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To be added soon. |
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**Data input**
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- ICOADS v3.0. [Freeman. *et al.,* (2017)](https://doi.org/10.1002/joc.4775)
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- Metadata from WMO Publication 47.
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[Kent. *et al.,* (2007)](https://doi.org/10.1175/JTECH1949.1)
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- CLIWOC logbook IDs. (couldn't find the link)
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- Inventory of ship names in the
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[US Maury Collection](https://icoads.noaa.gov/software/transpec/maury/mauri_out)
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- generate_id (by Dave... not so clear the source)
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- Precision criteria:
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An estimate of the precision of each key variable (e.g. sst, lat, lon) per DCK,
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year and or SID. This precision criteria is required to set tolerances when
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allowing a match between reports in the duplicate identification procedure.
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- json files.
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- seq IDS.
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**Processing stages**
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The following diagram is a summary of the data processing workflow follow by
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the shell scripts defined in ```scr```. Each block
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represents a main task done by one script in```rscripts```.
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The corresponding `.R` file name is highlight in grey between each stage.
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Green blocks represent pre-processing tasks done to the ICOADS data base,
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in order to:
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1. Select data taken only by commercial ships, excluding
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specialist ship data sources, such as research vessels
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(For more information see the [selection criteria](data-selection)).
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2. [Preprocessing of IDs](processing-of-ids) to improve duplicate
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identification and linking of IDs between each pair of duplicate reports.
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3. Preformed [quality control](quality-control) on the data to point out the best duplicate.
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```mermaid
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graph TB
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A1[rscripts]
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id1[(ICOADS v3.0)] --> |split_by_type.R|id2[Separate records according <br> to the different platform types.]
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id2 --> |simple_dup.R|id3[First duplicate identification between <br> ship data and the different platform types. <br> Considers the records as duplicates if they <br> show matching date, time & position.]
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id3 --> |ship2plat.R|id4[Exclude non-ship data.]
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id4 --> id5[(ICOADS SHIP data)]
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id5 --> |process_ids.R|id6[Homogenize and re-format <br> ship IDs from different decks. <br> Links metadata from Pub 47 & logbooks <br> to formed a plausible ship track.]
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id6 --> |process_shipdata.R|id7[Process ship data: <br> correction of dates & times.]
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id7 --> |new_get_pairs.R|id8[Second duplicate identification. <br> Pairs the reports as duplicate if <br> they have associated ship IDs. <br> Reports that fail the track check <br> are flagged as the worst.]
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id8 --> |new_get_dups.R|id9[Count the number of duplicates and flag the best.]
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id9 --> |new_merge_ids_year.R|id10[Links of ID's into classes.]
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id10 --> |clean_data.R|id11[Cleans of ship data.]
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id11 --> |clean2track.R|id12[Forms ship tracks for linked IDs.]
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id12 --> id13[(Output data)]
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classDef pre-processing fill:#fcc679,stroke:#333,stroke-width:1px
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classDef scripts fill:#8C929D,stroke:#333,stroke-width:1px
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classDef rest fill:#e8eaf6,stroke:#333,stroke-width:1px
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class id2,id3,id4 pre-processing;
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class A1,id1,id5,id13 scripts;
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class id6,id7,id8,id9,id10,id11,id12 rest
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``` |
