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update to api and links to icoads.utils authored by Beatriz Recinos's avatar Beatriz Recinos
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Workflow.md
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......@@ -48,11 +48,11 @@ A1[rscripts]
id2 --> |simple_dup.R|id3[Check for cross-type duplicates between <br> ship data and the different platform types. <br> Considers the records as duplicates if they <br> show matching date, time & position, <br> with DCK and ID specific selection criteria.]
id3 --> |ship2plat.R|id4[Exclude non-ship data identified in <br> cross-type duplicate analysis.]
id4 --> id5[(ICOADS SHIP data)]
id5 --> |process_ids.R|id6[Reformat selected ship IDs to homogenize <br>information between DCKs. Uses IDs <br>from Pub. 47 metadata in ID prioritisation.]
id6 --> |process_shipdata.R|id7[Process ship data: <br> correction of dates & times.]
id7 --> |new_get_pairs.R|id8[Groups ship reports as potential duplicates <br> if the contents match within tolerance]
id8 --> |new_get_dups.R|id9[Assesses the groups of potential duplicates, <br> accepting those where the ID match is appropriate. <br> Reports from DCK that are of lower quality, <br>or that are less complete, or that fail the <br> track check are flagged as the worst.]
id9 --> |new_merge_ids_year.R|id10[Assesses IDs that have been associated <br> in previous processing to decide whether to replace <br> all IDs in the associated group with the preferred ID.]
id5 --> |process_ships.R|id6[Reformat selected ship IDs to homogenize <br> information between DCKs. <br> Uses IDs from Pub. 47 metadata <br> in ID prioritisation. <br> Corrects dates & times.]
id6 --> |get_pairs.R|id7[Groups ship reports as potential duplicates <br> if the contents match within tolerance]
id7 --> |get_dups.R|id8[Assesses the groups of potential duplicates, <br> accepting those where the ID match is appropriate. <br> Reports from DCK that are of lower quality, <br>or that are less complete, or that fail the <br> track check are flagged as the worst.]
id8 --> |merge_ids_year.R|id9[Assesses IDs that have been associated <br> in previous processing to decide whether to replace <br> all IDs in the associated group with the preferred ID.]
id9 --> |nrt_dup.R|id10[Process near-real-time data collected after 2014.]
id10 --> |clean_data.R|id11[Runs track checking on data to produce <br>clean tracks for all IDs.]
id11 --> |clean2track.R|id12[Selects data for ship-tracking software <br>Carella et al. 2017,<br> choosing only data with missing or generic IDs.]
id12 --> id13[(Output data)]
......@@ -69,4 +69,4 @@ class id6,id7,id8,id9,id10,id11,id12 rest
**Output data**
--------------
Maybe here we can add some of the plots that you created as output.
> Pending