------------
+ ln_diurnal = .false. !
+ ln_diurnal_only = .false. !
+/
+!-----------------------------------------------------------------------
+&namflo ! float parameters ("key_float")
+!-----------------------------------------------------------------------
+ jpnfl = 1 ! total number of floats during the run
+ jpnnewflo = 0 ! number of floats for the restart
+ ln_rstflo = .false. ! float restart (T) or not (F)
+ nn_writefl = 75 ! frequency of writing in float output file
+ nn_stockfl = 5475 ! frequency of creation of the float restart file
+ ln_argo = .false. ! Argo type floats (stay at the surface each 10 days)
+ ln_flork4 = .false. ! trajectories computed with a 4th order Runge-Kutta (T)
+ ! ! or computed with Blanke' scheme (F)
+ ln_ariane = .true. ! Input with Ariane tool convention(T)
+ ln_flo_ascii= .true. ! Output with Ariane tool netcdf convention(F) or ascii file (T)
+/
+!-----------------------------------------------------------------------
+&nam_diaharm ! Harmonic analysis of tidal constituents ("key_diaharm")
+!-----------------------------------------------------------------------
+ nit000_han = 1 ! First time step used for harmonic analysis
+ nitend_han = 75 ! Last time step used for harmonic analysis
+ nstep_han = 15 ! Time step frequency for harmonic analysis
+ tname(1) = 'M2' ! Name of tidal constituents
+ tname(2) = 'K1'
+/
+!-----------------------------------------------------------------------
+&namdct ! transports through some sections ("key_diadct")
+!-----------------------------------------------------------------------
+ nn_dct = 15 ! time step frequency for transports computing
+ nn_dctwri = 15 ! time step frequency for transports writing
+ nn_secdebug= 112 ! 0 : no section to debug
+ ! ! -1 : debug all section
+ ! ! 0 < n : debug section number n
+/
+!-----------------------------------------------------------------------
+&nam_diatmb ! Top Middle Bottom Output (default F)
+!-----------------------------------------------------------------------
+ ln_diatmb = .false. ! Choose Top Middle and Bottom output or not
+/
+!-----------------------------------------------------------------------
+&nam_dia25h ! 25h Mean Output (default F)
+!-----------------------------------------------------------------------
+ ln_dia25h = .false. ! Choose 25h mean output or not
+/
+!-----------------------------------------------------------------------
+&namnc4 ! netcdf4 chunking and compression settings ("key_netcdf4")
+!-----------------------------------------------------------------------
+ nn_nchunks_i= 4 ! number of chunks in i-dimension
+ nn_nchunks_j= 4 ! number of chunks in j-dimension
+ nn_nchunks_k= 31 ! number of chunks in k-dimension
+ ! ! setting nn_nchunks_k = jpk will give a chunk size of 1 in the vertical which
+ ! ! is optimal for postprocessing which works exclusively with horizontal slabs
+ ln_nc4zip = .true. ! (T) use netcdf4 chunking and compression
+ ! ! (F) ignore chunking information and produce netcdf3-compatible files
+/
+
+!!======================================================================
+!! *** Observation & Assimilation ***
+!!======================================================================
+!! namobs observation and model comparison
+!! nam_asminc assimilation increments ('key_asminc')
+!!======================================================================
+!
+!-----------------------------------------------------------------------
+&namobs ! observation usage switch
+!-----------------------------------------------------------------------
+ ln_diaobs = .false. ! Logical switch for the observation operator
+ ln_t3d = .false. ! Logical switch for T profile observations
+ ln_s3d = .false. ! Logical switch for S profile observations
+ ln_sla = .false. ! Logical switch for SLA observations
+ ln_sst = .false. ! Logical switch for SST observations
+ ln_sic = .false. ! Logical switch for Sea Ice observations
+ ln_vel3d = .false. ! Logical switch for velocity observations
+ ln_altbias = .false. ! Logical switch for altimeter bias correction
+ ln_nea = .false. ! Logical switch for rejection of observations near land
+ ln_grid_global = .true. ! Logical switch for global distribution of observations
+ ln_grid_search_lookup = .false. ! Logical switch for obs grid search w/lookup table
+ ln_ignmis = .true. ! Logical switch for ignoring missing files
+ ln_s_at_t = .false. ! Logical switch for computing model S at T obs if not there
+ ln_sstnight = .false. ! Logical switch for calculating night-time average for SST obs
+! All of the *files* variables below are arrays. Use namelist_cfg to add more files
+ cn_profbfiles = 'profiles_01.nc' ! Profile feedback input observation file names
+ cn_slafbfiles = 'sla_01.nc' ! SLA feedback input observation file names
+ cn_sstfbfiles = 'sst_01.nc' ! SST feedback input observation file names
+ cn_sicfbfiles = 'sic_01.nc' ! SIC feedback input observation file names
+ cn_velfbfiles = 'vel_01.nc' ! Velocity feedback input observation file names
+ cn_altbiasfile = 'altbias.nc' ! Altimeter bias input file name
+ cn_gridsearchfile='gridsearch.nc' ! Grid search file name
+ rn_gridsearchres = 0.5 ! Grid search resolution
+ rn_dobsini = 00010101.000000 ! Initial date in window YYYYMMDD.HHMMSS
+ rn_dobsend = 00010102.000000 ! Final date in window YYYYMMDD.HHMMSS
+ nn_1dint = 0 ! Type of vertical interpolation method
+ nn_2dint = 0 ! Type of horizontal interpolation method
+ nn_msshc = 0 ! MSSH correction scheme
+ rn_mdtcorr = 1.61 ! MDT correction
+ rn_mdtcutoff = 65.0 ! MDT cutoff for computed correction
+ nn_profdavtypes = -1 ! Profile daily average types - array
+ ln_sstbias = .false. !
+ cn_sstbias_files = 'sstbias.nc' !
+/
+!-----------------------------------------------------------------------
+&nam_asminc ! assimilation increments ('key_asminc')
+!-----------------------------------------------------------------------
+ ln_bkgwri = .false. ! Logical switch for writing out background state
+ ln_trainc = .false. ! Logical switch for applying tracer increments
+ ln_dyninc = .false. ! Logical switch for applying velocity increments
+ ln_sshinc = .false. ! Logical switch for applying SSH increments
+ ln_asmdin = .false. ! Logical switch for Direct Initialization (DI)
+ ln_asmiau = .false. ! Logical switch for Incremental Analysis Updating (IAU)
+ nitbkg = 0 ! Timestep of background in [0,nitend-nit000-1]
+ nitdin = 0 ! Timestep of background for DI in [0,nitend-nit000-1]
+ nitiaustr = 1 ! Timestep of start of IAU interval in [0,nitend-nit000-1]
+ nitiaufin = 15 ! Timestep of end of IAU interval in [0,nitend-nit000-1]
+ niaufn = 0 ! Type of IAU weighting function
+ ln_salfix = .false. ! Logical switch for ensuring that the sa > salfixmin
+ salfixmin = -9999 ! Minimum salinity after applying the increments
+ nn_divdmp = 0 ! Number of iterations of divergence damping operator
+/
diff --git a/EXP_Apr19/run_script.pbs b/EXP_Apr19/run_script.pbs
new file mode 100755
index 0000000..8d6cc0c
--- /dev/null
+++ b/EXP_Apr19/run_script.pbs
@@ -0,0 +1,41 @@
+#!/bin/bash
+# ---------------------------
+#===============================================================
+# CLUSTER BITS
+#===============================================================
+#PBS -N BoBEAS
+#PBS -l select=21
+#PBS -l walltime=00:20:00
+#PBS -A n01-ACCORD
+#PBS -j oe
+#PBS -r n
+# mail alert at (b)eginning, (e)nd and (a)bortion of execution
+#PBS -m bea
+#PBS -M jelt@noc.ac.uk
+
+module swap PrgEnv-cray PrgEnv-intel
+module load cray-netcdf-hdf5parallel
+module load cray-hdf5-parallel
+
+export PBS_O_WORKDIR=$(readlink -f $PBS_O_WORKDIR)
+# Change to the direcotry that the job was submitted from
+cd $PBS_O_WORKDIR
+
+
+# Set the number of threads to 1
+# This prevents any system libraries from automatically
+# using threading.
+export OMP_NUM_THREADS=1
+# Change to the directory that the job was submitted from
+ulimit -s unlimited
+ulimit -c unlimited
+
+export NEMOproc=480 #550
+export XIOSproc=1
+
+#===============================================================
+# LAUNCH JOB
+#===============================================================
+echo `date` : Launch Job
+aprun -b -n 5 -N 5 ./xios_server.exe : -n $NEMOproc -N 24 ./opa
+exit
--
GitLab
From 7c7f5891903425699163539ef049b0cd36608b2f Mon Sep 17 00:00:00 2001
From: Dr Jeff Polton <jpolton@gmail.com>
Date: Sat, 18 May 2019 12:47:04 +0100
Subject: [PATCH 05/18] fixed an issue with parent and child having different
numbers of levels
---
.../INITIAL_CONDITION/initcd_vosaline.namelist | 10 +++++-----
.../INITIAL_CONDITION/initcd_votemper.namelist | 10 +++++-----
.../namelist_reshape_bilin_initcd_vosaline | 2 +-
.../namelist_reshape_bilin_initcd_votemper | 2 +-
4 files changed, 12 insertions(+), 12 deletions(-)
diff --git a/NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/initcd_vosaline.namelist b/NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/initcd_vosaline.namelist
index 67f32f8..153dbd1 100755
--- a/NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/initcd_vosaline.namelist
+++ b/NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/initcd_vosaline.namelist
@@ -99,16 +99,16 @@
&ninput
ivect = 0
lregin = T
-cf_in = './initcd_vosaline.nc'
+cf_in = './initcd_origz_vosaline.nc'
cv_in = 'vosaline'
cv_t_in = 'time_counter'
jt1 = 0
jt2 = 0
jplev = 0
-cf_x_in = './initcd_vosaline.nc'
+cf_x_in = './initcd_origz_vosaline.nc'
cv_lon_in = 'x'
cv_lat_in = 'y'
-cf_lsm_in = 'sosie_initcd_mask.nc'
+cf_lsm_in = 'initcd_origz_mask.nc'
cv_lsm_in = 'mask'
ldrown = T
ewper = -1
@@ -154,7 +154,7 @@ ismooth = 0
!! ssig_out : structure with ROMS s-coordinates parameters on output grid (see above)
!!
&n3d
-cf_z_in = 'initcd_vosaline.nc'
+cf_z_in = 'initcd_origz_vosaline.nc'
cv_z_in = 'gdept'
cf_z_out = 'domain_cfg.nc'
cv_z_out = 'nav_lev'
@@ -216,7 +216,7 @@ ctype_z_out = 'z'
!!
&nhtarget
lregout = F
-cf_x_out = 'initcd_vosaline.nc'
+cf_x_out = 'initcd_origz_vosaline.nc'
cv_lon_out = 'x'
cv_lat_out = 'y'
cf_lsm_out = ''
diff --git a/NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/initcd_votemper.namelist b/NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/initcd_votemper.namelist
index 215dd75..e37fb61 100755
--- a/NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/initcd_votemper.namelist
+++ b/NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/initcd_votemper.namelist
@@ -99,16 +99,16 @@
&ninput
ivect = 0
lregin = T
-cf_in = './initcd_votemper.nc'
+cf_in = './initcd_origz_votemper.nc'
cv_in = 'votemper'
cv_t_in = 'time_counter'
jt1 = 0
jt2 = 0
jplev = 0
-cf_x_in = './initcd_votemper.nc'
+cf_x_in = './initcd_origz_votemper.nc'
cv_lon_in = 'x'
cv_lat_in = 'y'
-cf_lsm_in = 'sosie_initcd_mask.nc'
+cf_lsm_in = 'initcd_origz_mask.nc'
cv_lsm_in = 'mask'
ldrown = T
ewper = -1
@@ -154,7 +154,7 @@ ismooth = 0
!! ssig_out : structure with ROMS s-coordinates parameters on output grid (see above)
!!
&n3d
-cf_z_in = 'initcd_votemper.nc'
+cf_z_in = 'initcd_origz_votemper.nc'
cv_z_in = 'gdept'
cf_z_out = 'domain_cfg.nc'
cv_z_out = 'nav_lev'
@@ -216,7 +216,7 @@ ctype_z_out = 'z'
!!
&nhtarget
lregout = F
-cf_x_out = 'initcd_votemper.nc'
+cf_x_out = 'initcd_origz_votemper.nc'
cv_lon_out = 'x'
cv_lat_out = 'y'
cf_lsm_out = ''
diff --git a/NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/namelist_reshape_bilin_initcd_vosaline b/NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/namelist_reshape_bilin_initcd_vosaline
index 0e467f8..b1202fc 100755
--- a/NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/namelist_reshape_bilin_initcd_vosaline
+++ b/NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/namelist_reshape_bilin_initcd_vosaline
@@ -72,7 +72,7 @@
/
&interp_outputs
- output_file = "initcd_vosaline.nc"
+ output_file = "initcd_origz_vosaline.nc"
output_mode = "create"
output_dims = 'x', 'y', 'z', 'time_counter'
output_scaling = "vosaline|1.0"
diff --git a/NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/namelist_reshape_bilin_initcd_votemper b/NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/namelist_reshape_bilin_initcd_votemper
index 73f4dc0..15589e9 100755
--- a/NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/namelist_reshape_bilin_initcd_votemper
+++ b/NAMELISTS_AND_FORTRAN_FILES/INITIAL_CONDITION/namelist_reshape_bilin_initcd_votemper
@@ -72,7 +72,7 @@
/
&interp_outputs
- output_file = "initcd_votemper.nc"
+ output_file = "initcd_origz_votemper.nc"
output_mode = "create"
output_dims = 'x', 'y', 'z', 'time_counter'
output_scaling = "votemper|1.0"
--
GitLab
From a9d205255d5b711ccd3838440ecdf0103ff9736c Mon Sep 17 00:00:00 2001
From: Dr Jeff Polton <jpolton@gmail.com>
Date: Sat, 18 May 2019 21:31:35 +0100
Subject: [PATCH 06/18] working initial condition test (no bcs)
---
EXP_Apr19/namelist_cfg | 12 ++++++------
1 file changed, 6 insertions(+), 6 deletions(-)
diff --git a/EXP_Apr19/namelist_cfg b/EXP_Apr19/namelist_cfg
index 8ba50b2..48a70c2 100755
--- a/EXP_Apr19/namelist_cfg
+++ b/EXP_Apr19/namelist_cfg
@@ -6,7 +6,7 @@
!-----------------------------------------------------------------------
cn_exp = "BoBEAS" ! experience name
nn_it000 = 1 ! 57601 ! first time step ! CHNAGE THIS TO END OF LAST RUN + 1
- nn_itend = 100 ! 218880 crashed in Apr16 ! 138240 ! last time step (std 1 day = 144) (for dt = 6 min, so 240*dt = 1 day) ! CHANGE THIS TO THIS + 56 DAYS
+ nn_itend = 14400 ! 218880 crashed in Apr16 ! 138240 ! last time step (std 1 day = 144) (for dt = 6 min, so 240*dt = 1 day) ! CHANGE THIS TO THIS + 56 DAYS
nn_date0 = 20190401 !20110717 ! date at nit_0000 (format yyyymmdd) used if ln_rstart=F or (ln_rstart=T and nn_rstctl=0 or 1)
nn_time0 = 0 ! initial time of day in hhmm
nn_leapy = 1 ! Leap year calendar (1) or not (0)
@@ -24,7 +24,7 @@
! cn_ocerst_in = "ammsurge_restart_oce" ! suffix of ocean restart name (input)
! cn_ocerst_out = "restart_oce_out" ! suffix of ocean restart name (input)
nn_istate = 0 ! output the initial state (1) or not (0)
- nn_stock = 100 ! 40320 =28days ! frequency of creation of a restart file (modulo referenced to 1) ! 28 DAYS
+ nn_stock = 14400 ! 40320 =28days ! frequency of creation of a restart file (modulo referenced to 1) ! 28 DAYS
nn_write = 10 ! 86400 ! frequency of write in the output file (modulo referenced to nit000)
/
!-----------------------------------------------------------------------
@@ -60,15 +60,15 @@
!-----------------------------------------------------------------------
! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
- sn_tem = 'initcd_votemper.nc', -1 ,'votemper', .false. , .true. , 'yearly' , '' , '' , ''
- sn_sal = 'initcd_vosaline.nc', -1 ,'vosaline', .false. , .true. , 'yearly' , '' , '' , ''
+ sn_tem = 'initcd_votemper.nc', -12 ,'votemper', .false. , .true. , 'yearly' , '' , '' , ''
+ sn_sal = 'initcd_vosaline.nc', -12 ,'vosaline', .false. , .true. , 'yearly' , '' , '' , ''
sn_dep = 'initcd_depth.nc' , -12 ,'gdept_4D', .false. , .true. , 'yearly' , '' , '' , ''
- sn_msk = 'sosie_initcd_mask.nc', -12 ,'mask', .false. , .true. , 'yearly' , '' , '' , ''
+ sn_msk = 'initcd_mask.nc', -12 ,'mask', .false. , .true. , 'yearly' , '' , '' , ''
!
cn_dir = './ICS/' ! root directory for the location of the runoff files
ln_tsd_init = .true. ! Initialisation of ocean T & S with T & S input data (T) or not (F)
- ln_tsd_interp = .true. ! Interpolation of T & S in the verticalinput data (T) or not (F)
+ ln_tsd_interp = .false. ! Interpolation of T & S in the verticalinput data (T) or not (F)
ln_tsd_tradmp = .false. ! damping of ocean T & S toward T & S input data (T) or not (F)
/
!-----------------------------------------------------------------------
--
GitLab
From 3c4c051f43cdc7a70857a3f776ded116b854ee8c Mon Sep 17 00:00:00 2001
From: Dr Jeff Polton <jpolton@gmail.com>
Date: Mon, 20 May 2019 09:00:48 +0100
Subject: [PATCH 07/18] attempt to diagnose early blow up with Ash namelist
---
EXP_Apr19/file_def_nemo.xml | 4 +++-
EXP_Apr19/namelist_cfg | 41 ++++++++++++++++++++++++++-----------
2 files changed, 32 insertions(+), 13 deletions(-)
diff --git a/EXP_Apr19/file_def_nemo.xml b/EXP_Apr19/file_def_nemo.xml
index cf06a03..a7e5ba2 100755
--- a/EXP_Apr19/file_def_nemo.xml
+++ b/EXP_Apr19/file_def_nemo.xml
@@ -12,10 +12,12 @@
<file_group id="1ts" output_freq="1ts" output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
- <file_group id="1h" output_freq="1h" output_level="10" enabled=".TRUE."> <!-- 1h files -->
+ <file_group id="1ts" output_freq="1ts" output_level="10" enabled=".TRUE."> <!-- 1h files -->
<file id="file19" name_suffix="_SSH" description="ocean T grid variables" >
<field field_ref="ssh" name="zos" />
<field field_ref="sst" name="tos" />
+ <field field_ref="ssu" name="uos" grid_ref="grid_U_2D" />
+ <field field_ref="ssv" name="vos" grid_ref="grid_V_2D" />
</file>
</file_group>
diff --git a/EXP_Apr19/namelist_cfg b/EXP_Apr19/namelist_cfg
index 48a70c2..2bf2fb2 100755
--- a/EXP_Apr19/namelist_cfg
+++ b/EXP_Apr19/namelist_cfg
@@ -6,7 +6,7 @@
!-----------------------------------------------------------------------
cn_exp = "BoBEAS" ! experience name
nn_it000 = 1 ! 57601 ! first time step ! CHNAGE THIS TO END OF LAST RUN + 1
- nn_itend = 14400 ! 218880 crashed in Apr16 ! 138240 ! last time step (std 1 day = 144) (for dt = 6 min, so 240*dt = 1 day) ! CHANGE THIS TO THIS + 56 DAYS
+ nn_itend = 100! 218880 crashed in Apr16 ! 138240 ! last time step (std 1 day = 144) (for dt = 6 min, so 240*dt = 1 day) ! CHANGE THIS TO THIS + 56 DAYS
nn_date0 = 20190401 !20110717 ! date at nit_0000 (format yyyymmdd) used if ln_rstart=F or (ln_rstart=T and nn_rstctl=0 or 1)
nn_time0 = 0 ! initial time of day in hhmm
nn_leapy = 1 ! Leap year calendar (1) or not (0)
@@ -23,8 +23,8 @@
! nn_euler = 1 ! = 0 : start with forward time step if ln_rstart=.true.
! cn_ocerst_in = "ammsurge_restart_oce" ! suffix of ocean restart name (input)
! cn_ocerst_out = "restart_oce_out" ! suffix of ocean restart name (input)
- nn_istate = 0 ! output the initial state (1) or not (0)
- nn_stock = 14400 ! 40320 =28days ! frequency of creation of a restart file (modulo referenced to 1) ! 28 DAYS
+ nn_istate = 1 ! output the initial state (1) or not (0)
+ nn_stock = 10 ! 40320 =28days ! frequency of creation of a restart file (modulo referenced to 1) ! 28 DAYS
nn_write = 10 ! 86400 ! frequency of write in the output file (modulo referenced to nit000)
/
!-----------------------------------------------------------------------
@@ -52,7 +52,7 @@
&namdom ! space and time domain (bathymetry, mesh, timestep)
!-----------------------------------------------------------------------
! ln_2d = .false. ! (=T) run in 2D barotropic mode (no tracer processes or vertical diffusion)
- rn_rdt = 60. ! time step for the dynamics (and tracer if nn_acc=0)
+ rn_rdt = 30. ! time step for the dynamics (and tracer if nn_acc=0)
/
!-----------------------------------------------------------------------
@@ -68,7 +68,7 @@
!
cn_dir = './ICS/' ! root directory for the location of the runoff files
ln_tsd_init = .true. ! Initialisation of ocean T & S with T & S input data (T) or not (F)
- ln_tsd_interp = .false. ! Interpolation of T & S in the verticalinput data (T) or not (F)
+ ln_tsd_interp = .true. ! Interpolation of T & S in the verticalinput data (T) or not (F)
ln_tsd_tradmp = .false. ! damping of ocean T & S toward T & S input data (T) or not (F)
/
!-----------------------------------------------------------------------
@@ -76,8 +76,8 @@
!-----------------------------------------------------------------------
nn_fsbc = 1 ! frequency of surface boundary condition computation
! (also = the frequency of sea-ice model call)
- ln_usr = .false.
- ln_blk = .true.
+ ln_usr = .true.
