Workflow.md

@@ -50,11 +50,11 @@ A1[rscripts]
  id4 --> id5[(ICOADS SHIP data)]
  id5 --> |process_ships.R|id6[Reformat selected ship IDs to homogenize <br> information between DCKs. <br> Uses IDs from Pub. 47 metadata <br> in ID prioritisation. <br> Corrects dates & times.]
  id6 --> |get_pairs.R|id7[Groups  ship reports as potential duplicates <br> if the contents match within tolerance]
- id7 --> |get_dups.R|id8[Assesses the groups of potential duplicates, <br> accepting those where the ID match is appropriate.  <br> Reports from DCK that are of lower quality, <br>or that are less complete, or that fail the <br>  track check are flagged as the worst.]
+ id7 --> |get_dups.R|id8[Assesses the groups of potential duplicates, <br> accepting those where the ID match is appropriate.<br> Reports from DCK that are of lower quality, <br> or that are less complete, or that fail the <br> track check are flagged as the worst.]
  id8 --> |merge_ids_year.R|id9[Assesses IDs that have been associated <br> in previous processing to decide whether to replace <br> all IDs in the associated group with the preferred ID.]
  id9 --> |nrt_dup.R|id10[Process near-real-time data collected after 2014.]
- id10 --> |clean_data.R|id11[Runs track checking on data to produce <br>clean tracks for all IDs.]
- id11 --> |clean2track.R|id12[Selects data for ship-tracking software <br>Carella et al. 2017,<br> choosing only data with missing or generic IDs.]
+ id10 --> |clean_data.R|id11[Runs track checking on data to produce <br> clean tracks for all IDs.]
+ id11 --> |clean2track.R|id12[Selects data for ship-tracking software Carella et al. 2017,<br> choosing only data with missing or generic IDs.]
  id12 --> id13[(Output data)]
 
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