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JASMIN tips · Changes

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added how to update icoads.utils authored Aug 21, 2020 by bearecinos's avatar bearecinos
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JASMIN-tips.md
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......@@ -81,4 +81,34 @@ It is also possible to gather job statistics for specific job id's:
```
sacct -j <JOB_ID> --format=User,JobID,Jobname,partition,state,time,start,end,elapsed,MaxRss,MaxVMSize,nnodes,ncpus,nodelist >> path_to_log_output/job_stats.out
```
\ No newline at end of file
```
**Update icoads.utils or imma in conda environment**
---
```
conda activate r_env
```
Open R. Inside make sure you know where your libraries are getting install:
```
.libPaths()
[1] "/home/users/brecinos/miniconda3/envs/r_env/lib/R/library"
```
Great! Now we now know where to go.
```
cd /home/users/brecinos/miniconda3/envs/r_env/lib/R/library/
ls
```
You should see **icoads.utils** there. Now delete it!
```
rm -r icoads.utils
```
And is gone from your environment. Install again by following the installation
instructions [here.](https://git.noc.ac.uk/brecinosrivas/icoads-r-hostace/-/wikis/how-to-install#icoads-utils-toolbox)
**Remember to activate the environment before installing**.
> Note: Maybe Dave will know a more elegant way.
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