+ ln_blk = .false.
ln_apr_dyn = .false. ! Patm gradient added in ocean & ice Eqs. (T => fill namsbc_apr )
nn_ice = 0 ! =0 no ice boundary condition ,
ln_rnf = .true. ! Runoffs (T => fill namsbc_rnf)
@@ -174,7 +174,7 @@
nb_bdy = 1 ! number of open boundary sets
cn_coords_file = 'coordinates.bdy.nc' ! bdy coordinates files
cn_dyn2d = 'flather' ! was flather
- nn_dyn2d_dta = 0 ! = 0, bdy data are equal to the initial state
+ nn_dyn2d_dta = 2 ! = 0, bdy data are equal to the initial state
! = 1, bdy data are read in 'bdydata .nc' files
! = 2, use tidal harmonic forcing data from files
! = 3, use external data AND tidal harmonic forcing
@@ -271,13 +271,30 @@
ln_hpg_sco = .true. ! s-coordinate (Standard Jacobian scheme)
/
!-----------------------------------------------------------------------
-&namdyn_spg ! surface pressure gradient (CPP key only)
+&namdyn_spg ! surface pressure gradient (default: NO)
!-----------------------------------------------------------------------
- ln_dynspg_ts = .true. ! split-explicit free surface
- ln_bt_auto = .true. ! Set nn_baro automatically to be just below
- ! a user defined maximum courant number (rn_bt_cmax)
+ ln_dynspg_exp = .false. ! explicit free surface
+ ln_dynspg_ts = .true. ! split-explicit free surface
+ ln_bt_fw = .true. ! Forward integration of barotropic Eqs.
+ ln_bt_av = .true. ! Time filtering of barotropic variables
+ nn_bt_flt = 1 ! Time filter choice = 0 None
+ ! ! = 1 Boxcar over nn_baro sub-steps
+ ! ! = 2 Boxcar over 2*nn_baro " "
+ ln_bt_auto = .true. ! Number of sub-step defined from:
+ rn_bt_cmax = 0.5 ! =T : the Maximum Courant Number allowed
+ nn_baro = 30 ! =F : the number of sub-step in rn_rdt seconds
+ ln_ulimit =.true.
+ cn_ulimit = 0.9
+ cnn_ulimit = 0.54
/
!-----------------------------------------------------------------------
+!&namdyn_spg ! surface pressure gradient (CPP key only)
+!-----------------------------------------------------------------------
+! ln_dynspg_ts = .true. ! split-explicit free surface
+! ln_bt_auto = .true. ! Set nn_baro automatically to be just below
+! ! a user defined maximum courant number (rn_bt_cmax)
+!/
+!-----------------------------------------------------------------------
&namdyn_ldf ! lateral diffusion on momentum
!-----------------------------------------------------------------------
! ! Type of the operator :
--
GitLab
From fa71f137c1677eba994754e686576ca7c7790e4d Mon Sep 17 00:00:00 2001
From: Dr Jeff Polton <jpolton@gmail.com>
Date: Mon, 20 May 2019 09:30:36 +0100
Subject: [PATCH 08/18] copied namelists from Jason GCOMS BLZ run
---
EXP_Apr19/namelist_cfg | 1267 +++++++++++++++++++++++++++++++++-------
EXP_Apr19/namelist_ref | 70 ++-
2 files changed, 1081 insertions(+), 256 deletions(-)
mode change 100755 => 100644 EXP_Apr19/namelist_cfg
diff --git a/EXP_Apr19/namelist_cfg b/EXP_Apr19/namelist_cfg
old mode 100755
new mode 100644
index 2bf2fb2..c4dd9da
--- a/EXP_Apr19/namelist_cfg
+++ b/EXP_Apr19/namelist_cfg
@@ -1,424 +1,1251 @@
!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
-!! NEMO/OPA : AMM12 configuration namelist used to overwrite defaults values defined in SHARED/namelist_ref
+!! namelist_ref
!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+!! NEMO/OPA : 1 - run manager (namrun)
+!! namelists 2 - Domain (namcfg, namzgr, namdom, namtsd, namcrs, namc1d, namc1d_uvd)
+!! 3 - Surface boundary (namsbc, namsbc_flx, namsbc_blk, namsbc_sas)
+!! namsbc_cpl, namtra_qsr, namsbc_rnf,
+!! namsbc_apr, namsbc_ssr, namsbc_alb, namsbc_wave)
+!! 4 - lateral boundary (namlbc, namagrif, nambdy, nambdy_tide)
+!! 5 - bottom boundary (nambfr, nambbc, nambbl)
+!! 6 - Tracer (nameos, namtra_adv, namtra_ldf, namtra_ldfeiv, namtra_dmp)
+!! 7 - dynamics (namdyn_adv, namdyn_vor, namdyn_hpg, namdyn_spg, namdyn_ldf)
+!! 8 - Verical physics (namzdf, namzdf_ric, namzdf_tke, namzdf_ddm, namzdf_tmx, namzdf_tmx_new)
+!! 9 - diagnostics (namnc4, namtrd, namspr, namflo, namhsb, namsto)
+!! 10 - miscellaneous (nammpp, namctl)
+!! 11 - Obs & Assim (namobs, nam_asminc)
+!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+
+!!======================================================================
+!! *** Run management namelists ***
+!!======================================================================
+!! namrun parameters of the run
+!!======================================================================
+!
!-----------------------------------------------------------------------
&namrun ! parameters of the run
!-----------------------------------------------------------------------
- cn_exp = "BoBEAS" ! experience name
- nn_it000 = 1 ! 57601 ! first time step ! CHNAGE THIS TO END OF LAST RUN + 1
- nn_itend = 100! 218880 crashed in Apr16 ! 138240 ! last time step (std 1 day = 144) (for dt = 6 min, so 240*dt = 1 day) ! CHANGE THIS TO THIS + 56 DAYS
- nn_date0 = 20190401 !20110717 ! date at nit_0000 (format yyyymmdd) used if ln_rstart=F or (ln_rstart=T and nn_rstctl=0 or 1)
+ cn_exp = "BoBEAS" ! experience name
+ nn_it000 = 1 ! first time step
+ nn_itend = 100 ! 10800! 259200!133920! 10800!43200 ! 10day=14400 ! last time step (std 5475)
+ nn_date0 = 20190401 ! date at nit_0000 (format yyyymmdd) used if ln_rstart=F or (ln_rstart=T and nn_rstctl=0 or 1)
nn_time0 = 0 ! initial time of day in hhmm
nn_leapy = 1 ! Leap year calendar (1) or not (0)
- ln_rstart = .false. ! start from rest (F) or from a restart file (T)
- nn_euler = 1 ! = 0 : start with forward time step if ln_rstart=T
- nn_rstctl = 2 ! restart control ==> activated only if ln_rstart=T
+ ln_rstart = .false. ! start from rest (F) or from a restart file (T)
+ nn_euler = 1 ! = 0 : start with forward time step if ln_rstart=T
+ nn_rstctl = 2 ! restart control ==> activated only if ln_rstart=T
! ! = 0 nn_date0 read in namelist ; nn_it000 : read in namelist
! ! = 1 nn_date0 read in namelist ; nn_it000 : check consistancy between namelist and restart
! ! = 2 nn_date0 read in restart ; nn_it000 : check consistancy between namelist and restart
- cn_ocerst_in = "INDIAN_00138240_restart" ! suffix of ocean restart name (input) ! CHANGE THIS TO LAST RESTART FILE NUMBER
+ cn_ocerst_in = "__RESFILE__" ! suffix of ocean restart name (input)
cn_ocerst_indir = "./restarts" ! directory from which to read input ocean restarts
cn_ocerst_out = "restart" ! suffix of ocean restart name (output)
cn_ocerst_outdir= "./restarts" ! directory in which to write output ocean restarts
-! nn_euler = 1 ! = 0 : start with forward time step if ln_rstart=.true.
-! cn_ocerst_in = "ammsurge_restart_oce" ! suffix of ocean restart name (input)
-! cn_ocerst_out = "restart_oce_out" ! suffix of ocean restart name (input)
- nn_istate = 1 ! output the initial state (1) or not (0)
- nn_stock = 10 ! 40320 =28days ! frequency of creation of a restart file (modulo referenced to 1) ! 28 DAYS
- nn_write = 10 ! 86400 ! frequency of write in the output file (modulo referenced to nit000)
+ ln_iscpl = .false. ! cavity evolution forcing or coupling to ice sheet model
+ nn_istate = 0 ! output the initial state (1) or not (0)
+ ln_rst_list = .false. ! output restarts at list of times using nn_stocklist (T) or at set frequency with nn_stock (F)
+ nn_stock = 10 !43200 ! 14400 ! frequency of creation of a restart file (modulo referenced to 1)
+ nn_stocklist = 0,0,0,0,0,0,0,0,0,0 ! List of timesteps when a restart file is to be written
+ nn_write = 10 ! 14400 ! frequency of write in the output file (modulo referenced to nn_it000)
+ ln_mskland = .false. ! mask land points in NetCDF outputs (costly: + ~15%)
+ ln_cfmeta = .false. ! output additional data to netCDF files required for compliance with the CF metadata standard
+ ln_clobber = .true. ! clobber (overwrite) an existing file
+ nn_chunksz = 0 ! chunksize (bytes) for NetCDF file (works only with iom_nf90 routines)
/
+!
+!!======================================================================
+!! *** Domain namelists ***
+!!======================================================================
+!! namcfg parameters of the configuration
+!! namzgr vertical coordinate (default: NO selection)
+!! namdom space and time domain (bathymetry, mesh, timestep)
+!! namwad Wetting and drying (default F)
+!! namtsd data: temperature & salinity
+!! namcrs coarsened grid (for outputs and/or TOP) ("key_crs")
+!! namc1d 1D configuration options ("key_c1d")
+!! namc1d_dyndmp 1D newtonian damping applied on currents ("key_c1d")
+!! namc1d_uvd 1D data (currents) ("key_c1d")
+!!======================================================================
+!
!-----------------------------------------------------------------------
&namcfg ! parameters of the configuration
!-----------------------------------------------------------------------
ln_read_cfg = .true. ! (=T) read the domain configuration file
- ! (=F) user defined configuration ==>>> see usrdef(_...) modules
- cn_domcfg = "domain_cfg.nc" ! domain configuration filename
+ ! ! (=F) user defined configuration ==>>> see usrdef(_...) modules
+ cn_domcfg = "domain_cfg.nc" ! domain configuration filename
+ !
+ ln_write_cfg= .false. ! (=T) create the domain configuration file
+ cn_domcfg_out = "domain_cfg_out" ! newly created domain configuration filename
+ !
+ ln_use_jattr = .false. ! use (T) the file attribute: open_ocean_jstart, if present
+ ! ! in netcdf input files, as the start j-row for reading
/
!-----------------------------------------------------------------------
-!&namzgr ! vertical coordinate
-!-----------------------------------------------------------------------
-! ln_zps = .false. ! z-coordinate - partial steps (T/F)
-! ln_sco = .true. ! s- or hybrid z-s-coordinate (T/F)
-!/
+&namzgr ! vertical coordinate (default: NO selection)
!-----------------------------------------------------------------------
-!&namzgr_sco ! s-coordinate or hybrid z-s-coordinate
+ ln_zco = .false. ! z-coordinate - full steps
+ ln_zps = .false. ! z-coordinate - partial steps
+ ln_sco = .true. ! s- or hybrid z-s-coordinate
+ ln_isfcav = .false. ! ice shelf cavity
+! ln_linssh = .false. ! linear free surface
+/
!-----------------------------------------------------------------------
-! rn_sbot_min = 6.0 ! minimum depth of s-bottom surface (>0) (m)
-! rn_hc = 0.0 ! critical depth for transition to stretched coordinates
-! rn_rmax = 1.0 ! maximum cut-off r-value allowed (0<r_max<1)
-! rn_theta = 0.0 ! surface control parameter (0<=theta<=20)
-!/
+&namzgr_sco
+!-----------------------------------------------------------------------
+ ln_s_sf12=.true.,
+ ln_s_sh94=.false.,
+ ln_sigcrit=.true.,
+ rn_alpha=4.4,
+ rn_bb=0.8,
+ rn_efold=0.0,
+ rn_hc=10000.0,
+ rn_rmax=1.0,
+ rn_sbot_max=10000.0,
+ rn_sbot_min=1.0e-5,
+ rn_theta=6.0,
+ rn_thetb=1.0,
+ rn_zb_a=0.024,
+ rn_zb_b=-0.2,
+ rn_zs=1.0,
+/
!-----------------------------------------------------------------------
&namdom ! space and time domain (bathymetry, mesh, timestep)
!-----------------------------------------------------------------------
-! ln_2d = .false. ! (=T) run in 2D barotropic mode (no tracer processes or vertical diffusion)
- rn_rdt = 30. ! time step for the dynamics (and tracer if nn_acc=0)
-/
+ ln_linssh = .false. ! =T linear free surface ==>> model level are fixed in time
+ nn_closea = 0 ! remove (=0) or keep (=1) closed seas and lakes (ORCA)
+ !
+ nn_msh = 0 ! create (>0) a mesh file or not (=0)
+ rn_isfhmin = 1.00 ! treshold (m) to discriminate grounding ice to floating ice
+ !
+ rn_rdt = 60.!60.!120.!60. ! time step for the dynamics (and tracer if nn_acc=0)
+ rn_atfp = 0.1 ! asselin time filter parameter
+ !
+ ln_crs = .false. ! Logical switch for coarsening module
+! ldbletanh = .false. ! Use/do not use double tanf function for vertical coordinates
+/
!-----------------------------------------------------------------------
-&namtsd ! data : Temperature & Salinity
+&namtsd ! data : Temperature & Salinity
!-----------------------------------------------------------------------
! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
- sn_tem = 'initcd_votemper.nc', -12 ,'votemper', .false. , .true. , 'yearly' , '' , '' , ''
- sn_sal = 'initcd_vosaline.nc', -12 ,'vosaline', .false. , .true. , 'yearly' , '' , '' , ''
- sn_dep = 'initcd_depth.nc' , -12 ,'gdept_4D', .false. , .true. , 'yearly' , '' , '' , ''
- sn_msk = 'initcd_mask.nc', -12 ,'mask', .false. , .true. , 'yearly' , '' , '' , ''
-
+ sn_tem = 'initcd_votemper', -1 ,'votemper' , .false. , .true. , 'yearly' , '' , '' , ''
+ sn_sal = 'initcd_vosaline', -1 ,'vosaline' , .false. , .true. , 'yearly' , '' , '' , ''
+ !sn_dep = 'initcd_depth.nc' , -12 ,'gdept_4D', .false. , .true. , 'yearly' , '' , '' , ''
+ !sn_msk = 'initcd_mask.nc', -12 ,'mask', .false. , .true. , 'yearly' , '' , '' , ''
!
- cn_dir = './ICS/' ! root directory for the location of the runoff files
- ln_tsd_init = .true. ! Initialisation of ocean T & S with T & S input data (T) or not (F)
+ cn_dir = './ICS/' ! root directory for the location of the runoff files
+ ln_tsd_init = .true. ! Initialisation of ocean T & S with T &S input data (T) or not (F)
ln_tsd_interp = .true. ! Interpolation of T & S in the verticalinput data (T) or not (F)
- ln_tsd_tradmp = .false. ! damping of ocean T & S toward T & S input data (T) or not (F)
+ ln_tsd_tradmp = .false. ! damping of ocean T & S toward T &S input data (T) or not (F)
+/
+!-----------------------------------------------------------------------
+&namwad ! Wetting and drying (default F)
+!-----------------------------------------------------------------------
+ ln_wd = .false. ! T/F activation of wetting and drying
+ rn_wdmin1 = 0.1 ! Minimum wet depth on dried cells
+ rn_wdmin2 = 0.01 ! Tolerance of min wet depth on dried cells
+ rn_wdld = 20.0 ! Land elevation below which wetting/drying is allowed
+ nn_wdit = 10 ! Max iterations for W/D limiter
+/
+!-----------------------------------------------------------------------
+&namcrs ! coarsened grid (for outputs and/or TOP) ("key_crs")
+!-----------------------------------------------------------------------
+ nn_factx = 3 ! Reduction factor of x-direction
+ nn_facty = 3 ! Reduction factor of y-direction
+ nn_binref = 0 ! Bin centering preference: NORTH or EQUAT
+ ! 0, coarse grid is binned with preferential treatment of the north fold
+ ! 1, coarse grid is binned with centering at the equator
+ ! Symmetry with nn_facty being odd-numbered. Asymmetry with even-numbered nn_facty.
+ nn_msh_crs = 1 ! create (=1) a mesh file or not (=0)
+ nn_crs_kz = 0 ! 0, MEAN of volume boxes
+ ! 1, MAX of boxes
+ ! 2, MIN of boxes
+ ln_crs_wn = .true. ! wn coarsened (T) or computed using horizontal divergence ( F )
/
!-----------------------------------------------------------------------
+&namc1d ! 1D configuration options ("key_c1d")
+!-----------------------------------------------------------------------
+ rn_lat1d = 50 ! Column latitude (default at PAPA station)
+ rn_lon1d = -145 ! Column longitude (default at PAPA station)
+ ln_c1d_locpt= .true. ! Localization of 1D config in a grid (T) or independant point (F)
+/
+!-----------------------------------------------------------------------
+&namc1d_dyndmp ! U & V newtonian damping ("key_c1d")
+!-----------------------------------------------------------------------
+ ln_dyndmp = .false. ! add a damping term (T) or not (F)
+/
+!-----------------------------------------------------------------------
+&namc1d_uvd ! data: U & V currents ("key_c1d")
+!-----------------------------------------------------------------------
+! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
+ sn_ucur = 'ucurrent' , -1 ,'u_current', .false. , .true. , 'monthly' , '' , 'Ume' , ''
+ sn_vcur = 'vcurrent' , -1 ,'v_current', .false. , .true. , 'monthly' , '' , 'Vme' , ''
+!
+ cn_dir = './' ! root directory for the location of the files
+ ln_uvd_init = .false. ! Initialisation of ocean U & V with U & V input data (T) or not (F)
+ ln_uvd_dyndmp = .false. ! damping of ocean U & V toward U & V input data (T) or not (F)
+/
+
+!!======================================================================
+!! *** Surface Boundary Condition namelists ***
+!!======================================================================
+!! namsbc surface boundary condition
+!! namsbc_flx flux formulation (ln_flx =T)
+!! namsbc_blk Bulk formulae formulation (ln_blk =T)
+!! namsbc_cpl CouPLed formulation ("key_oasis3" )
+!! namsbc_sas Stand-Alone Surface module
+!! namtra_qsr penetrative solar radiation (ln_traqsr =T)
+!! namsbc_rnf river runoffs (ln_rnf =T)
+!! namsbc_isf ice shelf melting/freezing (nn_isf >0)
+!! namsbc_iscpl coupling option between land ice model and ocean
+!! namsbc_apr Atmospheric Pressure (ln_apr_dyn =T)
+!! namsbc_ssr sea surface restoring term (for T and/or S) (ln_ssr =T)
+!! namsbc_alb albedo parameters
+!! namsbc_wave external fields from wave model (ln_wave =T)
+!! namberg iceberg floats (ln_icebergs=T)
+!!======================================================================
+!
+!-----------------------------------------------------------------------
&namsbc ! Surface Boundary Condition (surface module)
!-----------------------------------------------------------------------
nn_fsbc = 1 ! frequency of surface boundary condition computation
- ! (also = the frequency of sea-ice model call)
- ln_usr = .true.
- ln_blk = .false.
