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The scripts in this repository consist on a pure [R](https://www.r-project.org/) package,
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The scripts in this repository consist on a pure [R](https://www.r-project.org/) package,
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but it has several dependencies which can be install by the following
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but it has several dependencies which can be installed by the following
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instructions.
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instructions.
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All the required packages should work on any platform and on linux based systems.
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All the required packages should work on any platform and on linux based systems.
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... | @@ -48,7 +48,7 @@ for more information. |
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**Conda environment**
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**Conda environment**
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Once conda is installed on your system you can easily create a fix R environment
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Once conda is installed on your system you can easily create a fixed R environment
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to use in every run by:
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to use in every run by:
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~~~
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~~~
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| ... | @@ -81,12 +81,12 @@ conda install -c conda-forge r-devtools |
... | @@ -81,12 +81,12 @@ conda install -c conda-forge r-devtools |
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**IMMA toolbox**
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**IMMA toolbox**
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The IMMA data format is used for the disemmination of the icoads marine data.
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The IMMA data format is used for the disemmination of the ICOADS marine data.
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The package **imma** written also in R.
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The package **imma** written also in R.
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Provides function to read those files and to apply quality control to the data.
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Provides function to read those files and to apply quality control to the data.
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Must be install manually by getting the .tar.gz file and running the following
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Must be installed manually by getting the .tar.gz file and running the following
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script once your conda environment is activated:
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script once your conda environment has been activated:
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~~~
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~~~
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conda install ./imma_0.0.1.tar.gz
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conda install ./imma_0.0.1.tar.gz
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| ... | @@ -102,11 +102,13 @@ system. Then, clone the latest repository version: |
... | @@ -102,11 +102,13 @@ system. Then, clone the latest repository version: |
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git clone git@git.noc.ac.uk:brecinosrivas/icoads-r-hostace.git
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git clone git@git.noc.ac.uk:brecinosrivas/icoads-r-hostace.git
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~~~
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~~~
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If you are in JASMIN, you might have to configure your **Gitlab ssh keys**. Adding
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If you are inside [JASMIN](https://help.jasmin.ac.uk/article/185-generate-ssh-key-pair),
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a JASMIN pub key to your profile. To enable access from JASMIN sci servers to
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you might have to configure your **Gitlab** ssh keys (under **Settings > Ssh keys**).
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your NOC gitlab platform.
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And add a JASMIN pub key to your profile (from within JASMIN's sci servers).
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This in order to enable access from JASMIN sci servers to your NOC gitlab platform and
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to clone the repository within one of JASMIN's sci servers.
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More information [here](https://git.noc.ac.uk/help/ssh/README.md).
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For more information on gitlab ssh keys [click here](https://git.noc.ac.uk/help/ssh/README.md).
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Now you can go to the repository by:
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Now you can go to the repository by:
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