dy105 version (original was jr18002), adds uhdas related scripts

uhdas_02

+uhdas_02_sync_postprocessing_from_raw
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uhdas_02_sync_postprocessing_from_raw

+#!/bin/csh -f
+#
+# bak in Amsterdam before start of jc184 uhdas trial
+# 3 July 2019
+#
+# 1) rsync proc directory from the local atsea copy to the editing directory
+#
+# If the script hasn't been run recently, there will 
+# be a lot of files to sync across. The processing on the uhdas
+# server updates plenty of things in routine processing every few minutes.
+# If the script is then immediately run again, there will be a few files
+# that are updated every ping.
+#
+# List of cruise segments to be processed is found in
+# ~/cruise/data/vmadcp/cruise_segments
+
+set ldir = ~/cruise/data/vmadcp
+
+
+foreach i (`cat ~/cruise/data/vmadcp/cruise_segments`)
+echo
+echo
+echo syncing 
+echo ${ldir}/atsea/${i}/proc 
+echo to 
+echo ${ldir}/postprocessing/${i}/proc_editing
+rsync -auv ${ldir}/atsea/${i}/proc/ ${ldir}/postprocessing/${i}/proc_editing/
+echo
+echo
+
+end
+

uhdas_03

+uhdas_03_copy_asclog_for_editing
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uhdas_03_copy_asclog_for_editing

+#!/bin/bash
+#
+# bak in Amsterdam before start of jc184 uhdas trial
+# 3 July 2019
+#
+# This is run as a bash, because we want the quick_adcp.py to run in the
+# python 3 environment
+# 
+# This script merges the edits stored in the proc_archive asclog file with 
+# any stored in the proc_editing file
+#
+# The combined sorted edits are stored in both of asc and asclog in the proc_editing file
+# The editing process takes past input from .asc, and appends new edits to .asclog
+#
+# List of cruise segments to be processed is found in
+# ~/cruise/data/vmadcp/cruise_segments
+#
+
+# make sure the bash environment is set up
+source ~/.bashrc
+
+# no set command in bash
+ldir=~/cruise/data/vmadcp
+
+for segname in `cat ~/cruise/data/vmadcp/cruise_segments`
+do
+
+pushd ${ldir}/postprocessing/${segname}/proc_editing
+
+
+for pingtype in `ls -d *`
+do
+echo ${segname}/${pingtype}
+data=0
+if test -f ${ldir}/postprocessing/${segname}/proc_editing/${pingtype}/adcpdb/*dir.blk
+then
+data=1
+fi
+
+echo data ${data}
+
+if [ ${data} -eq  1 ]
+then
+pushd ${ldir}/postprocessing/${segname}/proc_editing/${pingtype}
+thisdir=`pwd`
+echo working in ${thisdir}
+
+# now fix the asc files
+
+for asctype in abadbin abottom abadprf
+do
+echo ${asctype}
+f1=${ldir}/postprocessing/${segname}/proc_editing/${pingtype}/edit/${asctype}.asclog
+f2=${ldir}/postprocessing/${segname}/proc_archive/${pingtype}/edit/${asctype}.asclog
+f3=${ldir}/postprocessing/${segname}/proc_editing/${pingtype}/edit/${asctype}.asc
+f4=${ldir}/postprocessing/${segname}/proc_editing/${pingtype}/edit/${asctype}.asclog
+cat ${f1} ${f2} | sort -u > ${f3}
+/bin/cp -p ${f3} ${f4}
+done
+
+thisdir=`pwd`
+echo quick_adcp.py in ${thisdir}
+which quick_adcp.py
+quick_adcp.py --steps2rerun apply_edit:navsteps:calib --auto
+
+
+popd
+fi
+done
+popd
+
+
+done

uhdas_04

+uhdas_04_export_nc
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uhdas_04_export_nc

+#!/bin/bash
+#
+# bak in Amsterdam before start of jc184 uhdas trial
+# 3 July 2019
+#
+# This is run as a bash, because we want the adcp_nc.py to run in the
+# python 3 environment
+# 
+# This script remakes the contour/os150nb.nc file after dataviewer editing
+#
+# List of cruise segments to be processed is found in
+# ~/cruise/data/vmadcp/cruise_segments
+#
+
+# make sure the bash environment is set up
+source ~/.bashrc
+
+# no set command in bash
+ldir=~/cruise/data/vmadcp
+
+for segname in `cat ~/cruise/data/vmadcp/cruise_segments`
+do
+
+pushd ${ldir}/postprocessing/${segname}/proc_editing
+
+
+for pingtype in `ls -d *`
+do
+echo ${segname}/${pingtype}
+data=0
+if test -f ${ldir}/postprocessing/${segname}/proc_editing/${pingtype}/adcpdb/*dir.blk
+then
+data=1
+fi
+
+echo data ${data}
+
+if [ ${data} -eq  1 ]
+then
+pushd ${ldir}/postprocessing/${segname}/proc_editing/${pingtype}
+thisdir=`pwd`
+echo working in ${thisdir}
+
+
+thisdir=`pwd`
+echo adcp_nc.py in ${thisdir}
+which adcp_nc.py
+adcp_nc.py adcpdb contour/${pingtype} jc184 ${pingtype}
+
+
+popd
+fi
+done
+popd
+
+
+done

uhdas_05

+uhdas_05_sync_edited_to_archive
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uhdas_05_sync_edited_to_archive

+#!/bin/csh -f
+#
+# bak in Amsterdam before start of jc184 uhdas trial
+# 3 July 2019
+#
+# 1) rsync proc_edited directory back to proc_archive after editing with dataviewer.py -e
+#
+
+# List of cruise segments to be processed is found in
+# ~/cruise/data/vmadcp/cruise_segments
+#
+set ldir = ~/cruise/data/vmadcp
+#
+#
+foreach i (`cat ~/cruise/data/vmadcp/cruise_segments`)
+echo
+echo
+echo syncing 
+echo ${ldir}/postprocessing/${i}/proc_editing
+echo to 
+echo ${ldir}/postprocessing/${i}/proc_archive
+rsync -av ${ldir}/postprocessing/${i}/proc_editing/ ${ldir}/postprocessing/${i}/proc_archive/
+echo
+echo
+#
+end
+#
+
+
+
+
+