- ln_apr_dyn = .false. ! Patm gradient added in ocean & ice Eqs. (T => fill namsbc_apr )
+ ! (also = the frequency of sea-ice & iceberg model call)
+ ! Type of air-sea fluxes
+ ln_usr = .true. ! user defined formulation (T => check usrdef_sbc)
+ ln_flx = .false. ! flux formulation (T => fill namsbc_flx )
+ ln_blk = .false. ! Bulk formulation (T => fill namsbc_blk )
+ ! Type of coupling (Ocean/Ice/Atmosphere) :
+ ln_cpl = .false. ! atmosphere coupled formulation ( requires key_oasis3 )
+ ln_mixcpl = .false. ! forced-coupled mixed formulation ( requires key_oasis3 )
+ nn_components = 0 ! configuration of the opa-sas OASIS coupling
+ ! =0 no opa-sas OASIS coupling: default single executable configuration
+ ! =1 opa-sas OASIS coupling: multi executable configuration, OPA component
+ ! =2 opa-sas OASIS coupling: multi executable configuration, SAS component
+ nn_limflx = -1 ! LIM3 Multi-category heat flux formulation (use -1 if LIM3 is not used)
+ ! =-1 Use per-category fluxes, bypass redistributor, forced mode only, not yet implemented coupled
+ ! = 0 Average per-category fluxes (forced and coupled mode)
+ ! = 1 Average and redistribute per-category fluxes, forced mode only, not yet implemented coupled
+ ! = 2 Redistribute a single flux over categories (coupled mode only)
+ ! Sea-ice :
nn_ice = 0 ! =0 no ice boundary condition ,
- ln_rnf = .true. ! Runoffs (T => fill namsbc_rnf)
- ln_ssr = .false. ! Sea Surface Restoring on T and/or S (T => fill namsbc_ssr)
- ln_traqsr = .false. ! Light penetration in the ocean (T => fill namtra_qsr)
+ ! =1 use observed ice-cover ,
+ ! =2 to 4 : ice-model used (LIM2, LIM3 or CICE) ("key_lim3", "key_lim2", or "key_cice")
+ nn_ice_embd = 1 ! =0 levitating ice (no mass exchange, concentration/dilution effect)
+ ! =1 levitating ice with mass and salt exchange but no presure effect
+ ! =2 embedded sea-ice (full salt and mass exchanges and pressure)
+ ! Misc. options of sbc :
+ ln_traqsr = .false. ! Light penetration in the ocean (T => fill namtra_qsr)
+ ln_dm2dc = .false. ! daily mean to diurnal cycle on short wave
+ ln_rnf = .true. ! runoffs (T => fill namsbc_rnf)
+ ln_ssr = .false. ! Sea Surface Restoring on T and/or S (T => fill namsbc_ssr)
nn_fwb = 0 ! FreshWater Budget: =0 unchecked
+ ! =1 global mean of e-p-r set to zero at each time step
+ ! =2 annual global mean of e-p-r set to zero
+ ln_apr_dyn = .false. ! Patm gradient added in ocean & ice Eqs. (T => fill namsbc_apr )
+ ln_isf = .false. ! ice shelf (T => fill namsbc_isf)
+ ln_wave = .false. ! Activate coupling with wave (T => fill namsbc_wave)
+ ln_cdgw = .false. ! Neutral drag coefficient read from wave model (T => ln_wave=.true. & fill namsbc_wave)
+ ln_sdw = .false. ! Read 2D Surf Stokes Drift & Computation of 3D stokes drift (T => ln_wave=.true. & fill namsbc_wave)
+ ln_tauoc = .false. ! Activate ocean stress modified by external wave induced stress (T => ln_wave=.true. & fill namsbc_wave)
+ ln_stcor = .false. ! Activate Stokes Coriolis term (T => ln_wave=.true. & ln_sdw=.true. & fill namsbc_wave)
+ nn_lsm = 0 ! =0 land/sea mask for input fields is not applied (keep empty land/sea mask filename field) ,
+ ! =1:n number of iterations of land/sea mask application for input fields (fill land/sea mask filename field)
/
+!-----------------------------------------------------------------------
+&namsbc_flx ! surface boundary condition : flux formulation
+!-----------------------------------------------------------------------
+! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
+ sn_utau = 'utau' , 24 , 'utau' , .false. , .false., 'yearly' , '' , '' , ''
+ sn_vtau = 'vtau' , 24 , 'vtau' , .false. , .false., 'yearly' , '' , '' , ''
+ sn_qtot = 'qtot' , 24 , 'qtot' , .false. , .false., 'yearly' , '' , '' , ''
+ sn_qsr = 'qsr' , 24 , 'qsr' , .false. , .false., 'yearly' , '' , '' , ''
+ sn_emp = 'emp' , 24 , 'emp' , .false. , .false., 'yearly' , '' , '' , ''
+ cn_dir = './' ! root directory for the location of the flux files
+/
+!-----------------------------------------------------------------------
+&namsbc_blk ! namsbc_blk generic Bulk formula (ln_blk = T)
+!-----------------------------------------------------------------------
+!-----------------------------------------------------------------------
+! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
+ sn_wndi = 'ERA5_U10' , 1 , 'U10', .false. , .false. , 'yearly' , 'weights_bilinear_atmos.nc' , 'Uwnd' , ''
+ sn_wndj = 'ERA5_V10' , 1 , 'V10', .false. , .false. , 'yearly' , 'weights_bilinear_atmos.nc' , 'Vwnd' , ''
+ sn_qsr = 'ERA5_MSDWSWRF' , 1 , 'MSDWSWRF', .false. , .false. , 'yearly' , 'weights_bilinear_atmos.nc' , '' , ''
+ sn_qlw = 'ERA5_MSDWLWRF' , 1 , 'MSDWLWRF', .false. , .false. , 'yearly' , 'weights_bilinear_atmos.nc' , '' , ''
+ sn_tair = 'ERA5_T2M' , 1 , 'T2M', .false. , .false. , 'yearly' , 'weights_bilinear_atmos.nc' , '' , ''
+ sn_humi = 'ERA5_SPH' , 1 , 'SPH', .false. , .false. , 'yearly' , 'weights_bilinear_atmos.nc' , '' , ''
+ sn_prec = 'ERA5_MTPR' , 1 , 'MTPR', .false. , .false. , 'yearly' , 'weights_bilinear_atmos.nc' , '' , ''
+ sn_snow = 'ERA5_MSR' , 1 , 'MSR' , .false. , .false. , 'yearly' , 'weights_bilinear_atmos.nc' , '' , ''
+ sn_slp = 'ERA5_MSL' , 1 , 'MSL' , .false. , .false. , 'yearly' , 'weights_bilinear_atmos.nc' , '' , ''
+! sn_tdif = 'taudif_core' , 24 , 'taudif' , .false. , .true. , 'yearly' , 'weights_bilinear_atmos.nc' , '' , ''
+ ! ! bulk algorithm :
+ ln_NCAR = .false. ! "NCAR" algorithm (Large and Yeager 2008)
+ ln_COARE_3p0= .true. ! "COARE 3.0" algorithm (Fairall et al. 2003)
+ ln_COARE_3p5= .false. ! "COARE 3.5" algorithm (Edson et al. 2013)
+ ln_ECMWF = .false. ! "ECMWF" algorithm (IFS cycle 31)
+ !
+ cn_dir = 'metdta/' ! root directory for the location of the bulk files
+ ln_taudif = .false. ! HF tau contribution: use "mean of stress module - module of the mean stress" data
+ rn_zqt = 2. !10. ! Air temperature and humidity reference height (m) ***val : I changed from 10 to 2 ***
+ rn_zu = 10. ! Wind vector reference height (m)
+ rn_pfac = 1. ! multiplicative factor for precipitation (total & snow)
+ rn_efac = 1. ! multiplicative factor for evaporation (0. or 1.)
+ rn_vfac = 0. ! multiplicative factor for ocean/ice velocity
+ ! in the calculation of the wind stress (0.=absolute winds or 1.=relative winds)
+ ln_Cd_L12 = .false. ! Modify the drag ice-atm and oce-atm depending on ice concentration
+ ! This parameterization is from Lupkes et al. (JGR 2012)
+/
+!-----------------------------------------------------------------------
+&namsbc_cpl ! coupled ocean/atmosphere model ("key_oasis3")
+!-----------------------------------------------------------------------
+! ! description ! multiple ! vector ! vector ! vector !
+! ! ! categories ! reference ! orientation ! grids !
+! send
+ sn_snd_temp = 'weighted oce and ice' , 'no' , '' , '' , ''
+ sn_snd_alb = 'weighted ice' , 'no' , '' , '' , ''
+ sn_snd_thick = 'none' , 'no' , '' , '' , ''
+ sn_snd_crt = 'none' , 'no' , 'spherical' , 'eastward-northward' , 'T'
+ sn_snd_co2 = 'coupled' , 'no' , '' , '' , ''
+ sn_snd_crtw = 'none' , 'no' , '' , '' , 'U,V'
+ sn_snd_ifrac = 'none' , 'no' , '' , '' , ''
+ sn_snd_wlev = 'coupled' , 'no' , '' , '' , ''
+! receive
+ sn_rcv_w10m = 'none' , 'no' , '' , '' , ''
+ sn_rcv_taumod = 'coupled' , 'no' , '' , '' , ''
+ sn_rcv_tau = 'oce only' , 'no' , 'cartesian' , 'eastward-northward', 'U,V'
+ sn_rcv_dqnsdt = 'coupled' , 'no' , '' , '' , ''
+ sn_rcv_qsr = 'oce and ice' , 'no' , '' , '' , ''
+ sn_rcv_qns = 'oce and ice' , 'no' , '' , '' , ''
+ sn_rcv_emp = 'conservative' , 'no' , '' , '' , ''
+ sn_rcv_rnf = 'coupled' , 'no' , '' , '' , ''
+ sn_rcv_cal = 'coupled' , 'no' , '' , '' , ''
+ sn_rcv_co2 = 'coupled' , 'no' , '' , '' , ''
+ sn_rcv_hsig = 'none' , 'no' , '' , '' , ''
+ sn_rcv_iceflx = 'none' , 'no' , '' , '' , ''
+ sn_rcv_mslp = 'none' , 'no' , '' , '' , ''
+ sn_rcv_phioc = 'none' , 'no' , '' , '' , ''
+ sn_rcv_sdrfx = 'none' , 'no' , '' , '' , ''
+ sn_rcv_sdrfy = 'none' , 'no' , '' , '' , ''
+ sn_rcv_wper = 'none' , 'no' , '' , '' , ''
+ sn_rcv_wnum = 'none' , 'no' , '' , '' , ''
+ sn_rcv_wstrf = 'none' , 'no' , '' , '' , ''
+ sn_rcv_wdrag = 'none' , 'no' , '' , '' , ''
+!
+ nn_cplmodel = 1 ! Maximum number of models to/from which NEMO is potentialy sending/receiving data
+ ln_usecplmask = .false. ! use a coupling mask file to merge data received from several models
+ ! ! -> file cplmask.nc with the float variable called cplmask (jpi,jpj,nn_cplmodel)
+/
+!-----------------------------------------------------------------------
+&namsbc_sas ! Stand Alone Surface boundary condition
+!-----------------------------------------------------------------------
+! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
+ l_sasread = .TRUE. ! Read fields in a file if .TRUE. , or initialize to 0. in sbcssm.F90 if .FALSE.
+ sn_usp = 'sas_grid_U', 120 , 'vozocrtx', .true. , .true. , 'yearly' , '' , '' , ''
+ sn_vsp = 'sas_grid_V', 120 , 'vomecrty', .true. , .true. , 'yearly' , '' , '' , ''
+ sn_tem = 'sas_grid_T', 120 , 'sosstsst', .true. , .true. , 'yearly' , '' , '' , ''
+ sn_sal = 'sas_grid_T', 120 , 'sosaline', .true. , .true. , 'yearly' , '' , '' , ''
+ sn_ssh = 'sas_grid_T', 120 , 'sossheig', .true. , .true. , 'yearly' , '' , '' , ''
+ sn_e3t = 'sas_grid_T', 120 , 'e3t_m' , .true. , .true. , 'yearly' , '' , '' , ''
+ sn_frq = 'sas_grid_T', 120 , 'frq_m' , .true. , .true. , 'yearly' , '' , '' , ''
+ ln_3d_uve = .true. ! specify whether we are supplying a 3D u,v and e3 field
+ ln_read_frq = .false. ! specify whether we must read frq or not
+ cn_dir = './' ! root directory for the location of the bulk files are
+/
!-----------------------------------------------------------------------
-&namsbc_usr ! namsbc_surge surge model fluxes
+&namtra_qsr ! penetrative solar radiation (ln_traqsr=T)
!-----------------------------------------------------------------------
- ln_use_sbc = .false. ! (T) to turn on surge fluxes (wind and pressure only)
- ! (F) for no fluxes (ie tide only case)
+! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
+ sn_chl ='chlorophyll', -1 , 'CHLA' , .true. , .true. , 'yearly' , '' , '' , ''
-!
-! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation !
-! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing !
-! sn_wndi = 'CARIB_u10_weights_bicubic_atmos.nc' , 1 ,'x_wind', .true. , .false. , 'daily' ,'weights_era5_INDIAN_bicubic.nc' , ''
-! sn_wndj = 'CARIB_v10_weights_bicubic_atmos.nc' , 1 ,'y_wind', .true. , .false. , 'daily' ,'weights_era5_INDIAN_bicubic.nc' , ''
- cn_dir = './FORCING/' ! root directory for the location of the bulk files
- rn_vfac = 1. ! multiplicative factor for ocean/ice velocity
- ! in the calculation of the wind stress (0.=absolute winds or 1.=relative winds)
- rn_charn_const = 0.0275
+ cn_dir = './' ! root directory for the location of the runoff files
+ ln_qsr_rgb = .true. ! RGB (Red-Green-Blue) light penetration
+ ln_qsr_2bd = .false. ! 2 bands light penetration
+ ln_qsr_bio = .false. ! bio-model light penetration
+ nn_chldta = 1 ! RGB : Chl data (=1) or cst value (=0)
+ rn_abs = 0.58 ! RGB & 2 bands: fraction of light (rn_si1)
+ rn_si0 = 0.35 ! RGB & 2 bands: shortess depth of extinction
+ rn_si1 = 23.0 ! 2 bands: longest depth of extinction
+ ln_qsr_ice = .true. ! light penetration for ice-model LIM3
/
+!-----------------------------------------------------------------------
+&namsbc_rnf ! runoffs namelist surface boundary condition (ln_rnf=T)
+!-----------------------------------------------------------------------
+! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
+ sn_rnf = 'river_test' , -1 , 'rorunoff', .true. , .true. , 'yearly' , '' , '' , ''
+ sn_cnf = 'river_test' , 0 , 'socoefr0', .false. , .true. , 'yearly' , '' , '' , ''
+ sn_s_rnf = 'runoffs' , 24 , 'rosaline', .true. , .true. , 'yearly' , '' , '' , ''
+ sn_t_rnf = 'runoffs' , 24 , 'rotemper', .true. , .true. , 'yearly' , '' , '' , ''
+ sn_dep_rnf = 'runoffs' , 0 , 'rodepth' , .false. , .true. , 'yearly' , '' , '' , ''
+ cn_dir = './' ! root directory for the location of the runoff files
+ ln_rnf_mouth= .false. ! specific treatment at rivers mouths
+ rn_hrnf = 15.e0 ! depth over which enhanced vertical mixing is used (ln_rnf_mouth=T)
+ rn_avt_rnf = 1.e-3 ! value of the additional vertical mixing coef. [m2/s] (ln_rnf_mouth=T)
+ rn_rfact = 1.e0 ! multiplicative factor for runoff
+ ln_rnf_depth= .false. ! read in depth information for runoff
+ ln_rnf_tem = .false. ! read in temperature information for runoff
+ ln_rnf_sal = .false. ! read in salinity information for runoff
+ln_rnf_depth_ini = .true. ! compute depth at initialisation from runoff file ***val : I need to activate that so that the rivers are not boiling anymore***
+ rn_rnf_max = 1.6224 ! 5.735e-4 ! max value of the runoff climatologie over global domain ( ln_rnf_depth_ini = .true )
+ rn_dep_max = 50. ! 150. ! depth over which runoffs is spread ( ln_rnf_depth_ini = .true )
+ nn_rnf_depth_file = 0 ! create (=1) a runoff depth file or not (=0)
+
+
+
+! ln_rnf_depth_ini = .false. ! compute depth at initialisation from runoff file
+! rn_rnf_max = 5.735e-4 ! max value of the runoff climatologie over global domain ( ln_rnf_depth_ini = .true )
+! rn_dep_max = 150. ! depth over which runoffs is spread ( ln_rnf_depth_ini = .true )
+! nn_rnf_depth_file = 0 ! create (=1) a runoff depth file or not (=0)
+/
!-----------------------------------------------------------------------
-&namtra_qsr ! penetrative solar radiation
+&namsbc_isf ! Top boundary layer (ISF) (nn_isf >0)
+!-----------------------------------------------------------------------
+! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
+! nn_isf == 4
+ sn_fwfisf = 'rnfisf' , -12 ,'sowflisf', .false. , .true. , 'yearly' , '' , '' , ''
+! nn_isf == 3
+ sn_rnfisf = 'rnfisf' , -12 ,'sofwfisf', .false. , .true. , 'yearly' , '' , '' , ''
+! nn_isf == 2 and 3
+ sn_depmax_isf='rnfisf' , -12 ,'sozisfmax', .false. , .true. , 'yearly' , '' , '' , ''
+ sn_depmin_isf='rnfisf' , -12 ,'sozisfmin', .false. , .true. , 'yearly' , '' , '' , ''
+! nn_isf == 2
+ sn_Leff_isf = 'rnfisf' , -12 ,'Leff' , .false. , .true. , 'yearly' , '' , '' , ''
+!
+! for all case
+ nn_isf = 0 ! ice shelf melting/freezing
+ ! 1 = presence of ISF 2 = bg03 parametrisation
+ ! 3 = rnf file for isf 4 = ISF fwf specified
+ ! option 1 and 4 need ln_isfcav = .true. (domzgr)
+! only for nn_isf = 1 or 2
+ rn_gammat0 = 1.e-4 ! gammat coefficient used in blk formula
+ rn_gammas0 = 1.e-4 ! gammas coefficient used in blk formula
+! only for nn_isf = 1 or 4
+ rn_hisf_tbl = 30. ! thickness of the top boundary layer (Losh et al. 2008)
+ ! ! 0 => thickness of the tbl = thickness of the first wet cell
+! only for nn_isf = 1
+ nn_isfblk = 1 ! 1 ISOMIP like: 2 equations formulation (Hunter et al., 2006)
+ ! ! 2 ISOMIP+ like: 3 equations formulation (Asay-Davis et al., 2015)
+ nn_gammablk = 1 ! 0 = cst Gammat (= gammat/s)
+ ! ! 1 = velocity dependend Gamma (u* * gammat/s) (Jenkins et al. 2010)
+ ! ! 2 = velocity and stability dependent Gamma (Holland et al. 1999)
+/
!-----------------------------------------------------------------------
+&namsbc_iscpl ! land ice / ocean coupling option
+!-----------------------------------------------------------------------
+ nn_drown = 10 ! number of iteration of the extrapolation loop (fill the new wet cells)
+ ln_hsb = .false. ! activate conservation module (conservation exact after a time of rn_fiscpl)
+ nn_fiscpl = 43800 ! (number of time step) conservation period (maybe should be fix to the coupling frequencey of restart frequency)
/
+!-----------------------------------------------------------------------
+&namsbc_apr ! Atmospheric pressure used as ocean forcing (ln_apr_dyn =T)
+!-----------------------------------------------------------------------
+! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
+ sn_apr = 'patm' , -1 ,'somslpre', .true. , .true. , 'yearly' , '' , '' , ''
+ cn_dir = './' ! root directory for the location of the bulk files
+ rn_pref = 101000. ! reference atmospheric pressure [N/m2]/
+ ln_ref_apr = .false. ! ref. pressure: global mean Patm (T) or a constant (F)
+ ln_apr_obc = .false. ! inverse barometer added to OBC ssh data
+/
+!-----------------------------------------------------------------------
+&namsbc_ssr ! surface boundary condition : sea surface restoring (ln_ssr=T)
+!-----------------------------------------------------------------------
+! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
+ sn_sst = 'sst_data', 24 , 'sst' , .false. , .false., 'yearly' , '' , '' , ''
+ sn_sss = 'sss_data', -1 , 'sss' , .true. , .true. , 'yearly' , '' , '' , ''
+
+ cn_dir = './' ! root directory for the location of the runoff files
+ nn_sstr = 0 ! add a retroaction term in the surface heat flux (=1) or not (=0)
+ nn_sssr = 0 ! add a damping term in the surface freshwater flux (=2)
+ ! or to SSS only (=1) or no damping term (=0)
+ rn_dqdt = -40. ! magnitude of the retroaction on temperature [W/m2/K]
+ rn_deds = -166.67 ! magnitude of the damping on salinity [mm/day]
+ ln_sssr_bnd = .true. ! flag to bound erp term (associated with nn_sssr=2)
+ rn_sssr_bnd = 4.e0 ! ABS(Max/Min) value of the damping erp term [mm/day]
+/
+!-----------------------------------------------------------------------
+&namsbc_alb ! albedo parameters
!-----------------------------------------------------------------------
-&namsbc_apr ! Atmospheric pressure used as ocean forcing or in bulk
+ nn_ice_alb = 0 ! parameterization of ice/snow albedo
+ ! 0: Shine & Henderson-Sellers (JGR 1985)
+ ! 1: "home made" based on Brandt et al. (J. Climate 2005)
+ ! and Grenfell & Perovich (JGR 2004)
+ rn_albice = 0.53 ! albedo of bare puddled ice (values from 0.49 to 0.58)
+ ! 0.53 (default) => if nn_ice_alb=0
+ ! 0.50 (default) => if nn_ice_alb=1
+/
+!-----------------------------------------------------------------------
+&namsbc_wave ! External fields from wave model
!-----------------------------------------------------------------------
-! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
-! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
- sn_apr= 'ERA5_MSL', 1 , 'air_pressure_at_sea_level' , .true. , .false., 'daily' , 'weights_era5_INDIAN_bicubic.nc' , '' , 'ERA5_LSM'
- cn_dir = './FORCING/'! root directory for the location of the bulk files
- rn_pref = 101200. ! reference atmospheric pressure [N/m2]/
- ln_ref_apr = .false. ! ref. pressure: global mean Patm (T) or a constant (F)
- ln_apr_obc = .true. ! inverse barometer added to OBC ssh data
+! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
+ sn_cdg = 'sdw_wave' , 1 , 'drag_coeff' , .true. , .false. , 'daily' , '' , '' , ''
+ sn_usd = 'sdw_wave' , 1 , 'u_sd2d' , .true. , .false. , 'daily' , '' , '' , ''
+ sn_vsd = 'sdw_wave' , 1 , 'v_sd2d' , .true. , .false. , 'daily' , '' , '' , ''
+ sn_swh = 'sdw_wave' , 1 , 'hs' , .true. , .false. , 'daily' , '' , '' , ''
+ sn_wmp = 'sdw_wave' , 1 , 'wmp' , .true. , .false. , 'daily' , '' , '' , ''
+ sn_wnum = 'sdw_wave' , 1 , 'wave_num' , .true. , .false. , 'daily' , '' , '' , ''
+ sn_tauoc = 'sdw_wave' , 1 , 'wave_stress', .true. , .false. , 'daily' , '' , '' , ''
+!
+ cn_dir = './' ! root directory for the location of drag coefficient files
/
!-----------------------------------------------------------------------
&namberg ! iceberg parameters (default: No iceberg)
!-----------------------------------------------------------------------
+ ln_icebergs = .false. ! iceberg floats or not
+ ln_bergdia = .true. ! Calculate budgets
+ nn_verbose_level = 1 ! Turn on more verbose output if level > 0
+ nn_verbose_write = 15 ! Timesteps between verbose messages
+ nn_sample_rate = 1 ! Timesteps between sampling for trajectory storage
+ ! Initial mass required for an iceberg of each class
+ rn_initial_mass = 8.8e7, 4.1e8, 3.3e9, 1.8e10, 3.8e10, 7.5e10, 1.2e11, 2.2e11, 3.9e11, 7.4e11
+ ! Proportion of calving mass to apportion to each class
+ rn_distribution = 0.24, 0.12, 0.15, 0.18, 0.12, 0.07, 0.03, 0.03, 0.03, 0.02
+ ! Ratio between effective and real iceberg mass (non-dim)
+ ! i.e. number of icebergs represented at a point
+ rn_mass_scaling = 2000, 200, 50, 20, 10, 5, 2, 1, 1, 1
+ ! thickness of newly calved bergs (m)
+ rn_initial_thickness = 40., 67., 133., 175., 250., 250., 250., 250., 250., 250.
+ rn_rho_bergs = 850. ! Density of icebergs
+ rn_LoW_ratio = 1.5 ! Initial ratio L/W for newly calved icebergs
+ ln_operator_splitting = .true. ! Use first order operator splitting for thermodynamics
+ rn_bits_erosion_fraction = 0. ! Fraction of erosion melt flux to divert to bergy bits
+ rn_sicn_shift = 0. ! Shift of sea-ice concn in erosion flux (0<sicn_shift<1)
+ ln_passive_mode = .false. ! iceberg - ocean decoupling
+ nn_test_icebergs = 10 ! Create test icebergs of this class (-1 = no)
+ ! Put a test iceberg at each gridpoint in box (lon1,lon2,lat1,lat2)
+ rn_test_box = 108.0, 116.0, -66.0, -58.0
+ rn_speed_limit = 0. ! CFL speed limit for a berg
+
+! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F ) ! 'monthly' ! filename ! pairing ! filename !
