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  • ICOADS R HOSTACE
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  • How to install

How to install · Changes

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fix typos authored May 19, 2020 by bearecinos's avatar bearecinos
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How-to-install.md
View page @ 715fe3c0
The scripts in this repository consist on a pure [R](https://www.r-project.org/) package,
but it has several dependencies which can be install by the following
but it has several dependencies which can be installed by the following
instructions.
All the required packages should work on any platform and on linux based systems.
......@@ -48,7 +48,7 @@ for more information.
**Conda environment**
Once conda is installed on your system you can easily create a fix R environment
Once conda is installed on your system you can easily create a fixed R environment
to use in every run by:
~~~
......@@ -81,12 +81,12 @@ conda install -c conda-forge r-devtools
**IMMA toolbox**
The IMMA data format is used for the disemmination of the icoads marine data.
The IMMA data format is used for the disemmination of the ICOADS marine data.
The package **imma** written also in R.
Provides function to read those files and to apply quality control to the data.
Must be install manually by getting the .tar.gz file and running the following
script once your conda environment is activated:
Must be installed manually by getting the .tar.gz file and running the following
script once your conda environment has been activated:
~~~
conda install ./imma_0.0.1.tar.gz
......@@ -102,11 +102,13 @@ system. Then, clone the latest repository version:
git clone git@git.noc.ac.uk:brecinosrivas/icoads-r-hostace.git
~~~
If you are in JASMIN, you might have to configure your **Gitlab ssh keys**. Adding
a JASMIN pub key to your profile. To enable access from JASMIN sci servers to
your NOC gitlab platform.
If you are inside [JASMIN](https://help.jasmin.ac.uk/article/185-generate-ssh-key-pair),
you might have to configure your **Gitlab** ssh keys (under **Settings > Ssh keys**).
And add a JASMIN pub key to your profile (from within JASMIN's sci servers).
This in order to enable access from JASMIN sci servers to your NOC gitlab platform and
to clone the repository within one of JASMIN's sci servers.
More information [here](https://git.noc.ac.uk/help/ssh/README.md).
For more information on gitlab ssh keys [click here](https://git.noc.ac.uk/help/ssh/README.md).
Now you can go to the repository by:
......
Clone repository
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