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JASMIN tips · Changes

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Update JASMIN tips authored Jun 03, 2020 by Dave Berry's avatar Dave Berry
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JASMIN-tips.md
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This page is meant to supplement the [How-to-install](https://git.noc.ac.uk/brecinosrivas/icoads-r-hostace/-/wikis/How-to-install) page.
**Activating conda R environment**
---
On some Linux systems Conda does not run or activate environments properly, this is due to environment paths not being properly set. The following has been found to work on JASMIN
......@@ -12,10 +13,8 @@ conda activate <your_env>
where *\<your_env\>* is the name of the environment you wish to activate.
**Installing R packages not on Conda forge or available through the *conda install* command**
**Installing R packages not on conda-forge or available through the *conda install* command**
---
Many, but not all, R packages can be installed via conda forge, e.g.
```
......@@ -38,8 +37,8 @@ R CMD INSTALL ggplot2_3.3.1.tar.gz
When installing a package via this method it is likely that the first attempt will fail due to missing dependencies. If this happens install those dependencies and then try again.
**Running new_merge_ids_year.R interactively**
---
The script *new_merge_ids_year.R* is typically run in batch mode, e.g.
......
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