Skip to content

GitLab

  • Projects
  • Groups
  • Snippets
  • Help
    • Loading...
  • Help
    • Help
    • Support
    • Community forum
    • Submit feedback
    • Contribute to GitLab
  • Sign in
I ICOADS R HOSTACE
  • Project overview
    • Project overview
    • Details
    • Activity
    • Releases
  • Repository
    • Repository
    • Files
    • Commits
    • Branches
    • Tags
    • Contributors
    • Graph
    • Compare
  • Issues 7
    • Issues 7
    • List
    • Boards
    • Labels
    • Service Desk
    • Milestones
  • Merge requests 0
    • Merge requests 0
  • CI/CD
    • CI/CD
    • Pipelines
    • Jobs
    • Schedules
  • Operations
    • Operations
    • Incidents
    • Environments
  • Analytics
    • Analytics
    • CI/CD
    • Repository
    • Value Stream
  • Wiki
    • Wiki
  • Snippets
    • Snippets
  • Members
    • Members
  • Activity
  • Graph
  • Create a new issue
  • Jobs
  • Commits
  • Issue Boards
Collapse sidebar
  • brivas
  • ICOADS R HOSTACE
  • Wiki
  • How to install

How to install · Changes

Page history
update docs for library used authored Jul 06, 2020 by bearecinos's avatar bearecinos
Show whitespace changes
Inline Side-by-side
Showing with 19 additions and 3 deletions
+19 -3
  • How-to-install.md How-to-install.md +19 -3
  • No files found.
How-to-install.md
View page @ cc8bc9ca
......@@ -25,8 +25,8 @@ with the most recent version of the following packages:
- igraph
**External R software**
- imma
requires
- [imma](https://git.noc.ac.uk/ricorne/imma)
- [icoads.utils](https://git.noc.ac.uk/brecinosrivas/icoads.utils)
- maptools
- reticulate
- chron
......@@ -92,7 +92,7 @@ conda install -c conda-forge r-"package name"
----------------------------------
The IMMA data format is used for the disemmination of the ICOADS marine data.
The R-package **imma** provides function to apply quality control to the ICOADS data.
The R-package [imma](https://git.noc.ac.uk/ricorne/imma) provides function to apply quality control to the ICOADS data.
Must be installed manually by getting the .tar.gz file from the [package repository](https://git.noc.ac.uk/ricorne/imma)
and running the following script once your conda environment has been activated:
......@@ -107,6 +107,22 @@ if the above doesn't work try:
R CMD INSTALL imma-master.tar.gz
~~~
**ICOADS-utils toolbox**
----------------------------------
The [icoads.utils](https://git.noc.ac.uk/brecinosrivas/icoads.utils) package is a collection of utility functions to assist with the homogenization of platform identifier information and the identification of duplicated records in the processing tasks carried out by the scripts in `rscripts`.
Must be installed manually by getting the .tar.gz file from the [package repository](https://git.noc.ac.uk/brecinosrivas/icoads.utils) and running the following script once your conda environment has been activated:
~~~
conda install ./icoads.utils-master.tar.gz
~~~
if the above doesn't work try:
~~~
R CMD INSTALL icoads.utils-master.tar.gz
~~~
**Install the repository itself**
----------------------------------
......
Clone repository

Wiki pages

Home

Introduction
Installation
JASMIN tips

Workflow
- Data selection
- Processing of ID's
- Matching criteria
- Quality control
- Duplicate identification

API Reference

Releases

Examples