+ sn_icb = 'calving', -1 , 'calvingmask', .true. , .true. , 'yearly' , '' , '' , ''
+
+ cn_dir = './'
/
+
+!!======================================================================
+!! *** Lateral boundary condition ***
+!!======================================================================
+!! namlbc lateral momentum boundary condition
+!! namagrif agrif nested grid ( read by child model only ) ("key_agrif")
+!! nam_tide Tidal forcing
+!! nambdy Unstructured open boundaries
+!! nambdy_dta Unstructured open boundaries - external data
+!! nambdy_tide tidal forcing at open boundaries
+!!======================================================================
+!
!-----------------------------------------------------------------------
&namlbc ! lateral momentum boundary condition
!-----------------------------------------------------------------------
- rn_shlat = 0 ! shlat = 0 ! 0 < shlat < 2 ! shlat = 2 ! 2 < shlat
- ! free slip ! partial slip ! no slip ! strong slip
+ ! ! free slip ! partial slip ! no slip ! strong slip
+ rn_shlat = 2. ! shlat = 0 ! 0 < shlat < 2 ! shlat = 2 ! 2 < shlat
+ ln_vorlat = .false. ! consistency of vorticity boundary condition with analytical Eqs.
+/
+!-----------------------------------------------------------------------
+&namagrif ! AGRIF zoom ("key_agrif")
+!-----------------------------------------------------------------------
+ nn_cln_update = 3 ! baroclinic update frequency
+ ln_spc_dyn = .true. ! use 0 as special value for dynamics
+ rn_sponge_tra = 2880. ! coefficient for tracer sponge layer [m2/s]
+ rn_sponge_dyn = 2880. ! coefficient for dynamics sponge layer [m2/s]
+ ln_chk_bathy = .FALSE. !
/
-
!-----------------------------------------------------------------------
&nam_tide ! tide parameters
!-----------------------------------------------------------------------
ln_tide = .true.
- rdttideramp = 0
- clname(1) = 'M2' ! name of constituent
- clname(2) = 'K2'
- clname(3) = 'S2'
- clname(4) = 'N2'
- clname(5) = 'Q1' ! name of constituent
- clname(6) = 'O1'
- clname(7) = 'P1'
- clname(8) = 'K1'
-! clname(5) = '2N2'
-! clname(6) = 'MU2'
-! clname(7) = 'N2'
-! clname(8) = 'NU2'
-! clname(9) = 'M2'
-! clname(10) = 'L2'
-! clname(11) = 'T2'
-! clname(12) = 'S2'
-! clname(13) = 'K2'
-! clname(14) = 'M4'
-! clname(15) = '2MK6'
-! clname(16) = '2MS6'
-! clname(17) = '2SM2'
-! clname(18) = '3M2S2'
-! clname(19) = 'Lam2'
-! clname(20) = 'M6'
-! clname(21) = 'MK3'
-! clname(22) = 'MN4'
-! clname(23) = 'MNS2'
-! clname(24) = 'MO3'
-! clname(25) = 'MS4'
-! clname(26) = 'MSN2'
+ ln_tide_pot = .true. ! use tidal potential forcing
+ ln_tide_ramp= .false. !
+ rdttideramp = 1. !
+ clname(1) = 'M2' ! name of constituent - all tidal components must be set in namelist_cfg
+ clname(2) = 'S2' ! name of constituent - all tidal components must be set in namelist_cfg
+ clname(3) = 'K2' ! name of constituent - all tidal components must be set in namelist_cfg
+ clname(4) = 'O1'
+ clname(5) = 'K1'
/
!-----------------------------------------------------------------------
&nambdy ! unstructured open boundaries
!-----------------------------------------------------------------------
- ln_bdy = .true.
- nb_bdy = 1 ! number of open boundary sets
- cn_coords_file = 'coordinates.bdy.nc' ! bdy coordinates files
- cn_dyn2d = 'flather' ! was flather
- nn_dyn2d_dta = 2 ! = 0, bdy data are equal to the initial state
- ! = 1, bdy data are read in 'bdydata .nc' files
- ! = 2, use tidal harmonic forcing data from files
- ! = 3, use external data AND tidal harmonic forcing
+ ln_bdy = .true. ! Use unstructured open boundaries
+ nb_bdy = 1 ! number of open boundary sets
+ ln_coords_file = .true. ! =T : read bdy coordinates from file
+ cn_coords_file = 'coordinates.bdy.nc' ! bdy coordinates files
+ ln_mask_file = .false. ! =T : read mask from file
+ cn_mask_file = 'bdy_mask.nc' ! name of mask file (if ln_mask_file=.TRUE.)
+ cn_dyn2d = 'flather' !
+ nn_dyn2d_dta = 2 ! = 0, bdy data are equal to the initial state
+ ! = 1, bdy data are read in 'bdydata .nc' files
+ ! = 2, use tidal harmonic forcing data from files
+ ! = 3, use external data AND tidal harmonic forcing
+ cn_dyn3d = 'specified' !
+ nn_dyn3d_dta = 0 ! = 0, bdy data are equal to the initial state
+ ! = 1, bdy data are read in 'bdydata .nc' files
+ cn_tra = 'frs' !
+ nn_tra_dta = 0 ! = 0, bdy data are equal to the initial state
+ ! = 1, bdy data are read in 'bdydata .nc' files
+ cn_ice_lim = 'none' !
+ nn_ice_lim_dta = 0 ! = 0, bdy data are equal to the initial state
+ ! = 1, bdy data are read in 'bdydata .nc' files
+ rn_ice_tem = 270. ! lim3 only: arbitrary temperature of incoming sea ice
+ rn_ice_sal = 10. ! lim3 only: -- salinity --
+ rn_ice_age = 30. ! lim3 only: -- age --
- cn_dyn3d = 'frs' !
- nn_dyn3d_dta = 0 ! = 0, bdy data are equal to the initial state
- ! = 1, bdy data are read in 'bdydata .nc' files
-
-
- cn_tra = 'frs' ! 'frs'
- nn_tra_dta = 0 ! = 0, bdy data are equal to the initial state
- ! = 1, bdy data are read in 'bdydata .nc' files
- nn_rimwidth = 1 ! width of the relaxation zone
- ln_tra_dmp = .false.
+ ln_tra_dmp =.false. ! open boudaries conditions for tracers
+ ln_dyn3d_dmp =.false. ! open boundary condition for baroclinic velocities
+ rn_time_dmp = 1. ! Damping time scale in days
+ rn_time_dmp_out = 1. ! Outflow damping time scale
+ nn_rimwidth = 9 ! width of the relaxation zone
+ ln_vol = .false. ! total volume correction (see nn_volctl parameter)
+ nn_volctl = 1 ! = 0, the total water flux across open boundaries is zero
+ nb_jpk_bdy = 75 ! number of levels in the bdy data (set < 0 if consistent with planned run)
/
!-----------------------------------------------------------------------
-&nambdy_dta ! open boundaries - external data
+&nambdy_dta ! open boundaries - external data
!-----------------------------------------------------------------------
! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
! ! ! (if <0 months) ! name ! (logical) ! (T/F ) ! 'monthly' ! filename ! pairing ! filename !
- bn_ssh = 'INDIAN_bdy_SSH' , 24 , 'sossheig', .true. , .false. , 'monthly' , '' , '' , ''
- bn_u2d = 'INDIAN_bdy_U' , 24 , 'vobtcrtx', .true. , .false. , 'monthly' , '' , '' , ''
- bn_v2d = 'INDIAN_bdy_V' , 24 , 'vobtcrty', .true. , .false. , 'monthly' , '' , '' , ''
- bn_u3d = 'INDIAN_bdy_U' , 24 , 'vozocrtx', .true. , .false. , 'monthly' , '' , '' , ''
- bn_v3d = 'INDIAN_bdy_V' , 24 , 'vomecrty', .true. , .false. , 'monthly' , '' , '' , ''
- bn_tem = 'INDIAN_bdy_TEMP', 24 , 'votemper', .true. , .false. , 'monthly' , '' , '' , ''
- bn_sal = 'INDIAN_bdy_SAL' , 24 , 'vosaline', .true. , .false. , 'monthly' , '' , '' , ''
+ bn_ssh = 'GCOMS1k_LME_12_BLZE_bt_bdyT',24 , 'sossheig', .true. , .false. , 'monthly' , '' , '' , ''
+ bn_u2d = 'GCOMS1k_LME_12_BLZE_bdyU', 24 , 'vobtcrtx', .true. , .false. , 'monthly' , '' , '' , ''
+ bn_v2d = 'GCOMS1k_LME_12_BLZE_bdyV', 24 , 'vobtcrty', .true. , .false. , 'monthly' , '' , '' , ''
+ bn_u3d = 'GCOMS1k_LME_12_BLZE_bdyU' 24 , 'vozocrtx', .true. , .false. , 'monthly' , '' , '' , ''
+ bn_v3d = 'GCOMS1k_LME_12_BLZE_bdyV' 24 , 'vomecrty', .true. , .false. , 'monthly' , '' , '' , ''
+ bn_tem = 'GCOMS1k_LME_12_BLZE_bdyT' 24 , 'votemper', .true. , .false. , 'monthly' , '' , '' , ''
+ bn_sal = 'GCOMS1k_LME_12_BLZE_bdyT' 24 , 'vosaline', .true. , .false. , 'monthly' , '' , '' , ''
+! for lim2
+! bn_frld = 'amm12_bdyT_ice', 24 , 'ileadfra', .true. , .false. , 'daily' , '' , '' , ''
+! bn_hicif = 'amm12_bdyT_ice', 24 , 'iicethic', .true. , .false. , 'daily' , '' , '' , ''
+! bn_hsnif = 'amm12_bdyT_ice', 24 , 'isnowthi', .true. , .false. , 'daily' , '' , '' , ''
+! for lim3
+! bn_a_i = 'amm12_bdyT_ice', 24 , 'ileadfra', .true. , .false. , 'daily' , '' , '' , ''
+! bn_ht_i = 'amm12_bdyT_ice', 24 , 'iicethic', .true. , .false. , 'daily' , '' , '' , ''
+! bn_ht_s = 'amm12_bdyT_ice', 24 , 'isnowthi', .true. , .false. , 'daily' , '' , '' , ''
+
+ cn_dir = 'bdydta/' ! root directory for the location of the bulk files
+ ln_full_vel = .true. !
/
!-----------------------------------------------------------------------
-&nambdy_tide ! tidal forcing at open boundaries
+&nambdy_tide ! tidal forcing at open boundaries
!-----------------------------------------------------------------------
- filtide = 'TIDES/INDIAN_bdytide_rotT_' ! file name root of tidal forcing files
- ln_bdytide_2ddta = .false.
+ filtide = 'TIDES/INDIAN_bdytide_rotT_' ! file name root of tidal forcing files
+ ln_bdytide_2ddta = .false. !
ln_bdytide_conj = .false. !
/
+
+!!======================================================================
+!! *** Bottom boundary condition ***
+!!======================================================================
+!! nambfr bottom friction
+!! nambbc bottom temperature boundary condition
+!! nambbl bottom boundary layer scheme ("key_trabbl")
+!!======================================================================
+!
!-----------------------------------------------------------------------
-&nambfr ! bottom friction
+&nambfr ! bottom friction (default: linear)
!-----------------------------------------------------------------------
nn_bfr = 2 ! type of bottom friction : = 0 : free slip, = 1 : linear friction
! = 2 : nonlinear friction
- rn_bfri2 = 2.4e-3 ! bottom drag coefficient (non linear case)
- rn_bfeb2 = 0.0e0 ! bottom turbulent kinetic energy background (m2/s2)
- ln_loglayer = .false. ! loglayer bottom friction (only effect when nn_bfr = 2)
- rn_bfrz0 = 0.003 ! bottom roughness (only effect when ln_loglayer = .true.)
+ rn_bfri2 = 2.5e-3 ! bottom drag coefficient (non linear case). Minimum coeft if ln_loglayer=T
+ rn_bfri2_max= 1.e-1 ! max. bottom drag coefficient (non linear case and ln_loglayer=T)
+ rn_bfeb2 = 0.0e-3 ! bottom turbulent kinetic energy background (m2/s2)
+ rn_bfrz0 = 3.e-3 ! bottom roughness [m] if ln_loglayer=T
+ ln_bfr2d = .false. ! horizontal variation of the bottom friction coef (read a 2D mask file )
+ rn_bfrien = 50. ! local multiplying factor of bfr (ln_bfr2d=T)
+ rn_tfri1 = 4.e-4 ! top drag coefficient (linear case)
+ rn_tfri2 = 2.5e-3 ! top drag coefficient (non linear case). Minimum coeft if ln_loglayer=T
+ rn_tfri2_max= 1.e-1 ! max. top drag coefficient (non linear case and ln_loglayer=T)
+ rn_tfeb2 = 0.0 ! top turbulent kinetic energy background (m2/s2)
+ rn_tfrz0 = 3.e-3 ! top roughness [m] if ln_loglayer=T
+ ln_tfr2d = .false. ! horizontal variation of the top friction coef (read a 2D mask file )
+ rn_tfrien = 50. ! local multiplying factor of tfr (ln_tfr2d=T)
+
+ ln_bfrimp = .true. ! implicit bottom friction (requires ln_zdfexp = .false. if true)
+ ln_loglayer = .true. ! logarithmic formulation (non linear case)
/
!-----------------------------------------------------------------------
-&nambbc ! bottom temperature boundary condition
+&nambbc ! bottom temperature boundary condition (default: NO)
!-----------------------------------------------------------------------
+! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
+! ! ! (if <0 months) ! name ! (logical) ! (T/F ) ! 'monthly' ! filename ! pairing ! filename !
+ sn_qgh ='geothermal_heating.nc', -12. , 'heatflow', .false. , .true. , 'yearly' , '' , '' , ''
+ !
ln_trabbc = .false. ! Apply a geothermal heating at the ocean bottom
+ nn_geoflx = 2 ! geothermal heat flux: = 0 no flux
+ ! = 1 constant flux
+ ! = 2 variable flux (read in geothermal_heating.nc in mW/m2)
+ rn_geoflx_cst = 86.4e-3 ! Constant value of geothermal heat flux [W/m2]
+ cn_dir = './' ! root directory for the location of the runoff files
/
!-----------------------------------------------------------------------
-&nambbl ! bottom boundary layer scheme
+&nambbl ! bottom boundary layer scheme ("key_trabbl")
!-----------------------------------------------------------------------
- nn_bbl_ldf = 0 ! diffusive bbl (=1) or not (=0)
+ nn_bbl_ldf = 1 ! diffusive bbl (=1) or not (=0)
+ nn_bbl_adv = 0 ! advective bbl (=1/2) or not (=0)
+ rn_ahtbbl = 1000. ! lateral mixing coefficient in the bbl [m2/s]
+ rn_gambbl = 10. ! advective bbl coefficient [s]
/
+
+!!======================================================================
+!! Tracer (T & S ) namelists
+!!======================================================================
+!! nameos equation of state
+!! namtra_adv advection scheme
+!! namtra_adv_mle mixed layer eddy param. (Fox-Kemper param.)
+!! namtra_ldf lateral diffusion scheme
+!! namtra_ldfeiv eddy induced velocity param.
+!! namtra_dmp T & S newtonian damping
+!!======================================================================
+!
!-----------------------------------------------------------------------
&nameos ! ocean physical parameters
!-----------------------------------------------------------------------
- ln_teos10 = .true. ! = Use TEOS-10 equation of state
+ ln_teos10 = .false. ! = Use TEOS-10 equation of state
+ ln_eos80 = .true. ! = Use EOS80 equation of state
+ ln_seos = .false. ! = Use simplified equation of state (S-EOS)
+ !
+ ! ! S-EOS coefficients (ln_seos=T):
+ ! ! rd(T,S,Z)*rau0 = -a0*(1+.5*lambda*dT+mu*Z+nu*dS)*dT+b0*dS
+ rn_a0 = 1.6550e-1 ! thermal expension coefficient
+ rn_b0 = 7.6554e-1 ! saline expension coefficient
+ rn_lambda1 = 5.9520e-2 ! cabbeling coeff in T^2 (=0 for linear eos)
+ rn_lambda2 = 7.4914e-4 ! cabbeling coeff in S^2 (=0 for linear eos)
+ rn_mu1 = 1.4970e-4 ! thermobaric coeff. in T (=0 for linear eos)
+ rn_mu2 = 1.1090e-5 ! thermobaric coeff. in S (=0 for linear eos)
+ rn_nu = 2.4341e-3 ! cabbeling coeff in T*S (=0 for linear eos)
/
!-----------------------------------------------------------------------
-&namtra_adv ! advection scheme for tracer
+&namtra_adv ! advection scheme for tracer (default: NO advection)
+!-----------------------------------------------------------------------
+ ln_traadv_cen = .false. ! 2nd order centered scheme
+ nn_cen_h = 4 ! =2/4, horizontal 2nd order CEN / 4th order CEN
+ nn_cen_v = 4 ! =2/4, vertical 2nd order CEN / 4th order COMPACT
+ ln_traadv_fct = .true. ! FCT scheme
+ nn_fct_h = 2 ! =2/4, horizontal 2nd / 4th order
+ nn_fct_v = 2 ! =2/4, vertical 2nd / COMPACT 4th order
+ nn_fct_zts = 0 ! >=1, 2nd order FCT scheme with vertical sub-timestepping
+ ! ! (number of sub-timestep = nn_fct_zts)
+ ln_traadv_mus = .false. ! MUSCL scheme
+ ln_mus_ups = .false. ! use upstream scheme near river mouths
+ ln_traadv_ubs = .false. ! UBS scheme
+ nn_ubs_v = 2 ! =2 , vertical 2nd order FCT / COMPACT 4th order
+ ln_traadv_qck = .false. ! QUICKEST scheme
+/
!-----------------------------------------------------------------------
+&namtra_adv_mle ! mixed layer eddy parametrisation (Fox-Kemper param) (default: NO)
+!-----------------------------------------------------------------------
+ ln_mle = .false. ! (T) use the Mixed Layer Eddy (MLE) parameterisation
+ rn_ce = 0.06 ! magnitude of the MLE (typical value: 0.06 to 0.08)
+ nn_mle = 1 ! MLE type: =0 standard Fox-Kemper ; =1 new formulation
+ rn_lf = 5.e+3 ! typical scale of mixed layer front (meters) (case rn_mle=0)
+ rn_time = 172800. ! time scale for mixing momentum across the mixed layer (seconds) (case rn_mle=0)
+ rn_lat = 20. ! reference latitude (degrees) of MLE coef. (case rn_mle=1)
+ nn_mld_uv = 0 ! space interpolation of MLD at u- & v-pts (0=min,1=averaged,2=max)
+ nn_conv = 0 ! =1 no MLE in case of convection ; =0 always MLE
+ rn_rho_c_mle= 0.01 ! delta rho criterion used to calculate MLD for FK
/
!-----------------------------------------------------------------------
-&namtra_adv_mle ! mixed layer eddy parametrisation (Fox-Kemper param)
+&namtra_ldf ! lateral diffusion scheme for tracers (default: NO diffusion)
!-----------------------------------------------------------------------
-/
-!----------------------------------------------------------------------------------
-&namtra_ldf ! lateral diffusion scheme for tracers
-!----------------------------------------------------------------------------------
+ ! ! Operator type:
+ ! ! no diffusion: set ln_traldf_lap=..._blp=F
+ ln_traldf_lap = .true. ! laplacian operator
+ ln_traldf_blp = .false. ! bilaplacian operator
+ !
+ ! ! Direction of action:
+ ln_traldf_lev = .false. ! iso-level
+ ln_traldf_hor = .false. ! horizontal (geopotential)
+ ln_traldf_iso = .true. ! iso-neutral (standard operator)
+ ln_traldf_triad = .false. ! iso-neutral (triad operator)
+ !
+ ! ! iso-neutral options:
+ ln_traldf_msc = .false. ! Method of Stabilizing Correction (both operators)
+ rn_slpmax = 0.01 ! slope limit (both operators)
+ ln_triad_iso = .false. ! pure horizontal mixing in ML (triad only)
+ rn_sw_triad = 1 ! =1 switching triad ; =0 all 4 triads used (triad only)
+ ln_botmix_triad = .false. ! lateral mixing on bottom (triad only)
+ !
+ ! ! Coefficients:
+ nn_aht_ijk_t = 0 ! space/time variation of eddy coef
+ ! ! =-20 (=-30) read in eddy_diffusivity_2D.nc (..._3D.nc) file
+ ! ! = 0 constant
+ ! ! = 10 F(k) =ldf_c1d
+ ! ! = 20 F(i,j) =ldf_c2d
+ ! ! = 21 F(i,j,t) =Treguier et al. JPO 1997 formulation
+ ! ! = 30 F(i,j,k) =ldf_c2d * ldf_c1d
+ ! ! = 31 F(i,j,k,t)=F(local velocity and grid-spacing)
+ rn_aht_0 = 25. !125. ! lateral eddy diffusivity (lap. operator) [m2/s]
+ rn_bht_0 = 1.e+12 ! lateral eddy diffusivity (bilap. operator) [m4/s]
/
!-----------------------------------------------------------------------
&namtra_ldfeiv ! eddy induced velocity param. (default: NO)
!-----------------------------------------------------------------------
+ ln_ldfeiv =.false. ! use eddy induced velocity parameterization
+ ln_ldfeiv_dia =.false. ! diagnose eiv stream function and velocities
+ rn_aeiv_0 = 2000. ! eddy induced velocity coefficient [m2/s]
+ nn_aei_ijk_t = 21 ! space/time variation of the eiv coeficient
+ ! ! =-20 (=-30) read in eddy_induced_velocity_2D.nc (..._3D.nc) file
+ ! ! = 0 constant
+ ! ! = 10 F(k) =ldf_c1d
+ ! ! = 20 F(i,j) =ldf_c2d
+ ! ! = 21 F(i,j,t) =Treguier et al. JPO 1997 formulation
+ ! ! = 30 F(i,j,k) =ldf_c2d + ldf_c1d
/
!-----------------------------------------------------------------------
-&namtra_dmp ! tracer: T & S newtonian damping
+&namtra_dmp ! tracer: T & S newtonian damping (default: NO)
!-----------------------------------------------------------------------
+ ln_tradmp = .false. ! add a damping termn (T) or not (F)
+ nn_zdmp = 0 ! vertical shape =0 damping throughout the water column
+ ! =1 no damping in the mixing layer (kz criteria)
+ ! =2 no damping in the mixed layer (rho crieria)
+ cn_resto ='resto.nc' ! Name of file containing restoration coeff. field (use dmp_tools to create this)
/
+
+!!======================================================================
+!! *** Dynamics namelists ***
+!!======================================================================
+!! namdyn_adv formulation of the momentum advection
+!! namdyn_vor advection scheme
+!! namdyn_hpg hydrostatic pressure gradient
+!! namdyn_spg surface pressure gradient
+!! namdyn_ldf lateral diffusion scheme
+!!======================================================================
+!
