dotcshrc and dotlogin to reflect mexec-exec

commands/mstar_dotcshrc

 #
-
+# This script executed at the start of each cshell
+#
 setenv TZ GMT
 umask 022
 set noclobber
@@ -10,29 +11,17 @@ alias mv 'mv -i'
 alias cp 'cp -i'
 alias h history
 
-# The next line should work on all of nosea1, nosea2, rapid.
-# $dhome is the directory that contains directory 'data' for the cruise.
-# The easiest thing is to use a symbolic link frmo 'cruise' to a named cruise directory
-# eg cd /local/users/pstar; ln -s di344 cruise
-# $shome contains software. It may take the same value as $dhome
-set dhome = /local/users/pstar/cruise # BAK 5 Aug 2009 at NOC preparing for di344/345/346 & jr195
-set shome = /local/users/pstar/cruise # BAK 5 Aug 2009 at NOC preparing for di344/345/346 & jr195
-
-set path = (. $dhome/data/exec/jcr $path)
-set path = (. $dhome/data/exec/commands $path)
-set path = (. $dhome/data/exec $path)
-if (-e  $dhome/data/exec/commands/varclean) then
-  set path = ` tcsh -f $dhome/data/exec/commands/varclean "$path"`
-endif
-
+#add to the search path for shell commands
+set shome = /local/users/pstar/programs/mexec-exec
+#set path = (. $shome/jcr $path)
+set path = ($shome/commands $path)
+set path = ($shome/ $path)
+#set path = ($shome/rapid $path)
 
+# Put current directory at the head of the path
+set path = (. $path)
+set dhome = /local/users/pstar/cruise
 if (! $?cdpath )set cdpath
 set cdpath = (. $dhome/data $dhome $cdpath)
-if (-e  $dhome/data/exec/commands/varclean) then
-  set cdpath = ` tcsh -f $dhome/data/exec/commands/varclean "$cdpath"`
-endif
-
-
-alias eta ssh cook3 eta
-alias etanext ssh cook3 etanext
 
+set prompt="$user@`hostname` %/ > "

