Workflow.md

@@ -44,17 +44,17 @@ More details on the data processing can be found in this [technical report](http
 graph TB
 A1[rscripts]
 
- id1[(ICOADS v3.0)] --> |split_by_type.R|id2[<center> Separate records according <br> to the different platform types. </center>]
- id2 --> |simple_dup.R|id3[<center> Check for cross-type duplicates between <br> ship data and the different platform types. <br> Considers the records as duplicates if they <br> show matching date, time & position, <br> with DCK and ID specific selection criteria. </center>]
- id3 --> |ship2plat.R|id4[<center> Exclude non-ship data identified in <br> cross-type duplicate analysis. </center>]
- id4 --> id5[<center> (ICOADS SHIP data) </center>]
- id5 --> |process_ships.R|id6[<center> Reformat selected ship IDs to homogenize <br> information between DCKs. <br> Uses IDs from Pub. 47 metadata <br> in ID prioritisation. <br> Corrects dates & times. </center>]
- id6 --> |get_pairs.R|id7[<center> Groups  ship reports as potential duplicates <br> if the contents match within tolerance </center>]
- id7 --> |get_dups.R|id8[<center> Assesses the groups of potential duplicates, <br> accepting those where the ID match is appropriate.  <br> Reports from DCK that are of lower quality, <br>or that are less complete, or that fail the <br>  track check are flagged as the worst. </center>]
- id8 --> |merge_ids_year.R|id9[<center> Assesses IDs that have been associated <br> in previous processing to decide whether to replace <br> all IDs in the associated group with the preferred ID. </center>]
- id9 --> |nrt_dup.R|id10[<center> Process near-real-time data collected after 2014. </center>]
- id10 --> |clean_data.R|id11[<center> Runs track checking on data to produce <br>clean tracks for all IDs. </center>]
- id11 --> |clean2track.R|id12[<center> Selects data for ship-tracking software <br>Carella et al. 2017,<br> choosing only data with missing or generic IDs. </center>]
+ id1[(ICOADS v3.0)] --> |split_by_type.R|id2[Separate records according <br> to the different platform types.]
+ id2 --> |simple_dup.R|id3[Check for cross-type duplicates between <br> ship data and the different platform types. <br> Considers the records as duplicates if they <br> show matching date, time & position, <br> with DCK and ID specific selection criteria.]
+ id3 --> |ship2plat.R|id4[Exclude non-ship data identified in <br> cross-type duplicate analysis.]
+ id4 --> id5[(ICOADS SHIP data)]
+ id5 --> |process_ships.R|id6[Reformat selected ship IDs to homogenize <br> information between DCKs. <br> Uses IDs from Pub. 47 metadata <br> in ID prioritisation. <br> Corrects dates & times.]
+ id6 --> |get_pairs.R|id7[Groups  ship reports as potential duplicates <br> if the contents match within tolerance]
+ id7 --> |get_dups.R|id8[Assesses the groups of potential duplicates, <br> accepting those where the ID match is appropriate.  <br> Reports from DCK that are of lower quality, <br>or that are less complete, or that fail the <br>  track check are flagged as the worst.]
+ id8 --> |merge_ids_year.R|id9[Assesses IDs that have been associated <br> in previous processing to decide whether to replace <br> all IDs in the associated group with the preferred ID.]
+ id9 --> |nrt_dup.R|id10[Process near-real-time data collected after 2014.]
+ id10 --> |clean_data.R|id11[Runs track checking on data to produce <br>clean tracks for all IDs.]
+ id11 --> |clean2track.R|id12[Selects data for ship-tracking software <br>Carella et al. 2017,<br> choosing only data with missing or generic IDs.]
  id12 --> id13[(Output data)]
 
 classDef pre-processing fill:#fcc679,stroke:#333,stroke-width:1px,font-size:16px,font-weight:100,text-align:center