!-----------------------------------------------------------------------
-&namdyn_adv ! formulation of the momentum advection
+&namdyn_adv ! formulation of the momentum advection (default: vector form)
!-----------------------------------------------------------------------
+ ln_dynadv_vec = .true. ! vector form (T) or flux form (F)
+ nn_dynkeg = 0 ! scheme for grad(KE): =0 C2 ; =1 Hollingsworth correction
+ ln_dynadv_cen2= .false. ! flux form - 2nd order centered scheme
+ ln_dynadv_ubs = .false. ! flux form - 3rd order UBS scheme
+ ln_dynzad_zts = .false. ! Use (T) sub timestepping for vertical momentum advection
/
!-----------------------------------------------------------------------
-&namdyn_vor ! option of physics/algorithm (not control by CPP keys)
+&nam_vvl ! vertical coordinate options (default: zstar)
+!-----------------------------------------------------------------------
+ ln_vvl_zstar = .true. ! zstar vertical coordinate
+ ln_vvl_ztilde = .false. ! ztilde vertical coordinate: only high frequency variations
+ ln_vvl_layer = .false. ! full layer vertical coordinate
+ ln_vvl_ztilde_as_zstar = .false. ! ztilde vertical coordinate emulating zstar
+ ln_vvl_zstar_at_eqtor = .false. ! ztilde near the equator
+ rn_ahe3 = 0.0e0 ! thickness diffusion coefficient
+ rn_rst_e3t = 30.e0 ! ztilde to zstar restoration timescale [days]
+ rn_lf_cutoff = 5.0e0 ! cutoff frequency for low-pass filter [days]
+ rn_zdef_max = 0.9e0 ! maximum fractional e3t deformation
+ ln_vvl_dbg = .true. ! debug prints (T/F)
+/
+!-----------------------------------------------------------------------
+&namdyn_vor ! Vorticity / Coriolis scheme (default: NO)
!-----------------------------------------------------------------------
- ln_dynvor_een = .true. ! energy & enstrophy scheme
+ ln_dynvor_ene = .false. ! enstrophy conserving scheme
+ ln_dynvor_ens = .false. ! energy conserving scheme
+ ln_dynvor_mix = .false. ! mixed scheme
+ ln_dynvor_een = .true. ! energy & enstrophy scheme
+ nn_een_e3f = 1 ! e3f = masked averaging of e3t divided by 4 (=0) or by the sum of mask (=1)
+ ln_dynvor_msk = .false. ! vorticity multiplied by fmask (=T) or not (=F) (all vorticity schemes) ! PLEASE DO NOT ACTIVATE
/
!-----------------------------------------------------------------------
-&namdyn_hpg ! Hydrostatic pressure gradient option
+&namdyn_hpg ! Hydrostatic pressure gradient option (default: zps)
!-----------------------------------------------------------------------
+ ln_hpg_zco = .false. ! z-coordinate - full steps
ln_hpg_zps = .false. ! z-coordinate - partial steps (interpolation)
- ln_hpg_sco = .true. ! s-coordinate (Standard Jacobian scheme)
+ ln_hpg_sco = .false. ! s-coordinate (standard jacobian formulation)
+ ln_hpg_isf = .false. ! s-coordinate (sco ) adapted to isf
+ ln_hpg_djc = .false. ! s-coordinate (Density Jacobian with Cubic polynomial)
+ ln_hpg_prj = .true. ! s-coordinate (Pressure Jacobian scheme)
/
!-----------------------------------------------------------------------
&namdyn_spg ! surface pressure gradient (default: NO)
!-----------------------------------------------------------------------
- ln_dynspg_exp = .false. ! explicit free surface
- ln_dynspg_ts = .true. ! split-explicit free surface
+ ln_dynspg_exp = .false. ! explicit free surface
+ ln_dynspg_ts = .true. ! split-explicit free surface
ln_bt_fw = .true. ! Forward integration of barotropic Eqs.
ln_bt_av = .true. ! Time filtering of barotropic variables
- nn_bt_flt = 1 ! Time filter choice = 0 None
+ nn_bt_flt = 1 ! Time filter choice = 0 None
! ! = 1 Boxcar over nn_baro sub-steps
- ! ! = 2 Boxcar over 2*nn_baro " "
+ ! ! = 2 Boxcar over 2*nn_baro " "
ln_bt_auto = .true. ! Number of sub-step defined from:
- rn_bt_cmax = 0.5 ! =T : the Maximum Courant Number allowed
- nn_baro = 30 ! =F : the number of sub-step in rn_rdt seconds
- ln_ulimit =.true.
+ rn_bt_cmax = 0.5 ! =T : the Maximum Courant Number allowed
+ nn_baro = 30 ! =F : the number of sub-step in rn_rdt seconds
+ ln_ulimit =.true.
cn_ulimit = 0.9
cnn_ulimit = 0.54
/
!-----------------------------------------------------------------------
-!&namdyn_spg ! surface pressure gradient (CPP key only)
-!-----------------------------------------------------------------------
-! ln_dynspg_ts = .true. ! split-explicit free surface
-! ln_bt_auto = .true. ! Set nn_baro automatically to be just below
-! ! a user defined maximum courant number (rn_bt_cmax)
-!/
-!-----------------------------------------------------------------------
-&namdyn_ldf ! lateral diffusion on momentum
+&namdyn_ldf ! lateral diffusion on momentum (default: NO)
!-----------------------------------------------------------------------
! ! Type of the operator :
- ln_dynldf_blp = .true. ! bilaplacian operator
- ln_dynldf_lap = .false. ! bilaplacian operator
+ ! ! no diffusion: set ln_dynldf_lap=..._blp=F
+ ln_dynldf_lap = .false. ! laplacian operator
+ ln_dynldf_blp = .true. ! bilaplacian operator
! ! Direction of action :
- ln_dynldf_lev = .true. ! iso-level
- ! Coefficient
- rn_ahm_0 = 60.0 ! horizontal laplacian eddy viscosity [m2/s]
- rn_bhm_0 = -1.0e+9 ! horizontal bilaplacian eddy viscosity [m4/s]
+ ln_dynldf_lev = .true. ! iso-level
+ ln_dynldf_hor = .false. ! horizontal (geopotential)
+ ln_dynldf_iso = .false. ! iso-neutral
+ ! ! Coefficient
+ nn_ahm_ijk_t = 0 ! space/time variation of eddy coef
+ ! ! =-30 read in eddy_viscosity_3D.nc file
+ ! ! =-20 read in eddy_viscosity_2D.nc file
+ ! ! = 0 constant
+ ! ! = 10 F(k)=c1d
+ ! ! = 20 F(i,j)=F(grid spacing)=c2d
+ ! ! = 30 F(i,j,k)=c2d*c1d
+ ! ! = 31 F(i,j,k)=F(grid spacing and local velocity)
+ ! ! = 32 F(i,j,k)=F(local gridscale and deformation rate)
+ ! Caution in 20 and 30 cases the coefficient have to be given for a 1 degree grid (~111km)
+ rn_ahm_0 = 50. ! horizontal laplacian eddy viscosity [m2/s]
+ rn_ahm_b = 0. ! background eddy viscosity for ldf_iso [m2/s]
+ rn_bhm_0 = -1.e+7 ! horizontal bilaplacian eddy viscosity [m4/s]
+ ! ! Smagorinsky settings (nn_ahm_ijk_t = 32) :
+ rn_csmc = 3.5 ! Smagorinsky constant of proportionality
+ rn_minfac = 1.0 ! multiplier of theorectical lower limit
+ rn_maxfac = 1.0 ! multiplier of theorectical upper limit
/
+
+!!======================================================================
+!! Tracers & Dynamics vertical physics namelists
+!!======================================================================
+!! namzdf vertical physics
+!! namzdf_ric richardson number dependent vertical mixing ("key_zdfric")
+!! namzdf_tke TKE dependent vertical mixing ("key_zdftke")
+!! namzdf_gls GLS vertical mixing ("key_zdfgls")
+!! namzdf_ddm double diffusive mixing parameterization ("key_zdfddm")
+!! namzdf_tmx tidal mixing parameterization ("key_zdftmx")
+!!======================================================================
+!
!-----------------------------------------------------------------------
&namzdf ! vertical physics
!-----------------------------------------------------------------------
- rn_avm0 = 0.1e-6 ! vertical eddy viscosity [m2/s] (background Kz if not "key_zdfcst")
- rn_avt0 = 0.1e-6 ! vertical eddy diffusivity [m2/s] (background Kz if not "key_zdfcst")
- ln_zdfevd = .false. ! enhanced vertical diffusion (evd) (T) or not (F)
- nn_evdm = 1 ! evd apply on tracer (=0) or on tracer and momentum (=1)
+ rn_avm0 = 1.2e-4 ! vertical eddy viscosity [m2/s] (background Kz if not "key_zdfcst")
+ rn_avt0 = 1.2e-5 ! vertical eddy diffusivity [m2/s] (background Kz if not "key_zdfcst")
+ nn_avb = 0 ! profile for background avt & avm (=1) or not (=0)
+ nn_havtb = 0 ! horizontal shape for avtb (=1) or not (=0)
+ ln_zdfevd = .true. ! enhanced vertical diffusion (evd) (T) or not (F)
+ nn_evdm = 0 ! evd apply on tracer (=0) or on tracer and momentum (=1)
+ rn_avevd = 100. ! evd mixing coefficient [m2/s]
+ ln_zdfnpc = .false. ! Non-Penetrative Convective algorithm (T) or not (F)
+ nn_npc = 1 ! frequency of application of npc
+ nn_npcp = 365 ! npc control print frequency
+ ln_zdfexp = .false. ! time-stepping: split-explicit (T) or implicit (F) time stepping
+ nn_zdfexp = 3 ! number of sub-timestep for ln_zdfexp=T
+ ln_zdfqiao = .false. ! Enhanced wave vertical mixing Qiao (2010) (T => ln_wave=.true. & ln_sdw=.true. & fill namsbc_wave)
/
!-----------------------------------------------------------------------
&namzdf_ric ! richardson number dependent vertical diffusion ("key_zdfric" )
!-----------------------------------------------------------------------
+ rn_avmri = 100.e-4 ! maximum value of the vertical viscosity
+ rn_alp = 5. ! coefficient of the parameterization
+ nn_ric = 2 ! coefficient of the parameterization
+ rn_ekmfc = 0.7 ! Factor in the Ekman depth Equation
+ rn_mldmin = 1.0 ! minimum allowable mixed-layer depth estimate (m)
+ rn_mldmax = 1000.0 ! maximum allowable mixed-layer depth estimate (m)
+ rn_wtmix = 10.0 ! vertical eddy viscosity coeff [m2/s] in the mixed-layer
+ rn_wvmix = 10.0 ! vertical eddy diffusion coeff [m2/s] in the mixed-layer
+ ln_mldw = .true. ! Flag to use or not the mixed layer depth param.
/
!-----------------------------------------------------------------------
&namzdf_tke ! turbulent eddy kinetic dependent vertical diffusion ("key_zdftke")
!-----------------------------------------------------------------------
+ rn_ediff = 0.1 ! coef. for vertical eddy coef. (avt=rn_ediff*mxl*sqrt(e) )
+ rn_ediss = 0.7 ! coef. of the Kolmogoroff dissipation
+ rn_ebb = 67.83 ! coef. of the surface input of tke (=67.83 suggested when ln_mxl0=T)
+ rn_emin = 1.e-6 ! minimum value of tke [m2/s2]
+ rn_emin0 = 1.e-4 ! surface minimum value of tke [m2/s2]
+ rn_bshear = 1.e-20 ! background shear (>0) currently a numerical threshold (do not change it)
+ nn_mxl = 2 ! mixing length: = 0 bounded by the distance to surface and bottom
+ ! = 1 bounded by the local vertical scale factor
+ ! = 2 first vertical derivative of mixing length bounded by 1
+ ! = 3 as =2 with distinct disspipative an mixing length scale
+ nn_pdl = 1 ! Prandtl number function of richarson number (=1, avt=pdl(Ri)*avm) or not (=0, avt=avm)
+ ln_mxl0 = .true. ! surface mixing length scale = F(wind stress) (T) or not (F)
+ rn_mxl0 = 0.04 ! surface buoyancy lenght scale minimum value
+ ln_lc = .true. ! Langmuir cell parameterisation (Axell 2002)
+ rn_lc = 0.15 ! coef. associated to Langmuir cells
+ nn_etau = 1 ! penetration of tke below the mixed layer (ML) due to near intertial waves
+ ! = 0 no penetration
+ ! = 1 add a tke source below the ML
+ ! = 2 add a tke source just at the base of the ML
+ ! = 3 as = 1 applied on HF part of the stress (ln_cpl=T)
+ rn_efr = 0.05 ! fraction of surface tke value which penetrates below the ML (nn_etau=1 or 2)
+ nn_htau = 1 ! type of exponential decrease of tke penetration below the ML
+ ! = 0 constant 10 m length scale
+ ! = 1 0.5m at the equator to 30m poleward of 40 degrees
/
-!------------------------------------------------------------------------
-&namzdf_kpp ! K-Profile Parameterization dependent vertical mixing ("key_zdfkpp", and optionally:
-!------------------------------------------------------------------------ "key_kppcustom" or "key_kpplktb")
-/
-!-----------------------------------------------------------------------
-&namzdf_gls ! GLS vertical diffusion ("key_zdfgls")
!-----------------------------------------------------------------------
+&namzdf_gls ! GLS vertical diffusion ("key_zdfgls")
+!-----------------------------------------------------------------------
+ rn_emin = 1.e-7 ! minimum value of e [m2/s2]
+ rn_epsmin = 1.e-12 ! minimum value of eps [m2/s3]
+ ln_length_lim = .true. ! limit on the dissipation rate under stable stratification (Galperin et al., 1988)
+ rn_clim_galp = 0.267 ! galperin limit
+ ln_sigpsi = .true. ! Activate or not Burchard 2001 mods on psi schmidt number in the wb case
+ rn_crban = 100. ! Craig and Banner 1994 constant for wb tke flux
+ rn_charn = 70000. ! Charnock constant for wb induced roughness length
+ rn_hsro = 0.02 ! Minimum surface roughness
+ rn_frac_hs = 1.3 ! Fraction of wave height as roughness (if nn_z0_met=2)
+ nn_z0_met = 2 ! Method for surface roughness computation (0/1/2)
+ nn_bc_surf = 1 ! surface condition (0/1=Dir/Neum)
+ nn_bc_bot = 1 ! bottom condition (0/1=Dir/Neum)
+ nn_stab_func = 2 ! stability function (0=Galp, 1= KC94, 2=CanutoA, 3=CanutoB)
+ nn_clos = 1 ! predefined closure type (0=MY82, 1=k-eps, 2=k-w, 3=Gen)
/
!-----------------------------------------------------------------------
&namzdf_ddm ! double diffusive mixing parameterization ("key_zdfddm")
!-----------------------------------------------------------------------
+ rn_avts = 1.e-4 ! maximum avs (vertical mixing on salinity)
+ rn_hsbfr = 1.6 ! heat/salt buoyancy flux ratio
/
!-----------------------------------------------------------------------
&namzdf_tmx ! tidal mixing parameterization ("key_zdftmx")
!-----------------------------------------------------------------------
+ rn_htmx = 500. ! vertical decay scale for turbulence (meters)
+ rn_n2min = 1.e-8 ! threshold of the Brunt-Vaisala frequency (s-1)
+ rn_tfe = 0.333 ! tidal dissipation efficiency
+ rn_me = 0.2 ! mixing efficiency
+ ln_tmx_itf = .true. ! ITF specific parameterisation
+ rn_tfe_itf = 1. ! ITF tidal dissipation efficiency
/
!-----------------------------------------------------------------------
-&namsol ! elliptic solver / island / free surface
+&namzdf_tmx_new ! internal wave-driven mixing parameterization ("key_zdftmx_new" & "key_zdfddm")
!-----------------------------------------------------------------------
+ nn_zpyc = 1 ! pycnocline-intensified dissipation scales as N (=1) or N^2 (=2)
+ ln_mevar = .true. ! variable (T) or constant (F) mixing efficiency
+ ln_tsdiff = .true. ! account for differential T/S mixing (T) or not (F)
/
+!!======================================================================
+!! *** Miscellaneous namelists ***
+!!======================================================================
+!! nammpp Massively Parallel Processing ("key_mpp_mpi)
+!! namctl Control prints
+!! namsto Stochastic parametrization of EOS
+!!======================================================================
+!
!-----------------------------------------------------------------------
&nammpp ! Massively Parallel Processing ("key_mpp_mpi)
!-----------------------------------------------------------------------
+ cn_mpi_send = 'I' ! mpi send/recieve type ='S', 'B', or 'I' for standard send,
+ ! buffer blocking send or immediate non-blocking sends, resp.
+ nn_buffer = 0 ! size in bytes of exported buffer ('B' case), 0 no exportation
+ ln_nnogather= .false. ! activate code to avoid mpi_allgather use at the northfold
+ jpni = -20 ! jpni number of processors following i (set automatically if < 1)
+ jpnj = -40 ! jpnj number of processors following j (set automatically if < 1)
+ jpnij = -550 ! jpnij number of local domains (set automatically if < 1)
/
!-----------------------------------------------------------------------
-&namctl ! Control prints & Benchmark
-!-----------------------------------------------------------------------
+&namctl ! Control prints
+!-----------------------------------------------------------------------
+ ln_ctl = .false. ! trends control print (expensive!)
+ nn_print = 0 ! level of print (0 no extra print)
+ nn_ictls = 0 ! start i indice of control sum (use to compare mono versus
+ nn_ictle = 0 ! end i indice of control sum multi processor runs
+ nn_jctls = 0 ! start j indice of control over a subdomain)
+ nn_jctle = 0 ! end j indice of control
+ nn_isplt = 1 ! number of processors in i-direction
+ nn_jsplt = 1 ! number of processors in j-direction
+ nn_timing = 1 ! timing by routine activated (=1) creates timing.output file, or not (=0)
+ nn_diacfl = 0 ! Write out CFL diagnostics (=1) in cfl_diagnostics.ascii, or not (=0)
/
!-----------------------------------------------------------------------
-&namnc4 ! netcdf4 chunking and compression settings ("key_netcdf4")
-!-----------------------------------------------------------------------
+&namsto ! Stochastic parametrization of EOS (default: NO)
+!-----------------------------------------------------------------------
+ ln_sto_eos = .false. ! stochastic equation of state
+ nn_sto_eos = 1 ! number of independent random walks
+ rn_eos_stdxy= 1.4 ! random walk horz. standard deviation (in grid points)
+ rn_eos_stdz = 0.7 ! random walk vert. standard deviation (in grid points)
+ rn_eos_tcor = 1440. ! random walk time correlation (in timesteps)
+ nn_eos_ord = 1 ! order of autoregressive processes
+ nn_eos_flt = 0 ! passes of Laplacian filter
+ rn_eos_lim = 2.0 ! limitation factor (default = 3.0)
+ ln_rststo = .false. ! start from mean parameter (F) or from restart file (T)
+ ln_rstseed = .true. ! read seed of RNG from restart file
+ cn_storst_in = "restart_sto" ! suffix of stochastic parameter restart file (input)
+ cn_storst_out = "restart_sto" ! suffix of stochastic parameter restart file (output)
/
+
+!!======================================================================
+!! *** Diagnostics namelists ***
+!!======================================================================
+!! namtrd dynamics and/or tracer trends (default F)
+!! namptr Poleward Transport Diagnostics (default F)
+!! namhsb Heat and salt budgets (default F)
+!! namdiu Cool skin and warm layer models (default F)
+!! namdiu Cool skin and warm layer models (default F)
+!! namflo float parameters ("key_float")
+!! nam_diaharm Harmonic analysis of tidal constituents ("key_diaharm")
+!! namdct transports through some sections ("key_diadct")
+!! nam_diatmb Top Middle Bottom Output (default F)
+!! nam_dia25h 25h Mean Output (default F)
+!! namnc4 netcdf4 chunking and compression settings ("key_netcdf4")
+!!======================================================================
+!
!-----------------------------------------------------------------------
-&namtrd ! diagnostics on dynamics and/or tracer trends ("key_trddyn" and/or "key_trdtra")
-! ! or mixed-layer trends or barotropic vorticity ("key_trdmld" or "key_trdvor")
-!-----------------------------------------------------------------------
+&namtrd ! trend diagnostics (default F)
+!-----------------------------------------------------------------------
+ ln_glo_trd = .false. ! (T) global domain averaged diag for T, T^2, KE, and PE
+ ln_dyn_trd = .false. ! (T) 3D momentum trend output
+ ln_dyn_mxl = .false. ! (T) 2D momentum trends averaged over the mixed layer (not coded yet)
+ ln_vor_trd = .false. ! (T) 2D barotropic vorticity trends (not coded yet)
+ ln_KE_trd = .false. ! (T) 3D Kinetic Energy trends
+ ln_PE_trd = .false. ! (T) 3D Potential Energy trends
+ ln_tra_trd = .false. ! (T) 3D tracer trend output
+ ln_tra_mxl = .false. ! (T) 2D tracer trends averaged over the mixed layer (not coded yet)
+ nn_trd = 365 ! print frequency (ln_glo_trd=T) (unit=time step)
/
-!-----------------------------------------------------------------------
-&namflo ! float parameters ("key_float")
-!-----------------------------------------------------------------------
+!!gm nn_ctls = 0 ! control surface type in mixed-layer trends (0,1 or n<jpk)
+!!gm rn_ucf = 1. ! unit conversion factor (=1 -> /seconds ; =86400. -> /day)
+!!gm cn_trdrst_in = "restart_mld" ! suffix of ocean restart name (input)
+!!gm cn_trdrst_out = "restart_mld" ! suffix of ocean restart name (output)
+!!gm ln_trdmld_restart = .false. ! restart for ML diagnostics
+!!gm ln_trdmld_instant = .false. ! flag to diagnose trends of instantantaneous or mean ML T/S
+!!gm
+!-----------------------------------------------------------------------
+&namptr ! Poleward Transport Diagnostic (default F)
+!-----------------------------------------------------------------------
+ ln_diaptr = .false. ! Poleward heat and salt transport (T) or not (F)
+ ln_subbas = .false. ! Atlantic/Pacific/Indian basins computation (T) or not
/
!-----------------------------------------------------------------------
-&namptr ! Poleward Transport Diagnostic
+&namhsb ! Heat and salt budgets (default F)
!-----------------------------------------------------------------------
+ ln_diahsb = .false. ! check the heat and salt budgets (T) or not (F)
/
!-----------------------------------------------------------------------
-&namhsb ! Heat and salt budgets
+&namdiu ! Cool skin and warm layer models (default F)
!-----------------------------------------------------------------------
+ ln_diurnal = .false. !
