updated paths and config file explanation

config.ini

-# Paths to the data
-repo_path = '/home/users/brecinos/ORCHESTRA/'
+# Paths to the data replace ~ with your user path
+# This path is where your repository has been clone
+repo_path = '~/orchestra-sst/'
 
+# Until the 17/08/2021 the cci data was still there
 satellite_sst = '/neodc/esacci/sst/data/CDR_v2/Analysis/L4/v2.1/'
 
-drifters_sst = '/gws/nopw/j04/glosat/development/data/interim/HOSTACE_PROC/TEST_CONFIG/output_data/MFILES_DRIFT/'
+# Check with Liz for latest version of the data
+drifters_sst = '/gws/nopw/j04/glosat/development/data/interim/HOSTACE_PROC/RUNjan2021/output_data/MFILES_DRIFT/'
 
-plots_path = '/home/users/brecinos/ORCHESTRA/plots/'
+# Output path for visualizations.
+# You must create this directory after you clone the repository
+plots_path = '~/orchestra-sst/plots/'
 
+# Output paths for the re-gridding process
 satellite_sst_1x1 = '/gws/nopw/j04/orchestra_vol2/ESAcci_sst_v2.1_coarse/v2.1_1x1/'
 
 satellite_sst_2x2 = '/gws/nopw/j04/orchestra_vol2/ESAcci_sst_v2.1_coarse/v2.1_2x2/'
@@ -15,7 +21,10 @@ satellite_sst_buoy_1x1 = '/gws/nopw/j04/orchestra_vol2/ESAcci_sst_v2.1_coarse/v2
 
 satellite_sst_buoy_2x2 = '/gws/nopw/j04/orchestra_vol2/ESAcci_sst_v2.1_coarse/v2.1_atbuoy_2x2/'
 
-# Local paths for local scripts
-time_series = '/Users/brivas/ORCHESTRA_sst/input_data/time_series_ESAcci_sst/'
+# Output paths for the local scripts
+# That do not require a job scheduler run
+# Where to store the time series analysis
+time_series = '~/orchestra-sst/input_data/time_series_ESAcci_sst/'
 
-combined_data = '/Users/brivas/ORCHESTRA_sst/input_data/netcdf_ESAcci_sst_resampled'
\ No newline at end of file
+# Store the time series as netcdf
+combined_data = '/orchestra-sst/input_data/netcdf_ESAcci_sst_resampled'
\ No newline at end of file

src/run_gridding.slurm

 #!/bin/bash
-#SBATCH --partition=short-serial
-#SBATCH --array=1-3
+#SBATCH --partition=short-serial-4hr
+#SBATCH --array=1-3001
 #SBATCH --job-name=sst_buoy_regrid
 #SBATCH --output=../slurm_log_output/sst_buoy_regrid_%A_%a.out
 #SBATCH --error=../slurm_log_output/sst_buoy_regrid_%A_%a.err
 #SBATCH --mem=4000
-#SBATCH --time=12:00:00
+#SBATCH --time=1:00:00
 
 source activate ~/miniconda3/envs/sst
 
-start_year=2004
+start_year=1993
 start_month=1
 start_day=1
 
-echo "Analysing data for $SLURM_ARRAY_TASK_ID days"
+echo "Analysing data for this number of days: $SLURM_ARRAY_TASK_ID"
 echo "since $start_year $start_month $start_day minus a day"
 
 python ~/ORCHESTRA/scripts/coarse_cci_sst.py $start_year $start_month $start_day $SLURM_ARRAY_TASK_ID
 
 echo "Done slurm task ID = $SLURM_ARRAY_TASK_ID"
 
+##Uncomment for statistics on the Job
 ##sacct -j $SLURM_JOB_ID --format=User,JobID,Jobname,partition,state,time,start,end,elapsed,MaxRss,MaxVMSize,nnodes,ncpus,nodelist >> ../slurm_log_output/job_stats.out
\ No newline at end of file