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JASMIN tips · Changes

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update docs for library used authored Jul 06, 2020 by bearecinos's avatar bearecinos
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JASMIN-tips.md
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......@@ -63,4 +63,22 @@ Long jobs on JASMIN, and other Linux systems, can be run in the background using
nohup Rscript myscript.R arg1 arg2 >& myscript_log.txt &
```
It should then be safe to log out and return later to check the status of the job. `tail -f myscript_log.txt` can be used to monitor the log file in real time.
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It should then be safe to log out and return later to check the status of the job. `tail -f myscript_log.txt` can be used to monitor the log file in real time.
**SLURM tips**
---
To gather information of your runs in SLURM you can run the following command to store job statistics in a output file:
```
sacct --starttime <for-the-last-x-hours> -u <username> --format=User,JobID,Jobname,partition,state,time,start,end,elapsed,MaxRss,MaxVMSize,nnodes,ncpus,nodelist >> path_to_log_output/job_stats.out
```
The `starttime` should be in the following format: `2020-07-01T13:00:00`.
It is also possible to gather job statistics for specific job id's:
```
sacct -j <JOB_ID> --format=User,JobID,Jobname,partition,state,time,start,end,elapsed,MaxRss,MaxVMSize,nnodes,ncpus,nodelist >> path_to_log_output/job_stats.out
```
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