+ ln_diurnal_only = .false. !
/
!-----------------------------------------------------------------------
-&namdiu ! Cool skin and warm layer models (default F)
-!-----------------------------------------------------------------------
+&namflo ! float parameters ("key_float")
+!-----------------------------------------------------------------------
+ jpnfl = 1 ! total number of floats during the run
+ jpnnewflo = 0 ! number of floats for the restart
+ ln_rstflo = .false. ! float restart (T) or not (F)
+ nn_writefl = 75 ! frequency of writing in float output file
+ nn_stockfl = 5475 ! frequency of creation of the float restart file
+ ln_argo = .false. ! Argo type floats (stay at the surface each 10 days)
+ ln_flork4 = .false. ! trajectories computed with a 4th order Runge-Kutta (T)
+ ! ! or computed with Blanke' scheme (F)
+ ln_ariane = .true. ! Input with Ariane tool convention(T)
+ ln_flo_ascii= .true. ! Output with Ariane tool netcdf convention(F) or ascii file (T)
/
!-----------------------------------------------------------------------
-&nam_diaharm ! Harmonic analysis of tidal constituents ('key_diaharm')
+&nam_diaharm ! Harmonic analysis of tidal constituents ("key_diaharm")
!-----------------------------------------------------------------------
- nit000_han = 1 !43201 ! First time step used for harmonic analysis
- nitend_han = 43680 !86400 ! Last time step used for harmonic analysis
- nstep_han = 5 ! Time step frequency for harmonic analysis
+ nit000_han = 14401 ! First time step used for harmonic analysis
+ nitend_han = 10800! 7200 ! Last time step used for harmonic analysis
+ nstep_han = 5 ! Time step frequency for harmonic analysis
tname(1) = 'M2' ! Name of tidal constituents
- tname(2) = 'K2'
- tname(3) = 'S2'
+ tname(2) = 'S2' ! Name of tidal constituents
+ tname(3) = 'K1' ! Name of tidal constituents
+ tname(4) = 'O1' ! Name of tidal constituents
/
!-----------------------------------------------------------------------
-&namdct ! transports through sections
+&namdct ! transports through some sections ("key_diadct")
!-----------------------------------------------------------------------
+ nn_dct = 15 ! time step frequency for transports computing
+ nn_dctwri = 15 ! time step frequency for transports writing
+ nn_secdebug= 112 ! 0 : no section to debug
+ ! ! -1 : debug all section
+ ! ! 0 < n : debug section number n
/
!-----------------------------------------------------------------------
&nam_diatmb ! Top Middle Bottom Output (default F)
!-----------------------------------------------------------------------
+ ln_diatmb = .false. ! Choose Top Middle and Bottom output or not
/
!-----------------------------------------------------------------------
-&nam_dia25h ! 25h Mean Output (default F)
-!-----------------------------------------------------------------------
-/
!-----------------------------------------------------------------------
-&namobs ! observation usage switch ('key_diaobs')
+&namnc4 ! netcdf4 chunking and compression settings ("key_netcdf4")
!-----------------------------------------------------------------------
+ ln_diatmb = .false. ! Choose Top Middle and Bottom output or not
/
!-----------------------------------------------------------------------
-&nam_asminc ! assimilation increments ('key_asminc')
+&nam_dia25h ! 25h Mean Output (default F)
!-----------------------------------------------------------------------
+ ln_dia25h = .true. ! Choose 25h mean output or not
/
!-----------------------------------------------------------------------
-&namsbc_wave ! External fields from wave model
+&namnc4 ! netcdf4 chunking and compression settings ("key_netcdf4")
!-----------------------------------------------------------------------
+ nn_nchunks_i= 4 ! number of chunks in i-dimension
+ nn_nchunks_j= 4 ! number of chunks in j-dimension
+ nn_nchunks_k= 31 ! number of chunks in k-dimension
+ ! ! setting nn_nchunks_k = jpk will give a chunk size of 1 in the vertical which
+ ! ! is optimal for postprocessing which works exclusively with horizontal slabs
+ ln_nc4zip = .true. ! (T) use netcdf4 chunking and compression
+ ! ! (F) ignore chunking information and produce netcdf3-compatible files
/
+
+!!======================================================================
+!! *** Observation & Assimilation ***
+!!======================================================================
+!! namobs observation and model comparison
+!! nam_asminc assimilation increments ('key_asminc')
+!!======================================================================
+!
!-----------------------------------------------------------------------
-&namdyn_nept ! Neptune effect (simplified: lateral and vertical diffusions removed)
-!-----------------------------------------------------------------------
+&namobs ! observation usage switch
+!-----------------------------------------------------------------------
+ ln_diaobs = .false. ! Logical switch for the observation operator
+ ln_t3d = .false. ! Logical switch for T profile observations
+ ln_s3d = .false. ! Logical switch for S profile observations
+ ln_sla = .false. ! Logical switch for SLA observations
+ ln_sst = .false. ! Logical switch for SST observations
+ ln_sic = .false. ! Logical switch for Sea Ice observations
+ ln_vel3d = .false. ! Logical switch for velocity observations
+ ln_altbias = .false. ! Logical switch for altimeter bias correction
+ ln_nea = .false. ! Logical switch for rejection of observations near land
+ ln_grid_global = .true. ! Logical switch for global distribution of observations
+ ln_grid_search_lookup = .false. ! Logical switch for obs grid search w/lookup table
+ ln_ignmis = .true. ! Logical switch for ignoring missing files
+ ln_s_at_t = .false. ! Logical switch for computing model S at T obs if not there
+ ln_sstnight = .false. ! Logical switch for calculating night-time average for SST obs
+! All of the *files* variables below are arrays. Use namelist_cfg to add more files
+ cn_profbfiles = 'profiles_01.nc' ! Profile feedback input observation file names
+ cn_slafbfiles = 'sla_01.nc' ! SLA feedback input observation file names
+ cn_sstfbfiles = 'sst_01.nc' ! SST feedback input observation file names
+ cn_sicfbfiles = 'sic_01.nc' ! SIC feedback input observation file names
+ cn_velfbfiles = 'vel_01.nc' ! Velocity feedback input observation file names
+ cn_altbiasfile = 'altbias.nc' ! Altimeter bias input file name
+ cn_gridsearchfile='gridsearch.nc' ! Grid search file name
+ rn_gridsearchres = 0.5 ! Grid search resolution
+ rn_dobsini = 00010101.000000 ! Initial date in window YYYYMMDD.HHMMSS
+ rn_dobsend = 00010102.000000 ! Final date in window YYYYMMDD.HHMMSS
+ nn_1dint = 0 ! Type of vertical interpolation method
+ nn_2dint = 0 ! Type of horizontal interpolation method
+ nn_msshc = 0 ! MSSH correction scheme
+ rn_mdtcorr = 1.61 ! MDT correction
+ rn_mdtcutoff = 65.0 ! MDT cutoff for computed correction
+ nn_profdavtypes = -1 ! Profile daily average types - array
+ ln_sstbias = .false. !
+ cn_sstbias_files = 'sstbias.nc' !
/
!-----------------------------------------------------------------------
-&namwad ! Wetting and Drying namelist
-!-----------------------------------------------------------------------
- ln_wd = .false. !: key to turn on/off wetting/drying (T: on, F: off)
- rn_wdmin1=0.1 !: minimum water depth on dried cells
- rn_wdmin2 = 0.01 !: tolerrance of minimum water depth on dried cells
- rn_wdld = 20.0 !: land elevation below which wetting/drying will be considered
- nn_wdit = 10 !: maximum number of iteration for W/D limiter
+&nam_asminc ! assimilation increments ('key_asminc')
+!-----------------------------------------------------------------------
+ ln_bkgwri = .false. ! Logical switch for writing out background state
+ ln_trainc = .false. ! Logical switch for applying tracer increments
+ ln_dyninc = .false. ! Logical switch for applying velocity increments
+ ln_sshinc = .false. ! Logical switch for applying SSH increments
+ ln_asmdin = .false. ! Logical switch for Direct Initialization (DI)
+ ln_asmiau = .false. ! Logical switch for Incremental Analysis Updating (IAU)
+ nitbkg = 0 ! Timestep of background in [0,nitend-nit000-1]
+ nitdin = 0 ! Timestep of background for DI in [0,nitend-nit000-1]
+ nitiaustr = 1 ! Timestep of start of IAU interval in [0,nitend-nit000-1]
+ nitiaufin = 15 ! Timestep of end of IAU interval in [0,nitend-nit000-1]
+ niaufn = 0 ! Type of IAU weighting function
+ ln_salfix = .false. ! Logical switch for ensuring that the sa > salfixmin
+ salfixmin = -9999 ! Minimum salinity after applying the increments
+ nn_divdmp = 0 ! Number of iterations of divergence damping operator
/
diff --git a/EXP_Apr19/namelist_ref b/EXP_Apr19/namelist_ref
index d301714..377fecd 100755
--- a/EXP_Apr19/namelist_ref
+++ b/EXP_Apr19/namelist_ref
@@ -99,10 +99,8 @@
!-----------------------------------------------------------------------
! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
- sn_tem = './ICS/initcd_votemper.nc', -1 ,'votemper', .false. , .true. , 'yearly' , '' , '' , ''
- sn_sal = './ICS/initcd_vosaline.nc', -1 ,'vosaline', .false. , .true. , 'yearly' , '' , '' , ''
-
-
+ sn_tem = 'data_1m_potential_temperature_nomask', -1 ,'votemper', .true. , .true. , 'yearly' , '' , '' , ''
+ sn_sal = 'data_1m_salinity_nomask' , -1 ,'vosaline', .true. , .true. , 'yearly' , '' , '' , ''
!
cn_dir = './' ! root directory for the location of the runoff files
ln_tsd_init = .true. ! Initialisation of ocean T & S with T & S input data (T) or not (F)
@@ -205,7 +203,7 @@
! =1 levitating ice with mass and salt exchange but no presure effect
! =2 embedded sea-ice (full salt and mass exchanges and pressure)
! Misc. options of sbc :
- ln_traqsr = .false. ! Light penetration in the ocean (T => fill namtra_qsr)
+ ln_traqsr = .true. ! Light penetration in the ocean (T => fill namtra_qsr)
ln_dm2dc = .false. ! daily mean to diurnal cycle on short wave
ln_rnf = .true. ! runoffs (T => fill namsbc_rnf)
ln_ssr = .true. ! Sea Surface Restoring on T and/or S (T => fill namsbc_ssr)
@@ -219,7 +217,7 @@
ln_sdw = .false. ! Read 2D Surf Stokes Drift & Computation of 3D stokes drift (T => ln_wave=.true. & fill namsbc_wave)
ln_tauoc = .false. ! Activate ocean stress modified by external wave induced stress (T => ln_wave=.true. & fill namsbc_wave)
ln_stcor = .false. ! Activate Stokes Coriolis term (T => ln_wave=.true. & ln_sdw=.true. & fill namsbc_wave)
- nn_lsm = 1 ! =0 land/sea mask for input fields is not applied (keep empty land/sea mask filename field) ,
+ nn_lsm = 0 ! =0 land/sea mask for input fields is not applied (keep empty land/sea mask filename field) ,
! =1:n number of iterations of land/sea mask application for input fields (fill land/sea mask filename field)
/
!-----------------------------------------------------------------------
@@ -233,36 +231,36 @@
sn_qsr = 'qsr' , 24 , 'qsr' , .false. , .false., 'yearly' , '' , '' , ''
sn_emp = 'emp' , 24 , 'emp' , .false. , .false., 'yearly' , '' , '' , ''
- cn_dir = './fluxes/' ! root directory for the location of the flux files
+ cn_dir = './' ! root directory for the location of the flux files
/
!-----------------------------------------------------------------------
&namsbc_blk ! namsbc_blk generic Bulk formula (ln_blk = T)
!-----------------------------------------------------------------------
! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
- sn_humi= 'ERA5_SPH', 1, 'SPH', .true., .false., 'yearly', 'weights_era5_INDIAN_bicubic.nc', '', 'ERA5_LSM'
- sn_prec= 'ERA5_TP', 1, 'TP', .true., .false., 'yearly', 'weights_era5_INDIAN_bicubic.nc', '', 'ERA5_LSM'
- sn_qlw = 'ERA5_STRD', 1, 'STRD', .true., .false., 'yearly', 'weights_era5_INDIAN_bicubic.nc', '', 'ERA5_LSM'
- sn_qsr= 'ERA5_SSRD', 1, 'SSRD', .true., .false., 'yearly', 'weights_era5_INDIAN_bicubic.nc', '', 'ERA5_LSM'
- sn_snow= 'ERA5_SF', 1, 'SF', .true., .false., 'yearly', 'weights_era5_INDIAN_bicubic.nc', '', 'ERA5_LSM'
- sn_tair= 'ERA5_T2M', 1, 'T2M', .true., .false., 'yearly', 'weights_era5_INDIAN_bicubic.nc', '', 'ERA5_LSM'
- sn_wndi= 'ERA5_U10', 1, 'U10', .true., .false., 'yearly', 'weights_era5_INDIAN_bicubic.nc', 'Uwnd', 'ERA5_LSM'
- sn_wndj= 'ERA5_V10', 1, 'V10', .true., .false., 'yearly', 'weights_era5_INDIAN_bicubic.nc', 'Vwnd', 'ERA5_LSM'
- sn_slp= 'SPH_ERA5_SP', 1, 'SP', .true., .false., 'yearly', 'weights_era5_INDIAN_bicubic.nc', '', 'ERA5_LSM'
-! sn_tdif= 'SPH_ERA5_D2M', 1, 'D2M', .true., .false., 'yearly', 'weights_era5_INDIAN_bicubic.nc', '', 'ERA5_LSM'
+ sn_wndi = 'u_10.15JUNE2009_fill' , 6 , 'U_10_MOD', .false. , .true. , 'yearly' , 'weights_core_orca2_bicubic_noc.nc' , 'Uwnd' , ''
+ sn_wndj = 'v_10.15JUNE2009_fill' , 6 , 'V_10_MOD', .false. , .true. , 'yearly' , 'weights_core_orca2_bicubic_noc.nc' , 'Vwnd' , ''
+ sn_qsr = 'ncar_rad.15JUNE2009_fill' , 24 , 'SWDN_MOD', .false. , .true. , 'yearly' , 'weights_core_orca2_bilinear_noc.nc' , '' , ''
+ sn_qlw = 'ncar_rad.15JUNE2009_fill' , 24 , 'LWDN_MOD', .false. , .true. , 'yearly' , 'weights_core_orca2_bilinear_noc.nc' , '' , ''
+ sn_tair = 't_10.15JUNE2009_fill' , 6 , 'T_10_MOD', .false. , .true. , 'yearly' , 'weights_core_orca2_bilinear_noc.nc' , '' , ''
+ sn_humi = 'q_10.15JUNE2009_fill' , 6 , 'Q_10_MOD', .false. , .true. , 'yearly' , 'weights_core_orca2_bilinear_noc.nc' , '' , ''
+ sn_prec = 'ncar_precip.15JUNE2009_fill', -1 , 'PRC_MOD1', .false. , .true. , 'yearly' , 'weights_core_orca2_bilinear_noc.nc' , '' , ''
+ sn_snow = 'ncar_precip.15JUNE2009_fill', -1 , 'SNOW' , .false. , .true. , 'yearly' , 'weights_core_orca2_bilinear_noc.nc' , '' , ''
+ sn_slp = 'slp.15JUNE2009_fill' , 6 , 'SLP' , .false. , .true. , 'yearly' , 'weights_core_orca2_bilinear_noc.nc' , '' , ''
+ sn_tdif = 'taudif_core' , 24 , 'taudif' , .false. , .true. , 'yearly' , 'weights_core_orca2_bilinear_noc.nc' , '' , ''
! ! bulk algorithm :
- ln_NCAR = .true. ! "NCAR" algorithm (Large and Yeager 2008)
+ ln_NCAR = .false. ! "NCAR" algorithm (Large and Yeager 2008)
ln_COARE_3p0= .false. ! "COARE 3.0" algorithm (Fairall et al. 2003)
ln_COARE_3p5= .false. ! "COARE 3.5" algorithm (Edson et al. 2013)
ln_ECMWF = .false. ! "ECMWF" algorithm (IFS cycle 31)
!
- cn_dir = './fluxes/' ! root directory for the location of the bulk files
+ cn_dir = './' ! root directory for the location of the bulk files
ln_taudif = .false. ! HF tau contribution: use "mean of stress module - module of the mean stress" data
- rn_zqt = 2. ! Air temperature and humidity reference height (m)
+ rn_zqt = 10. ! Air temperature and humidity reference height (m)
rn_zu = 10. ! Wind vector reference height (m)
- rn_pfac = 1. ! multiplicative factor for precipitation (total & snow)
+ rn_pfac = 1. ! multiplicative factor for precipitation (total & snow)
rn_efac = 1. ! multiplicative factor for evaporation (0. or 1.)
- rn_vfac = 1. ! multiplicative factor for ocean/ice velocity
+ rn_vfac = 0. ! multiplicative factor for ocean/ice velocity
! in the calculation of the wind stress (0.=absolute winds or 1.=relative winds)
ln_Cd_L12 = .false. ! Modify the drag ice-atm and oce-atm depending on ice concentration
! This parameterization is from Lupkes et al. (JGR 2012)
@@ -340,21 +338,21 @@
rn_abs = 0.58 ! RGB & 2 bands: fraction of light (rn_si1)
rn_si0 = 0.35 ! RGB & 2 bands: shortess depth of extinction
rn_si1 = 23.0 ! 2 bands: longest depth of extinction
- ln_qsr_ice = .false. ! light penetration for ice-model LIM3
+ ln_qsr_ice = .true. ! light penetration for ice-model LIM3
/
!-----------------------------------------------------------------------
&namsbc_rnf ! runoffs namelist surface boundary condition (ln_rnf=T)
!-----------------------------------------------------------------------
! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
- sn_rnf = 'river_test' , -1 , 'rorunoff', .true. , .true. , 'yearly' , '' , '' , ''
- sn_cnf = 'river_test' , 0 , 'socoefr0', .false. , .true. , 'yearly' , '' , '' , ''
+ sn_rnf = 'runoff_core_monthly', -1 , 'sorunoff', .true. , .true. , 'yearly' , '' , '' , ''
+ sn_cnf = 'runoff_core_monthly', 0 , 'socoefr0', .false. , .true. , 'yearly' , '' , '' , ''
sn_s_rnf = 'runoffs' , 24 , 'rosaline', .true. , .true. , 'yearly' , '' , '' , ''
sn_t_rnf = 'runoffs' , 24 , 'rotemper', .true. , .true. , 'yearly' , '' , '' , ''
sn_dep_rnf = 'runoffs' , 0 , 'rodepth' , .false. , .true. , 'yearly' , '' , '' , ''
cn_dir = './' ! root directory for the location of the runoff files
- ln_rnf_mouth= .false. ! specific treatment at rivers mouths
+ ln_rnf_mouth= .true. ! specific treatment at rivers mouths
rn_hrnf = 15.e0 ! depth over which enhanced vertical mixing is used (ln_rnf_mouth=T)
rn_avt_rnf = 1.e-3 ! value of the additional vertical mixing coef. [m2/s] (ln_rnf_mouth=T)
rn_rfact = 1.e0 ! multiplicative factor for runoff
@@ -574,13 +572,13 @@
!-----------------------------------------------------------------------
! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
! ! ! (if <0 months) ! name ! (logical) ! (T/F ) ! 'monthly' ! filename ! pairing ! filename !
- bn_ssh = 'INDIAN_bdyT_u2d', 1 , 'sossheig', .true. , .false. , 'monthly' , '' , '' , ''
- bn_u2d = 'INDIAN_bdyU_u2d', 1 , 'vobtcrtx', .true. , .false. , 'monthly' , '' , '' , ''
- bn_v2d = 'INDIAN_bdyV_u2d', 1 , 'vobtcrty', .true. , .false. , 'monthly' , '' , '' , ''
- bn_u3d = 'INDIAN_bdyU_u3d', 1 , 'vozocrtx', .true. , .false. , 'monthly' , '' , '' , ''
- bn_v3d = 'INDIAN_bdyV_u3d', 1 , 'vomecrty', .true. , .false. , 'monthly' , '' , '' , ''
- bn_tem = 'INDIAN_bdyT_tra', 1 , 'votemper', .true. , .false. , 'monthly' , '' , '' , ''
- bn_sal = 'INDIAN_bdyT_tra', 1 , 'vosaline', .true. , .false. , 'monthly' , '' , '' , ''
+ bn_ssh = 'amm12_bdyT_u2d', 24 , 'sossheig', .true. , .false. , 'daily' , '' , '' , ''
+ bn_u2d = 'amm12_bdyU_u2d', 24 , 'vobtcrtx', .true. , .false. , 'daily' , '' , '' , ''
+ bn_v2d = 'amm12_bdyV_u2d', 24 , 'vobtcrty', .true. , .false. , 'daily' , '' , '' , ''
+ bn_u3d = 'amm12_bdyU_u3d', 24 , 'vozocrtx', .true. , .false. , 'daily' , '' , '' , ''
+ bn_v3d = 'amm12_bdyV_u3d', 24 , 'vomecrty', .true. , .false. , 'daily' , '' , '' , ''
+ bn_tem = 'amm12_bdyT_tra', 24 , 'votemper', .true. , .false. , 'daily' , '' , '' , ''
+ bn_sal = 'amm12_bdyT_tra', 24 , 'vosaline', .true. , .false. , 'daily' , '' , '' , ''
! for lim2
! bn_frld = 'amm12_bdyT_ice', 24 , 'ileadfra', .true. , .false. , 'daily' , '' , '' , ''
! bn_hicif = 'amm12_bdyT_ice', 24 , 'iicethic', .true. , .false. , 'daily' , '' , '' , ''
@@ -590,7 +588,7 @@
! bn_ht_i = 'amm12_bdyT_ice', 24 , 'iicethic', .true. , .false. , 'daily' , '' , '' , ''
! bn_ht_s = 'amm12_bdyT_ice', 24 , 'isnowthi', .true. , .false. , 'daily' , '' , '' , ''
- cn_dir = 'OBC/' ! root directory for the location of the bulk files
+ cn_dir = 'bdydta/' ! root directory for the location of the bulk files
ln_full_vel = .false. !
