API-Reference.md

@@ -13,7 +13,7 @@ Script | Description
 [`split_by_type.R`](https://git.noc.ac.uk/brecinosrivas/icoads-r-hostace/-/blob/master/rscripts/split_by_type.R) | Separates records according to the different platform types. This is done following a [selection criteria](Workflow/data-selection).  
 [`simple_dup.R`](https://git.noc.ac.uk/brecinosrivas/icoads-r-hostace/-/blob/master/rscripts/simple_dup.R)   | Duplicate record identification among ship data and the rest of the different platform types for which the records show a matching `date` , `time` and position `(lat, lon)`.
 [`ship2plat.R`](https://git.noc.ac.uk/brecinosrivas/icoads-r-hostace/-/blob/master/rscripts/ship2plat.R)   | Excludes non-ship data. Uses additional information from WMO Publication 47 to flag non-ship data. [Kent. *et al.,* (2007)](https://doi.org/10.1175/JTECH1949.1)
-[`process_ids.R`](https://git.noc.ac.uk/brecinosrivas/icoads-r-hostace/-/blob/master/rscripts/process_ids.R)   |  Reformat of ship `id`'s coming from different data sources (`sid`) to enable linking of data from the same ship (same ship name) across different `dck`'s. And to also enable linking to metadata information in WMO Publication No. 47.
+[`process_ids.R`](https://git.noc.ac.uk/brecinosrivas/icoads-r-hostace/-/blob/master/rscripts/process_ids.R)   |  Reformat of ship `id`'s coming from different data sources (`sid`) to enable linking of data from the same ship (same ship name) across different `dck`'s. And to also enable linking to metadata information in WMO Publication No. 47. More information in [Processing of `id`'s](Workflow/processing-of-ids).
 [`process_shipdata.R`](https://git.noc.ac.uk/brecinosrivas/icoads-r-hostace/-/blob/master/rscripts/process_shipdata.R)   | Corrects dates and times errors noticed in some `dck`. Largely arise from confusion over historical definitions of the marine day and conversions between local time and UTC.
 [`new_get_pairs.R`](https://git.noc.ac.uk/brecinosrivas/icoads-r-hostace/-/blob/master/rscripts/new_get_pairs.R)   | Duplicate record identification within the ship data. Pairs the reports as duplicate if they have associated ship `id`'s. The candidate pairs are then selected according to i) the number of matching elements (similar content of variables within a specific tolerance), ii) the `dck`'s, and iii) a comparison of the `id`'s.
 [`new_get_dups.R`](https://git.noc.ac.uk/brecinosrivas/icoads-r-hostace/-/blob/master/rscripts/new_get_dups.R)   | Counts the number of duplicated records and flags the best according to a [quality control criteria](Workflow/quality-control). Groups duplicated records by common `callsings`. 
@@ -48,7 +48,7 @@ Function | Description
 [`id_group_func.R`](https://git.noc.ac.uk/brecinosrivas/icoads-r-hostace/-/blob/master/rutils/id_group_func.R)   | Makes sure that all `id`'s grouped in [`get_groups.R`](https://git.noc.ac.uk/brecinosrivas/icoads-r-hostace/-/blob/master/rutils/get_groups.R) are properly associated.
 [`liz_merge.R`](https://git.noc.ac.uk/brecinosrivas/icoads-r-hostace/-/blob/master/rutils/liz_merge.R)   | Merges two data frames by specific columns. 
 [`new_add_match_id.R`](https://git.noc.ac.uk/brecinosrivas/icoads-r-hostace/-/blob/master/rutils/new_add_match_id.R)   |  Tests whether paired `id`'s  are allow to match according a [matching criteria](Workflow/matching-criteria) and by using the [Damerau–Levenshtein (DL) distance](https://en.wikipedia.org/wiki/Damerau%E2%80%93Levenshtein_distance) formula.
-[`new_homog_ids.R`](https://git.noc.ac.uk/brecinosrivas/icoads-r-hostace/-/blob/master/rutils/new_homog_ids.R)   | Uses standard linkages between `id`'s to add `id` [homogenisation](Workflow/processing-of-ids) information to each records.
+[`new_homog_ids.R`](https://git.noc.ac.uk/brecinosrivas/icoads-r-hostace/-/blob/master/rutils/new_homog_ids.R)   | Uses standard linkages between `id`'s to add `id` [homogenisation](https://git.noc.ac.uk/brecinosrivas/icoads-r-hostace/-/wikis/Workflow/processing-of-ids#homogenisation) information to each records.
 [`print_id_match_info.R`](https://git.noc.ac.uk/brecinosrivas/icoads-r-hostace/-/blob/master/rutils/print_id_match_info.R)   | Prints ICOADS duplicates information and `id` matching results.
 [`read_rdsfiles.R`](https://git.noc.ac.uk/brecinosrivas/icoads-r-hostace/-/blob/master/rutils/read_rdsfiles.R)   | A collection of functions to read all different types of data files (e.g rds, .txt) used through out the code. 
 [`write_dup_func.R`](https://git.noc.ac.uk/brecinosrivas/icoads-r-hostace/-/blob/master/rutils/write_dup_func.R)  | Writes duplicate information in a pipe-delimited year-month output format. The report `uid` is followed by the report `id` then a flag with value 1 if the `id` has been changed, 0 if it remains the same. <br> An example of the format is: <br> ICOADS-30-0Y0HJK &#124; 32024 &#124; 0 <br> ICOADS-30-0Y0HJL &#124; 14 00117 &#124; 1