commands/mstar_dotlogin

 #
-
-set myhost = `hostname`
-
-# bak jc069
-#setenv PRINTER jc069_53
-#setenv PRINTER _192_168_62_53
-#setenv PRINTER cook_lab # lpd://192.168.62.52 hp 2605 color laser jc069 with driver	HP Color LaserJet Series PCL 6 CUPS
-# bak jr281
-# setenv PRINTER hp4550 # color printer in JCR data prep lab
-# setenv PRINTER data_prep_bw # This is set as default on nosea2 on jr281; firefox: http://127.0.0.1:631/printers
-# setenv PRINTER data_prep_colour #  alternative on jr281; 10.104.2.242; HP Color LaserJet Series PCL 6 CUPS; 600 dpi
+# Clean up by DAS September 2018
+# Almsot all in .cshrc not sure need anything here
 #
-setenv TZ GMT
-umask 022
-set noclobber
-limit coredumpsize 0
-alias lr 'ls -lrtd'
-alias rm 'rm -i'
-alias mv 'mv -i'
-alias cp 'cp -i'
-alias h history
-alias eta ssh cook3 eta
-alias etanext ssh cook3 etanext
-
-if ($myhost == 'nosea1') then
-  setup v2007b matlab # current version Aug 2009
-endif
-if ($myhost == 'nosea2') then
-#  setup v2007b matlab # current version Aug 2009
-  setup v2009a matlab # current version Mar 2013
-endif
-if ($myhost == 'rapid') then
-  setup v2007a matlab # current version Aug 2009
-endif
-if ($myhost == 'nomore') then
-  setup v2007b matlab # current version Oct 2009
-endif
-if ($myhost == 'oceanus') then
-  setup v2009a matlab # current version august 2011
-endif
-
-#set phome = /noc/users/pstar
-#set phome = /data32/cruise/pstar
-# The next line should work on all of nosea1, nosea2, rapid.
-# $dhome is the directory that contains directory 'data' for the cruise.
-# The easiest thing is to use a symbolic link frmo 'cruise' to a named cruise directory
-# eg cd /local/users/pstar; ln -s di344 cruise
-# $shome contains software. It may take the same value as $dhome
-set dhome = /local/users/pstar/cruise # BAK 5 Aug 2009 at NOC preparing for di344/345/346 & jr195
-set shome = /local/users/pstar/cruise # BAK 5 Aug 2009 at NOC preparing for di344/345/346 & jr195
-set path = (. $dhome/data/exec/jcr $path)
-set path = (. $dhome/data/exec/commands $path)
-set path = (. $dhome/data/exec $path)
-if (-e  $dhome/data/exec/commands/varclean) then
-  set path = ` tcsh -f $dhome/data/exec/commands/varclean "$path"`
-endif
-set path = (. $shome/sw/ladcp/ix/geomag $path) # path to ix geomag added by bak on jr281 april 2013
-set path = (. $shome/sw/uh_adcp/programs/codas3/bin/lnx64 $path)
-set path = (. $shome/sw/uh_adcp/programs/pycurrents/adcp $path)
-set path = (. $shome/sw/uh_adcp/programs/pycurrents/data/nmea $path)
-set path = (. $shome/sw/python $path)
-if (-e  $dhome/data/exec/commands/varclean) then
-  set path = ` tcsh -f $dhome/data/exec/commands/varclean "$path"`
-endif
-
-if (! $?cdpath )set cdpath
-set cdpath = (. $dhome/data $dhome $cdpath)
-if (-e  $dhome/data/exec/commands/varclean) then
-  set cdpath = ` tcsh -f $dhome/data/exec/commands/varclean "$cdpath"`
-endif
-
-if (! $?PYTHONPATH) setenv PYTHONPATH
-setenv PYTHONPATH $shome/sw/uh_adcp/programs:$PYTHONPATH
-if (-e  $dhome/data/exec/commands/envclean) then
-  setenv PYTHONPATH ` tcsh -f $dhome/data/exec/commands/envclean "$PYTHONPATH"`
-endif
-
-if (! $?MATLABPATH) setenv MATLABPATH
-# Original line by bak to use mexec stuff in /noc/users/pstar
-# setenv MATLABPATH ~pstar/data/exec/matlab_startup:$MATLABPATH
-# Shipboard version has mexec stuff in /data32 so use that instead
-if (-e  $dhome/data/mexec_processing_scripts) then
-  setenv MATLABPATH $dhome/data/mexec_processing_scripts:$MATLABPATH
-endif
-if ( -e  $shome/sw/m_map) then
-  setenv MATLABPATH $shome/sw/m_map:$MATLABPATH
-endif
-if (-e  $dhome/data/exec/commands/envclean) then
-  setenv MATLABPATH ` tcsh -f $dhome/data/exec/commands/envclean "$MATLABPATH"`
-endif
+# This script executed on each login - will be after .cshrc
+# Load modules - these will be put at front of path
+# #module load matlab/2015b
+module load matlab/2011a
+#module load anaconda2

cruisedir_setup_scripts/conf_script_dy111

@@ -47,12 +47,14 @@ cd general_sw
 foreach d1 (`ls $mexecloc/general_sw`)
   ln -s $mexecloc/general_sw/$d1 $d1
 end
+cd ../..
 
 echo "edit linkscripts and possibly other files in mexec-exec"
 echo "edit m_setup.m to change data time origin, cruise name"
 echo "and possibly some paths e.g. versions of external software packages"
 
 #set up rest of data directory structure
+cd data
 mkdir -p mexec_housekeeping/version
 mkdir mexec_housekeeping/history
 mkdir -p collected_files/figures
@@ -86,7 +88,6 @@ mkdir -p vmadcp/spprocessing
 #mkdir scs_mat
 #echo "run sedexec_startall once $shipudr available"
 mkdir -p techsas/netcdf_files_links
-mkdir -p techsas/netcdf_files_copy
 cd techsas
 ln -s /local/users/pstar/mounts/techsas netcdf_files_rawdir_ship
 ln -s netcdf_files_rawdir_ship netcdf_files_rawdir