/
!-----------------------------------------------------------------------
@@ -698,7 +696,7 @@
ln_mus_ups = .false. ! use upstream scheme near river mouths
ln_traadv_ubs = .false. ! UBS scheme
nn_ubs_v = 2 ! =2 , vertical 2nd order FCT / COMPACT 4th order
- ln_traadv_qck = .true. ! QUICKEST scheme
+ ln_traadv_qck = .false. ! QUICKEST scheme
/
!-----------------------------------------------------------------------
&namtra_adv_mle ! mixed layer eddy parametrisation (Fox-Kemper param) (default: NO)
@@ -763,7 +761,7 @@
!-----------------------------------------------------------------------
&namtra_dmp ! tracer: T & S newtonian damping (default: NO)
!-----------------------------------------------------------------------
- ln_tradmp = .false. ! add a damping termn (T) or not (F)
+ ln_tradmp = .true. ! add a damping termn (T) or not (F)
nn_zdmp = 0 ! vertical shape =0 damping throughout the water column
! =1 no damping in the mixing layer (kz criteria)
! =2 no damping in the mixed layer (rho crieria)
--
GitLab
From 08427789568cbfb244aaf81d463b498dabbb3c61 Mon Sep 17 00:00:00 2001
From: jpolton <jpolton@gmail.com>
Date: Mon, 20 May 2019 09:39:11 +0100
Subject: [PATCH 09/18] Update README.md
---
README.md | 2 ++
1 file changed, 2 insertions(+)
diff --git a/README.md b/README.md
index c38be18..9c0b13e 100644
--- a/README.md
+++ b/README.md
@@ -1,6 +1,8 @@
# NEMO_cfgs
NEMO BoBEAS configuration
+** IN ORDER TO FINISH THE DELIVERABLES I AM RESTRUCTING THIS REPO. SO THIS IS W.I.P**
+
Each configuration directory should be laid out in the following manner, to
facilitate configuration archival and sharing:
--
GitLab
From a2ababff7e92b0ea051be3a0454937d1f4681f25 Mon Sep 17 00:00:00 2001
From: Dr Jeff Polton <jpolton@gmail.com>
Date: Tue, 21 May 2019 15:21:49 +0100
Subject: [PATCH 10/18] try non penetrative convection for IC stability
---
EXP_Apr19/namelist_cfg | 18 +++++++++---------
1 file changed, 9 insertions(+), 9 deletions(-)
diff --git a/EXP_Apr19/namelist_cfg b/EXP_Apr19/namelist_cfg
index c4dd9da..3f2a604 100644
--- a/EXP_Apr19/namelist_cfg
+++ b/EXP_Apr19/namelist_cfg
@@ -42,7 +42,7 @@
cn_ocerst_out = "restart" ! suffix of ocean restart name (output)
cn_ocerst_outdir= "./restarts" ! directory in which to write output ocean restarts
ln_iscpl = .false. ! cavity evolution forcing or coupling to ice sheet model
- nn_istate = 0 ! output the initial state (1) or not (0)
+ nn_istate = 1 ! output the initial state (1) or not (0)
ln_rst_list = .false. ! output restarts at list of times using nn_stocklist (T) or at set frequency with nn_stock (F)
nn_stock = 10 !43200 ! 14400 ! frequency of creation of a restart file (modulo referenced to 1)
nn_stocklist = 0,0,0,0,0,0,0,0,0,0 ! List of timesteps when a restart file is to be written
@@ -129,10 +129,10 @@
!-----------------------------------------------------------------------
! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
- sn_tem = 'initcd_votemper', -1 ,'votemper' , .false. , .true. , 'yearly' , '' , '' , ''
- sn_sal = 'initcd_vosaline', -1 ,'vosaline' , .false. , .true. , 'yearly' , '' , '' , ''
- !sn_dep = 'initcd_depth.nc' , -12 ,'gdept_4D', .false. , .true. , 'yearly' , '' , '' , ''
- !sn_msk = 'initcd_mask.nc', -12 ,'mask', .false. , .true. , 'yearly' , '' , '' , ''
+ sn_tem = 'initcd_votemper', -12 ,'votemper' , .false. , .true. , 'yearly' , '' , '' , ''
+ sn_sal = 'initcd_vosaline', -12 ,'vosaline' , .false. , .true. , 'yearly' , '' , '' , ''
+ sn_dep = 'initcd_depth.nc' , -12 ,'gdept_4D', .false. , .true. , 'yearly' , '' , '' , ''
+ sn_msk = 'initcd_mask.nc', -12 ,'mask', .false. , .true. , 'yearly' , '' , '' , ''
!
cn_dir = './ICS/' ! root directory for the location of the runoff files
ln_tsd_init = .true. ! Initialisation of ocean T & S with T &S input data (T) or not (F)
@@ -606,7 +606,7 @@ ln_rnf_depth_ini = .true. ! compute depth at initialisation from runoff file
ln_dyn3d_dmp =.false. ! open boundary condition for baroclinic velocities
rn_time_dmp = 1. ! Damping time scale in days
rn_time_dmp_out = 1. ! Outflow damping time scale
- nn_rimwidth = 9 ! width of the relaxation zone
+ nn_rimwidth = 1 ! width of the relaxation zone
ln_vol = .false. ! total volume correction (see nn_volctl parameter)
nn_volctl = 1 ! = 0, the total water flux across open boundaries is zero
nb_jpk_bdy = 75 ! number of levels in the bdy data (set < 0 if consistent with planned run)
@@ -710,8 +710,8 @@ ln_rnf_depth_ini = .true. ! compute depth at initialisation from runoff file
!-----------------------------------------------------------------------
&nameos ! ocean physical parameters
!-----------------------------------------------------------------------
- ln_teos10 = .false. ! = Use TEOS-10 equation of state
- ln_eos80 = .true. ! = Use EOS80 equation of state
+ ln_teos10 = .true. ! = Use TEOS-10 equation of state
+ ln_eos80 = .false. ! = Use EOS80 equation of state
ln_seos = .false. ! = Use simplified equation of state (S-EOS)
!
! ! S-EOS coefficients (ln_seos=T):
@@ -933,7 +933,7 @@ ln_rnf_depth_ini = .true. ! compute depth at initialisation from runoff file
ln_zdfevd = .true. ! enhanced vertical diffusion (evd) (T) or not (F)
nn_evdm = 0 ! evd apply on tracer (=0) or on tracer and momentum (=1)
rn_avevd = 100. ! evd mixing coefficient [m2/s]
- ln_zdfnpc = .false. ! Non-Penetrative Convective algorithm (T) or not (F)
+ ln_zdfnpc = .true. ! Non-Penetrative Convective algorithm (T) or not (F)
nn_npc = 1 ! frequency of application of npc
nn_npcp = 365 ! npc control print frequency
ln_zdfexp = .false. ! time-stepping: split-explicit (T) or implicit (F) time stepping
--
GitLab
From 7c824b4165f409d1e3ae23f8535e9f959bd90548 Mon Sep 17 00:00:00 2001
From: Dr Jeff Polton <jpolton@gmail.com>
Date: Tue, 21 May 2019 18:54:59 +0100
Subject: [PATCH 11/18] switch off conflicting zdf enhanced mixing
---
EXP_Apr19/namelist_cfg | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/EXP_Apr19/namelist_cfg b/EXP_Apr19/namelist_cfg
index 3f2a604..2f7fb25 100644
--- a/EXP_Apr19/namelist_cfg
+++ b/EXP_Apr19/namelist_cfg
@@ -930,7 +930,7 @@ ln_rnf_depth_ini = .true. ! compute depth at initialisation from runoff file
rn_avt0 = 1.2e-5 ! vertical eddy diffusivity [m2/s] (background Kz if not "key_zdfcst")
nn_avb = 0 ! profile for background avt & avm (=1) or not (=0)
nn_havtb = 0 ! horizontal shape for avtb (=1) or not (=0)
- ln_zdfevd = .true. ! enhanced vertical diffusion (evd) (T) or not (F)
+ ln_zdfevd = .false. ! enhanced vertical diffusion (evd) (T) or not (F)
nn_evdm = 0 ! evd apply on tracer (=0) or on tracer and momentum (=1)
rn_avevd = 100. ! evd mixing coefficient [m2/s]
ln_zdfnpc = .true. ! Non-Penetrative Convective algorithm (T) or not (F)
--
GitLab
From bac128c52e2306ac6d45f7dfe8546fb3254ddbbd Mon Sep 17 00:00:00 2001
From: Dr Jeff Polton <jpolton@gmail.com>
Date: Tue, 21 May 2019 18:58:14 +0100
Subject: [PATCH 12/18] Add better (slower) error reporting
---
MY_SRC/stpctl.F90 | 189 ++++++++++++++++++
.../f_files/stpctl.F90 | 189 ++++++++++++++++++
2 files changed, 378 insertions(+)
create mode 100644 MY_SRC/stpctl.F90
create mode 100644 NAMELISTS_AND_FORTRAN_FILES/f_files/stpctl.F90
diff --git a/MY_SRC/stpctl.F90 b/MY_SRC/stpctl.F90
new file mode 100644
index 0000000..ededc36
--- /dev/null
+++ b/MY_SRC/stpctl.F90
@@ -0,0 +1,189 @@
+MODULE stpctl
+ !!======================================================================
+ !! *** MODULE stpctl ***
+ !! Ocean run control : gross check of the ocean time stepping
+ !!======================================================================
+ !! History : OPA ! 1991-03 (G. Madec) Original code
+ !! 6.0 ! 1992-06 (M. Imbard)
+ !! 8.0 ! 1997-06 (A.M. Treguier)
+ !! NEMO 1.0 ! 2002-06 (G. Madec) F90: Free form and module
+ !! 2.0 ! 2009-07 (G. Madec) Add statistic for time-spliting
+ !!----------------------------------------------------------------------
+
+ !!----------------------------------------------------------------------
+ !! stp_ctl : Control the run
+ !!----------------------------------------------------------------------
+ USE oce ! ocean dynamics and tracers variables
+ USE dom_oce ! ocean space and time domain variables
+ USE c1d ! 1D vertical configuration
+ !
+ USE in_out_manager ! I/O manager
+ USE lbclnk ! ocean lateral boundary conditions (or mpp link)
+ USE lib_mpp ! distributed memory computing
+ USE lib_fortran ! Fortran routines library
+
+ IMPLICIT NONE
+ PRIVATE
+
+ PUBLIC stp_ctl ! routine called by step.F90
+ !!----------------------------------------------------------------------
+ !! NEMO/OPA 3.3 , NEMO Consortium (2010)
+ !! $Id: stpctl.F90 7852 2017-03-30 14:04:54Z cetlod $
+ !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
+ !!----------------------------------------------------------------------
+CONTAINS
+
+ SUBROUTINE stp_ctl( kt, kindic )
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE stp_ctl ***
+ !!
+ !! ** Purpose : Control the run
+ !!
+ !! ** Method : - Save the time step in numstp
+ !! - Print it each 50 time steps
+ !! - Stop the run IF problem ( indic < 0 )
+ !!
+ !! ** Actions : 'time.step' file containing the last ocean time-step
+ !!
+ !!----------------------------------------------------------------------
+ INTEGER, INTENT(in ) :: kt ! ocean time-step index
+ INTEGER, INTENT(inout) :: kindic ! error indicator
+ !!
+ INTEGER :: ji, jj, jk ! dummy loop indices
+ INTEGER :: ii, ij, ik ! local integers
+ REAL(wp) :: velmax2, zsmin, zssh2, zsshmax ! local scalars
+ INTEGER, DIMENSION(3) :: ilocu !
+ INTEGER, DIMENSION(2) :: ilocs !
+ !!----------------------------------------------------------------------
+ !
+ IF( kt == nit000 .AND. lwp ) THEN
+ WRITE(numout,*)
+ WRITE(numout,*) 'stp_ctl : time-stepping control'
+ WRITE(numout,*) '~~~~~~~'
+ ! open time.step file
+ CALL ctl_opn( numstp, 'time.step', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, numout, lwp, narea )
+ ENDIF
+ !
+ IF(lwp) WRITE ( numstp, '(1x, i8)' ) kt !* save the current time step in numstp
+ IF(lwp) REWIND( numstp ) ! --------------------------
+ !
+ ! !* Test maximum of velocity
+ ! ! ------------------------
+ !! velmax2 = MAXVAL( ABS( un(:,:,:) ) ) ! slower than the following loop on NEC SX5
+ velmax2 = 0.e0
+ DO jk = 1, jpk
+ DO jj = 1, jpj
+ DO ji = 1, jpi
+ velmax2 = MAX( velmax2,un(ji,jj,jk)**2 + vn(ji,jj,jk)**2 )
+ END DO
+ END DO
+ END DO
+ IF( lk_mpp ) CALL mpp_max( velmax2 ) ! max over the global domain
+ !
+ IF( MOD( kt, nwrite ) == 1 .AND. lwp ) WRITE(numout,*) ' ==>> time-step= ',kt,' 3d speed2 max: ', velmax2
+ !
+ IF( velmax2 > 20.e0**2 ) THEN
+ IF( lk_mpp ) THEN
+ CALL mpp_maxloc( un(:,:,:)**2+vn(:,:,:)**2,umask,velmax2,ii,ij,ik)
+ ELSE
+ ilocu = MAXLOC( un(:,:,:)**2 + vn(:,:,:)**2 )
+ ii = ilocu(1) + nimpp - 1
+ ij = ilocu(2) + njmpp - 1
+ ik = ilocu(3)
+ ENDIF
+ IF(lwp) THEN
+ WRITE(numout,cform_err)
+ WRITE(numout,*) ' stpctl: the speed is larger than 20 m/s'
+ WRITE(numout,*) ' ====== '
+ WRITE(numout,9400) kt, velmax2, ii, ij, ik
+ WRITE(numout,*)
+ WRITE(numout,*) ' output of last fields in numwso'
+ ENDIF
+ kindic = -3
+ ENDIF
+9400 FORMAT (' kt=',i6,' max abs(vel)**2: ',1pg11.4,', i j k: ',3i5)
+ !
+ ! !* Test minimum of salinity
+ ! ! ------------------------
+ !! zsmin = MINVAL( tsn(:,:,1,jp_sal), mask = tmask(:,:,1) == 1.e0 ) slower than the following loop on NEC SX5
+ zsmin = 100._wp
+ DO jj = 2, jpjm1
+ DO ji = 1, jpi
+ IF( tmask(ji,jj,1) == 1) zsmin = MIN(zsmin,tsn(ji,jj,1,jp_sal))
+ END DO
+ END DO
+ IF( lk_mpp ) CALL mpp_min( zsmin ) ! min over the global domain
+ !
+ IF( MOD( kt, nwrite ) == 1 .AND. lwp ) WRITE(numout,*) ' ==>> time-step= ',kt,' SSS min:', zsmin
+ !
+ IF( zsmin < 0.) THEN
+ IF (lk_mpp) THEN
+ CALL mpp_minloc ( tsn(:,:,1,jp_sal),tmask(:,:,1), zsmin, ii,ij )
+ ELSE
+ ilocs = MINLOC( tsn(:,:,1,jp_sal), mask = tmask(:,:,1) == 1.e0 )
+ ii = ilocs(1) + nimpp - 1
+ ij = ilocs(2) + njmpp - 1
+ ENDIF
+ !
+ IF(lwp) THEN
+ WRITE(numout,cform_err)
+ WRITE(numout,*) 'stp_ctl : NEGATIVE sea surface salinity'
+ WRITE(numout,*) '======= '
+ WRITE(numout,9500) kt, zsmin, ii, ij
+ WRITE(numout,*)
+ WRITE(numout,*) ' output of last fields in numwso'
+ ENDIF
+ kindic = -3
+ ENDIF
+9500 FORMAT (' kt=',i6,' min SSS: ',1pg11.4,', i j: ',2i5)
+ !
+ !
+ IF( lk_c1d ) RETURN ! No log file in case of 1D vertical configuration
+
+ ! log file (ssh statistics)
+ ! -------- !* ssh statistics (and others...)
+ IF( kt == nit000 .AND. lwp ) THEN ! open ssh statistics file (put in solver.stat file)
+ CALL ctl_opn( numsol, 'solver.stat', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, numout, lwp, narea )
+ ENDIF
+ !
+ zsshmax = 0.e0
+ DO jj = 1, jpj
+ DO ji = 1, jpi
+ IF( tmask(ji,jj,1) == 1) zsshmax = MAX( zsshmax, ABS(sshn(ji,jj)) )
+ END DO
+ END DO
+ IF( lk_mpp ) CALL mpp_max( zsshmax ) ! min over the global domain
+ !
+ IF( MOD( kt, nwrite ) == 1 .AND. lwp ) WRITE(numout,*) ' ==>> time-step= ',kt,' ssh max:', zsshmax
+ !
+ IF( zsshmax > 10.e0 ) THEN
+ IF (lk_mpp) THEN
+ CALL mpp_maxloc( ABS(sshn(:,:)),tmask(:,:,1),zsshmax,ii,ij)
+ ELSE
+ ilocs = MAXLOC( ABS(sshn(:,:)) )
+ ii = ilocs(1) + nimpp - 1
+ ij = ilocs(2) + njmpp - 1
+ ENDIF
+ !
+ IF(lwp) THEN
+ WRITE(numout,cform_err)
+ WRITE(numout,*) 'stp_ctl : the ssh is larger than 10m'
+ WRITE(numout,*) '======= '
+ WRITE(numout,9600) kt, zsshmax, ii, ij
+ WRITE(numout,*)
+ WRITE(numout,*) ' output of last fields in numwso'
+ ENDIF
+ kindic = -3
+ ENDIF
+9600 FORMAT (' kt=',i6,' max ssh: ',1pg11.4,', i j: ',2i5)
+ !
+ zssh2 = glob_sum( sshn(:,:) * sshn(:,:) )
+ !
+ IF(lwp) WRITE(numsol,9700) kt, zssh2, velmax2, zsmin ! ssh statistics
+ !
+9700 FORMAT(' it :', i8, ' ssh2: ', d23.16, ' vel2max: ',d23.16,' SSSmin: ',d23.16)
+ !
+ END SUBROUTINE stp_ctl
+
+ !!======================================================================
+END MODULE stpctl
diff --git a/NAMELISTS_AND_FORTRAN_FILES/f_files/stpctl.F90 b/NAMELISTS_AND_FORTRAN_FILES/f_files/stpctl.F90
new file mode 100644
index 0000000..ededc36
--- /dev/null
+++ b/NAMELISTS_AND_FORTRAN_FILES/f_files/stpctl.F90
@@ -0,0 +1,189 @@
+MODULE stpctl
+ !!======================================================================
+ !! *** MODULE stpctl ***
+ !! Ocean run control : gross check of the ocean time stepping
+ !!======================================================================
+ !! History : OPA ! 1991-03 (G. Madec) Original code
+ !! 6.0 ! 1992-06 (M. Imbard)
+ !! 8.0 ! 1997-06 (A.M. Treguier)
+ !! NEMO 1.0 ! 2002-06 (G. Madec) F90: Free form and module
+ !! 2.0 ! 2009-07 (G. Madec) Add statistic for time-spliting
+ !!----------------------------------------------------------------------
+
+ !!----------------------------------------------------------------------
+ !! stp_ctl : Control the run
+ !!----------------------------------------------------------------------
+ USE oce ! ocean dynamics and tracers variables
+ USE dom_oce ! ocean space and time domain variables
+ USE c1d ! 1D vertical configuration
+ !
+ USE in_out_manager ! I/O manager
+ USE lbclnk ! ocean lateral boundary conditions (or mpp link)
+ USE lib_mpp ! distributed memory computing
+ USE lib_fortran ! Fortran routines library
+
+ IMPLICIT NONE
+ PRIVATE
+
+ PUBLIC stp_ctl ! routine called by step.F90
+ !!----------------------------------------------------------------------
+ !! NEMO/OPA 3.3 , NEMO Consortium (2010)
+ !! $Id: stpctl.F90 7852 2017-03-30 14:04:54Z cetlod $
+ !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
+ !!----------------------------------------------------------------------
+CONTAINS
+
+ SUBROUTINE stp_ctl( kt, kindic )
+ !!----------------------------------------------------------------------
+ !! *** ROUTINE stp_ctl ***
+ !!
+ !! ** Purpose : Control the run
+ !!
+ !! ** Method : - Save the time step in numstp
+ !! - Print it each 50 time steps
+ !! - Stop the run IF problem ( indic < 0 )
+ !!
+ !! ** Actions : 'time.step' file containing the last ocean time-step
+ !!
+ !!----------------------------------------------------------------------
+ INTEGER, INTENT(in ) :: kt ! ocean time-step index
+ INTEGER, INTENT(inout) :: kindic ! error indicator
+ !!
+ INTEGER :: ji, jj, jk ! dummy loop indices
+ INTEGER :: ii, ij, ik ! local integers
+ REAL(wp) :: velmax2, zsmin, zssh2, zsshmax ! local scalars
+ INTEGER, DIMENSION(3) :: ilocu !
+ INTEGER, DIMENSION(2) :: ilocs !
+ !!----------------------------------------------------------------------
+ !
+ IF( kt == nit000 .AND. lwp ) THEN
+ WRITE(numout,*)
+ WRITE(numout,*) 'stp_ctl : time-stepping control'
+ WRITE(numout,*) '~~~~~~~'
+ ! open time.step file
+ CALL ctl_opn( numstp, 'time.step', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, numout, lwp, narea )
+ ENDIF
+ !
+ IF(lwp) WRITE ( numstp, '(1x, i8)' ) kt !* save the current time step in numstp
+ IF(lwp) REWIND( numstp ) ! --------------------------
+ !
+ ! !* Test maximum of velocity
+ ! ! ------------------------
+ !! velmax2 = MAXVAL( ABS( un(:,:,:) ) ) ! slower than the following loop on NEC SX5
+ velmax2 = 0.e0
+ DO jk = 1, jpk
+ DO jj = 1, jpj
+ DO ji = 1, jpi
+ velmax2 = MAX( velmax2,un(ji,jj,jk)**2 + vn(ji,jj,jk)**2 )
+ END DO
+ END DO
+ END DO
+ IF( lk_mpp ) CALL mpp_max( velmax2 ) ! max over the global domain
+ !
+ IF( MOD( kt, nwrite ) == 1 .AND. lwp ) WRITE(numout,*) ' ==>> time-step= ',kt,' 3d speed2 max: ', velmax2
+ !
