From 4eb98b6f7f654afd12b12748542d61e76d667b02 Mon Sep 17 00:00:00 2001 From: thopri <41162894+thopri@users.noreply.github.com> Date: Mon, 28 Oct 2019 15:00:58 +0000 Subject: [PATCH] Updated order of recipe --- README.rst | 11 ++++++----- 1 file changed, 6 insertions(+), 5 deletions(-) diff --git a/README.rst b/README.rst index a13b846..c50565a 100644 --- a/README.rst +++ b/README.rst @@ -12,6 +12,11 @@ How do I get set up? Steps to take to install PyNEMO, creating a specific conda virtual environment is highly recommended. `click here for more about virtual enviroments <https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html/>`_ +- Install Git (outside scope of this readme) +- Clone PyNEMO repository:: + + $ git clone https://github.com/NOC-MSM/PyNEMO.git + - Install Conda, either Anaconda or Miniconda (outside scope of this readme) - Create conda environment for PyNEMO:: @@ -26,10 +31,6 @@ Steps to take to install PyNEMO, creating a specific conda virtual environment i $ export LD_LIBRARY_PATH=/path/to/java/library/folder/containing/libjvm.dylib:$LD_LIBARY_PATH # see notes below -- Install Git (outside scope of this readme):: - - $ git clone https://github.com/NOC-MSM/PyNEMO.git - - Install PyNEMO:: $ cd /location/of/pynemo/repo @@ -58,7 +59,7 @@ To use PyNEMO, the following command is entered: (the example will run an benchm **Additional NOTES** -for MacOs and Java SDK 13 and JRE 8 the following path should be correct:: +For macOS Mojave and Java SDK 13 and JRE 8 the following path for the libjvm library should be correct:: /Library/Java/JavaVirtualMachines/jdk-13.0.1.jdk/Contents/Home/lib/server -- GitLab