diff --git a/README.rst b/README.rst index a13b846334d9573518daa3f496a0875f4dc5c83e..c50565aab66bf4c1e79b64f4389a4502e4f1a477 100644 --- a/README.rst +++ b/README.rst @@ -12,6 +12,11 @@ How do I get set up? Steps to take to install PyNEMO, creating a specific conda virtual environment is highly recommended. `click here for more about virtual enviroments <https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html/>`_ +- Install Git (outside scope of this readme) +- Clone PyNEMO repository:: + + $ git clone https://github.com/NOC-MSM/PyNEMO.git + - Install Conda, either Anaconda or Miniconda (outside scope of this readme) - Create conda environment for PyNEMO:: @@ -26,10 +31,6 @@ Steps to take to install PyNEMO, creating a specific conda virtual environment i $ export LD_LIBRARY_PATH=/path/to/java/library/folder/containing/libjvm.dylib:$LD_LIBARY_PATH # see notes below -- Install Git (outside scope of this readme):: - - $ git clone https://github.com/NOC-MSM/PyNEMO.git - - Install PyNEMO:: $ cd /location/of/pynemo/repo @@ -58,7 +59,7 @@ To use PyNEMO, the following command is entered: (the example will run an benchm **Additional NOTES** -for MacOs and Java SDK 13 and JRE 8 the following path should be correct:: +For macOS Mojave and Java SDK 13 and JRE 8 the following path for the libjvm library should be correct:: /Library/Java/JavaVirtualMachines/jdk-13.0.1.jdk/Contents/Home/lib/server