+ IF( velmax2 > 20.e0**2 ) THEN
+ IF( lk_mpp ) THEN
+ CALL mpp_maxloc( un(:,:,:)**2+vn(:,:,:)**2,umask,velmax2,ii,ij,ik)
+ ELSE
+ ilocu = MAXLOC( un(:,:,:)**2 + vn(:,:,:)**2 )
+ ii = ilocu(1) + nimpp - 1
+ ij = ilocu(2) + njmpp - 1
+ ik = ilocu(3)
+ ENDIF
+ IF(lwp) THEN
+ WRITE(numout,cform_err)
+ WRITE(numout,*) ' stpctl: the speed is larger than 20 m/s'
+ WRITE(numout,*) ' ====== '
+ WRITE(numout,9400) kt, velmax2, ii, ij, ik
+ WRITE(numout,*)
+ WRITE(numout,*) ' output of last fields in numwso'
+ ENDIF
+ kindic = -3
+ ENDIF
+9400 FORMAT (' kt=',i6,' max abs(vel)**2: ',1pg11.4,', i j k: ',3i5)
+ !
+ ! !* Test minimum of salinity
+ ! ! ------------------------
+ !! zsmin = MINVAL( tsn(:,:,1,jp_sal), mask = tmask(:,:,1) == 1.e0 ) slower than the following loop on NEC SX5
+ zsmin = 100._wp
+ DO jj = 2, jpjm1
+ DO ji = 1, jpi
+ IF( tmask(ji,jj,1) == 1) zsmin = MIN(zsmin,tsn(ji,jj,1,jp_sal))
+ END DO
+ END DO
+ IF( lk_mpp ) CALL mpp_min( zsmin ) ! min over the global domain
+ !
+ IF( MOD( kt, nwrite ) == 1 .AND. lwp ) WRITE(numout,*) ' ==>> time-step= ',kt,' SSS min:', zsmin
+ !
+ IF( zsmin < 0.) THEN
+ IF (lk_mpp) THEN
+ CALL mpp_minloc ( tsn(:,:,1,jp_sal),tmask(:,:,1), zsmin, ii,ij )
+ ELSE
+ ilocs = MINLOC( tsn(:,:,1,jp_sal), mask = tmask(:,:,1) == 1.e0 )
+ ii = ilocs(1) + nimpp - 1
+ ij = ilocs(2) + njmpp - 1
+ ENDIF
+ !
+ IF(lwp) THEN
+ WRITE(numout,cform_err)
+ WRITE(numout,*) 'stp_ctl : NEGATIVE sea surface salinity'
+ WRITE(numout,*) '======= '
+ WRITE(numout,9500) kt, zsmin, ii, ij
+ WRITE(numout,*)
+ WRITE(numout,*) ' output of last fields in numwso'
+ ENDIF
+ kindic = -3
+ ENDIF
+9500 FORMAT (' kt=',i6,' min SSS: ',1pg11.4,', i j: ',2i5)
+ !
+ !
+ IF( lk_c1d ) RETURN ! No log file in case of 1D vertical configuration
+
+ ! log file (ssh statistics)
+ ! -------- !* ssh statistics (and others...)
+ IF( kt == nit000 .AND. lwp ) THEN ! open ssh statistics file (put in solver.stat file)
+ CALL ctl_opn( numsol, 'solver.stat', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, numout, lwp, narea )
+ ENDIF
+ !
+ zsshmax = 0.e0
+ DO jj = 1, jpj
+ DO ji = 1, jpi
+ IF( tmask(ji,jj,1) == 1) zsshmax = MAX( zsshmax, ABS(sshn(ji,jj)) )
+ END DO
+ END DO
+ IF( lk_mpp ) CALL mpp_max( zsshmax ) ! min over the global domain
+ !
+ IF( MOD( kt, nwrite ) == 1 .AND. lwp ) WRITE(numout,*) ' ==>> time-step= ',kt,' ssh max:', zsshmax
+ !
+ IF( zsshmax > 10.e0 ) THEN
+ IF (lk_mpp) THEN
+ CALL mpp_maxloc( ABS(sshn(:,:)),tmask(:,:,1),zsshmax,ii,ij)
+ ELSE
+ ilocs = MAXLOC( ABS(sshn(:,:)) )
+ ii = ilocs(1) + nimpp - 1
+ ij = ilocs(2) + njmpp - 1
+ ENDIF
+ !
+ IF(lwp) THEN
+ WRITE(numout,cform_err)
+ WRITE(numout,*) 'stp_ctl : the ssh is larger than 10m'
+ WRITE(numout,*) '======= '
+ WRITE(numout,9600) kt, zsshmax, ii, ij
+ WRITE(numout,*)
+ WRITE(numout,*) ' output of last fields in numwso'
+ ENDIF
+ kindic = -3
+ ENDIF
+9600 FORMAT (' kt=',i6,' max ssh: ',1pg11.4,', i j: ',2i5)
+ !
+ zssh2 = glob_sum( sshn(:,:) * sshn(:,:) )
+ !
+ IF(lwp) WRITE(numsol,9700) kt, zssh2, velmax2, zsmin ! ssh statistics
+ !
+9700 FORMAT(' it :', i8, ' ssh2: ', d23.16, ' vel2max: ',d23.16,' SSSmin: ',d23.16)
+ !
+ END SUBROUTINE stp_ctl
+
+ !!======================================================================
+END MODULE stpctl
--
GitLab
From cf25d2c0f9c3daf7c71b3ece1996792b05050f1e Mon Sep 17 00:00:00 2001
From: Dr Jeff Polton <jpolton@gmail.com>
Date: Tue, 21 May 2019 20:17:32 +0100
Subject: [PATCH 13/18] attempt restart from hydrostatic ocean
---
EXP_Apr19/namelist_cfg | 16 ++++++++--------
1 file changed, 8 insertions(+), 8 deletions(-)
diff --git a/EXP_Apr19/namelist_cfg b/EXP_Apr19/namelist_cfg
index 2f7fb25..67b108a 100644
--- a/EXP_Apr19/namelist_cfg
+++ b/EXP_Apr19/namelist_cfg
@@ -26,27 +26,27 @@
&namrun ! parameters of the run
!-----------------------------------------------------------------------
cn_exp = "BoBEAS" ! experience name
- nn_it000 = 1 ! first time step
- nn_itend = 100 ! 10800! 259200!133920! 10800!43200 ! 10day=14400 ! last time step (std 5475)
+ nn_it000 = 101 ! first time step
+ nn_itend = 1440 ! 10800! 259200!133920! 10800!43200 ! 10day=14400 ! last time step (std 5475)
nn_date0 = 20190401 ! date at nit_0000 (format yyyymmdd) used if ln_rstart=F or (ln_rstart=T and nn_rstctl=0 or 1)
nn_time0 = 0 ! initial time of day in hhmm
nn_leapy = 1 ! Leap year calendar (1) or not (0)
- ln_rstart = .false. ! start from rest (F) or from a restart file (T)
+ ln_rstart = .true. ! start from rest (F) or from a restart file (T)
nn_euler = 1 ! = 0 : start with forward time step if ln_rstart=T
nn_rstctl = 2 ! restart control ==> activated only if ln_rstart=T
! ! = 0 nn_date0 read in namelist ; nn_it000 : read in namelist
! ! = 1 nn_date0 read in namelist ; nn_it000 : check consistancy between namelist and restart
! ! = 2 nn_date0 read in restart ; nn_it000 : check consistancy between namelist and restart
- cn_ocerst_in = "__RESFILE__" ! suffix of ocean restart name (input)
+ cn_ocerst_in = "BoBEAS_00000100_restart" ! suffix of ocean restart name (input)
cn_ocerst_indir = "./restarts" ! directory from which to read input ocean restarts
cn_ocerst_out = "restart" ! suffix of ocean restart name (output)
cn_ocerst_outdir= "./restarts" ! directory in which to write output ocean restarts
ln_iscpl = .false. ! cavity evolution forcing or coupling to ice sheet model
nn_istate = 1 ! output the initial state (1) or not (0)
ln_rst_list = .false. ! output restarts at list of times using nn_stocklist (T) or at set frequency with nn_stock (F)
- nn_stock = 10 !43200 ! 14400 ! frequency of creation of a restart file (modulo referenced to 1)
+ nn_stock = 144 !43200 ! 14400 ! frequency of creation of a restart file (modulo referenced to 1)
nn_stocklist = 0,0,0,0,0,0,0,0,0,0 ! List of timesteps when a restart file is to be written
- nn_write = 10 ! 14400 ! frequency of write in the output file (modulo referenced to nn_it000)
+ nn_write = 144 ! 14400 ! frequency of write in the output file (modulo referenced to nn_it000)
ln_mskland = .false. ! mask land points in NetCDF outputs (costly: + ~15%)
ln_cfmeta = .false. ! output additional data to netCDF files required for compliance with the CF metadata standard
ln_clobber = .true. ! clobber (overwrite) an existing file
@@ -930,10 +930,10 @@ ln_rnf_depth_ini = .true. ! compute depth at initialisation from runoff file
rn_avt0 = 1.2e-5 ! vertical eddy diffusivity [m2/s] (background Kz if not "key_zdfcst")
nn_avb = 0 ! profile for background avt & avm (=1) or not (=0)
nn_havtb = 0 ! horizontal shape for avtb (=1) or not (=0)
- ln_zdfevd = .false. ! enhanced vertical diffusion (evd) (T) or not (F)
+ ln_zdfevd = .true. ! enhanced vertical diffusion (evd) (T) or not (F)
nn_evdm = 0 ! evd apply on tracer (=0) or on tracer and momentum (=1)
rn_avevd = 100. ! evd mixing coefficient [m2/s]
- ln_zdfnpc = .true. ! Non-Penetrative Convective algorithm (T) or not (F)
+ ln_zdfnpc = .false. ! Non-Penetrative Convective algorithm (T) or not (F)
nn_npc = 1 ! frequency of application of npc
nn_npcp = 365 ! npc control print frequency
ln_zdfexp = .false. ! time-stepping: split-explicit (T) or implicit (F) time stepping
--
GitLab
From 0cb2bd5711286a8815613616c63f052e95edfba0 Mon Sep 17 00:00:00 2001
From: Dr Jeff Polton <jpolton@gmail.com>
Date: Tue, 21 May 2019 20:47:01 +0100
Subject: [PATCH 14/18] istate=0
---
EXP_Apr19/namelist_cfg | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/EXP_Apr19/namelist_cfg b/EXP_Apr19/namelist_cfg
index 67b108a..2763c04 100644
--- a/EXP_Apr19/namelist_cfg
+++ b/EXP_Apr19/namelist_cfg
@@ -42,7 +42,7 @@
cn_ocerst_out = "restart" ! suffix of ocean restart name (output)
cn_ocerst_outdir= "./restarts" ! directory in which to write output ocean restarts
ln_iscpl = .false. ! cavity evolution forcing or coupling to ice sheet model
- nn_istate = 1 ! output the initial state (1) or not (0)
+ nn_istate = 0 ! output the initial state (1) or not (0)
ln_rst_list = .false. ! output restarts at list of times using nn_stocklist (T) or at set frequency with nn_stock (F)
nn_stock = 144 !43200 ! 14400 ! frequency of creation of a restart file (modulo referenced to 1)
nn_stocklist = 0,0,0,0,0,0,0,0,0,0 ! List of timesteps when a restart file is to be written
--
GitLab
From a78669271eb730eb651b64c84c845cb3388ea872 Mon Sep 17 00:00:00 2001
From: Dr Jeff Polton <jpolton@gmail.com>
Date: Wed, 22 May 2019 11:52:43 +0100
Subject: [PATCH 15/18] switch to non-penetrative convection: zdfnpc=T
---
EXP_Apr19/namelist_cfg | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/EXP_Apr19/namelist_cfg b/EXP_Apr19/namelist_cfg
index 2763c04..efb0336 100644
--- a/EXP_Apr19/namelist_cfg
+++ b/EXP_Apr19/namelist_cfg
@@ -930,10 +930,10 @@ ln_rnf_depth_ini = .true. ! compute depth at initialisation from runoff file
rn_avt0 = 1.2e-5 ! vertical eddy diffusivity [m2/s] (background Kz if not "key_zdfcst")
nn_avb = 0 ! profile for background avt & avm (=1) or not (=0)
nn_havtb = 0 ! horizontal shape for avtb (=1) or not (=0)
- ln_zdfevd = .true. ! enhanced vertical diffusion (evd) (T) or not (F)
+ ln_zdfevd = .false. ! enhanced vertical diffusion (evd) (T) or not (F)
nn_evdm = 0 ! evd apply on tracer (=0) or on tracer and momentum (=1)
rn_avevd = 100. ! evd mixing coefficient [m2/s]
- ln_zdfnpc = .false. ! Non-Penetrative Convective algorithm (T) or not (F)
+ ln_zdfnpc = .true. ! Non-Penetrative Convective algorithm (T) or not (F)
nn_npc = 1 ! frequency of application of npc
nn_npcp = 365 ! npc control print frequency
ln_zdfexp = .false. ! time-stepping: split-explicit (T) or implicit (F) time stepping
--
GitLab
From cea77c6767e0078927236985861b9615df689f9f Mon Sep 17 00:00:00 2001
From: Dr Jeff Polton <jpolton@gmail.com>
Date: Wed, 22 May 2019 12:19:44 +0100
Subject: [PATCH 16/18] try openbcs
---
EXP_Apr19/namelist_cfg | 24 ++++++++++++------------
1 file changed, 12 insertions(+), 12 deletions(-)
diff --git a/EXP_Apr19/namelist_cfg b/EXP_Apr19/namelist_cfg
index efb0336..2e19b48 100644
--- a/EXP_Apr19/namelist_cfg
+++ b/EXP_Apr19/namelist_cfg
@@ -585,15 +585,15 @@ ln_rnf_depth_ini = .true. ! compute depth at initialisation from runoff file
ln_mask_file = .false. ! =T : read mask from file
cn_mask_file = 'bdy_mask.nc' ! name of mask file (if ln_mask_file=.TRUE.)
cn_dyn2d = 'flather' !
- nn_dyn2d_dta = 2 ! = 0, bdy data are equal to the initial state
+ nn_dyn2d_dta = 3 ! = 0, bdy data are equal to the initial state
! = 1, bdy data are read in 'bdydata .nc' files
! = 2, use tidal harmonic forcing data from files
! = 3, use external data AND tidal harmonic forcing
cn_dyn3d = 'specified' !
- nn_dyn3d_dta = 0 ! = 0, bdy data are equal to the initial state
+ nn_dyn3d_dta = 1 ! = 0, bdy data are equal to the initial state
! = 1, bdy data are read in 'bdydata .nc' files
cn_tra = 'frs' !
- nn_tra_dta = 0 ! = 0, bdy data are equal to the initial state
+ nn_tra_dta = 1 ! = 0, bdy data are equal to the initial state
! = 1, bdy data are read in 'bdydata .nc' files
cn_ice_lim = 'none' !
nn_ice_lim_dta = 0 ! = 0, bdy data are equal to the initial state
@@ -606,7 +606,7 @@ ln_rnf_depth_ini = .true. ! compute depth at initialisation from runoff file
ln_dyn3d_dmp =.false. ! open boundary condition for baroclinic velocities
rn_time_dmp = 1. ! Damping time scale in days
rn_time_dmp_out = 1. ! Outflow damping time scale
- nn_rimwidth = 1 ! width of the relaxation zone
+ nn_rimwidth = 9 ! width of the relaxation zone
ln_vol = .false. ! total volume correction (see nn_volctl parameter)
nn_volctl = 1 ! = 0, the total water flux across open boundaries is zero
nb_jpk_bdy = 75 ! number of levels in the bdy data (set < 0 if consistent with planned run)
@@ -616,13 +616,13 @@ ln_rnf_depth_ini = .true. ! compute depth at initialisation from runoff file
!-----------------------------------------------------------------------
! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
! ! ! (if <0 months) ! name ! (logical) ! (T/F ) ! 'monthly' ! filename ! pairing ! filename !
- bn_ssh = 'GCOMS1k_LME_12_BLZE_bt_bdyT',24 , 'sossheig', .true. , .false. , 'monthly' , '' , '' , ''
- bn_u2d = 'GCOMS1k_LME_12_BLZE_bdyU', 24 , 'vobtcrtx', .true. , .false. , 'monthly' , '' , '' , ''
- bn_v2d = 'GCOMS1k_LME_12_BLZE_bdyV', 24 , 'vobtcrty', .true. , .false. , 'monthly' , '' , '' , ''
- bn_u3d = 'GCOMS1k_LME_12_BLZE_bdyU' 24 , 'vozocrtx', .true. , .false. , 'monthly' , '' , '' , ''
- bn_v3d = 'GCOMS1k_LME_12_BLZE_bdyV' 24 , 'vomecrty', .true. , .false. , 'monthly' , '' , '' , ''
- bn_tem = 'GCOMS1k_LME_12_BLZE_bdyT' 24 , 'votemper', .true. , .false. , 'monthly' , '' , '' , ''
- bn_sal = 'GCOMS1k_LME_12_BLZE_bdyT' 24 , 'vosaline', .true. , .false. , 'monthly' , '' , '' , ''
+ bn_ssh = 'BoBEAS_bt_bdyT',24 , 'sossheig', .true. , .false. , 'monthly' , '' , '' , ''
+ bn_u2d = 'BoBEAS_bdyU', 24 , 'vobtcrtx', .true. , .false. , 'monthly' , '' , '' , ''
+ bn_v2d = 'BoBEAS_bdyV', 24 , 'vobtcrty', .true. , .false. , 'monthly' , '' , '' , ''
+ bn_u3d = 'BoBEAS_bdyU' 24 , 'vozocrtx', .true. , .false. , 'monthly' , '' , '' , ''
+ bn_v3d = 'BoBEAS_bdyV' 24 , 'vomecrty', .true. , .false. , 'monthly' , '' , '' , ''
+ bn_tem = 'BoBEAS_bdyT' 24 , 'votemper', .true. , .false. , 'monthly' , '' , '' , ''
+ bn_sal = 'BoBEAS_bdyT' 24 , 'vosaline', .true. , .false. , 'monthly' , '' , '' , ''
! for lim2
! bn_frld = 'amm12_bdyT_ice', 24 , 'ileadfra', .true. , .false. , 'daily' , '' , '' , ''
! bn_hicif = 'amm12_bdyT_ice', 24 , 'iicethic', .true. , .false. , 'daily' , '' , '' , ''
@@ -632,7 +632,7 @@ ln_rnf_depth_ini = .true. ! compute depth at initialisation from runoff file
! bn_ht_i = 'amm12_bdyT_ice', 24 , 'iicethic', .true. , .false. , 'daily' , '' , '' , ''
! bn_ht_s = 'amm12_bdyT_ice', 24 , 'isnowthi', .true. , .false. , 'daily' , '' , '' , ''
- cn_dir = 'bdydta/' ! root directory for the location of the bulk files
+ cn_dir = 'OBC/' ! root directory for the location of the bulk files
ln_full_vel = .true. !
/
!-----------------------------------------------------------------------
--
GitLab
From b62cfbc4e5c1c7a5901e2e80a57826d8977d6a60 Mon Sep 17 00:00:00 2001
From: jpolton <jpolton@gmail.com>
Date: Wed, 22 May 2019 13:02:26 +0100
Subject: [PATCH 17/18] Update README.md
---
README.md | 75 +------------------------------------------------------
1 file changed, 1 insertion(+), 74 deletions(-)
diff --git a/README.md b/README.md
index 9c0b13e..fc6fefa 100644
--- a/README.md
+++ b/README.md
@@ -8,80 +8,7 @@ facilitate configuration archival and sharing:
<pre>
BoBEAS
-|____NAMELISTS_AND_FORTRAN_FILES
-| |___INITIAL_CONDITION
-| | |____initcd_vosaline.namelist
-| | |____initcd_votemper.namelist
-| | |____namelist_reshape_bilin_initcd_vosaline
-| | |____namelist_reshape_bilin_initcd_votemper
-| | |____sosie.x
-| |
-| |___RUN_DIRECTORY
-| | |____namelist_cfg
-| | |____namelist_ref
-| |
-| |___TIDES
-| | |____inputs_dst.ncml
-| | |____inputs_src.ncml
-| | |____namelist.bdy
-| | |____run_script.pbs
-| |
-| |___f_files
-| | |____bdyini.F90
-| | |____diaharm.F90
-| | |____diaharm_fast.F90
-| | |____dommsk.F90
-| | |____dtatsd.F90
-| | |____par_oce.F90
-| | |____sbctide.F90
-| | |____step.F90
-| | |____step_oce.F90
-| | |____tide_FES14.h90
-| | |____tide_mod.F90
-| | |____tideini.F90
-| |
-| |___p_files
-| | |____scrip.patch
-| | |____scripgrid.patch
-| | |____scripinterp.patch
-| | |____scripinterp_mod.patch
-| | |____scripshape.patch
-|
-|____SCRIPTS
-| |____load_modules_1.sh
-| |____make_tools.sh
-| |____create_coordinates.sh
-| |____load_modules_2.sh
-| |____main1.sh
-| |____fix_elevation.sh
-| |____make_directories.sh
-| |____python_script.sh
-| |____python_tide.sh
-| |____scri.sh
-| |____setup_python_obc.sh
-| |____setup_python_tide.sh
-| |____interpolate_gebco.sh
-| |____make_domain_cfg.sh
-| |____make_nemo.sh
-| |____make_paths.sh
-| |____make_tides.sh
-| |____make_xios.sh
-| |____bdy_obc.m
-| |____COPERNICUS_INTERP_SSH.m
-| |____nemo_IC_temperature.m
-| |____nemo_IC_salinity.m
-| |____COPERNICUS_INTERP.m
-| |____obc_Sal.m
-| |____obc_U.m
-| |____obc_V.m
-| |____obc_Temp.m
-| |____obc_SSH.m
-| |____river_maker.m
-| |____Coast_finder.m
-| |____smooth2.m
-| |____bathymetry_fill.m
-| |____Generate_NEMO_Forcing.py
-| |____python_mask.py
|
+|____stuff
|____README.md
</pre>
--
GitLab
From 61486f7469de2c0eda3d369467991090cc5195ff Mon Sep 17 00:00:00 2001
From: jpolton <jpolton@gmail.com>
Date: Wed, 22 May 2019 13:03:39 +0100
Subject: [PATCH 18/18] Update README.md
---
README.md | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/README.md b/README.md
index fc6fefa..185373a 100644
--- a/README.md
+++ b/README.md
@@ -2,6 +2,7 @@
NEMO BoBEAS configuration
** IN ORDER TO FINISH THE DELIVERABLES I AM RESTRUCTING THIS REPO. SO THIS IS W.I.P**
+** BRANCH:ashbre contains the original structure **
Each configuration directory should be laid out in the following manner, to
facilitate configuration archival and sharing:
@@ -9,6 +10,7 @@ facilitate configuration archival and sharing:
<pre>
BoBEAS
|
-|____stuff
|____README.md
+|
+|____stuff
</pre>
--
GitLab