removed directory function calls from factory.py

pynemo/nemo_bdy_ncpop.py

@@ -18,8 +18,8 @@ def write_data_to_file(filename, variable_name, data):
     ncid = Dataset(filename, 'a', clobber=False, format='NETCDF4')
     count = data.shape
 
-    three_dim_variables = ['votemper', 'vosaline', 'N1p', 'N3n', 'N5s','thetao','so','uo','vo','vobtcrtx','vozocrtx','vobtcrty','vomecrty']
-    two_dim_variables = ['sossheig', 'iicethic', 'ileadfra', 'isnowthi','zos']
+    three_dim_variables = ['votemper', 'vosaline', 'N1p', 'N3n', 'N5s','vobtcrtx','vozocrtx','vobtcrty','vomecrty']
+    two_dim_variables = ['sossheig', 'iicethic', 'ileadfra', 'isnowthi']
 
     if variable_name in three_dim_variables:
         if len(count) == 3:

pynemo/reader/directory.py

 '''
 This is an abstraction for the data repository
 @author: Mr. Srikanth Nagella
+NOTE: this script is no longer used/supported by PyNEMO, reading directories for data files requires an NCML file.
 '''
 from os import listdir
 import numpy as np

pynemo/reader/factory.py

@@ -9,7 +9,7 @@ import os
 #Local Imports
 from pynemo.reader.ncml import Reader as NcMLReader
 from pynemo.reader.ncml import NcMLFile
-from pynemo.reader.directory import Reader as DirectoryReader
+#from pynemo.reader.directory import Reader as DirectoryReader
 import logging
 
 from netCDF4 import Dataset
@@ -20,14 +20,19 @@ def GetReader(uri, t_adjust, reader_type=None):
         if uri.endswith(".ncml"):
             reader_type = "NcML"
         elif os.path.isdir(uri):
-            reader_type = "Directory"
+            # directory reading directly is no longer supported please use NCML file to define directory
+            #reader_type = "Directory"
+            logger.error("Directory Reading is no longer supported without using NCML file to define location")
+            raise Exception("Directory Reading is no longer supported without using NCML file to define location")
         else:
-            print("Error input should be a NcML file or URL or a Local directory")
-            return None
+            logger.error("Error input: should be a NcML file")
+            raise Exception("Error input: should be a NcML file")
     if reader_type == "NcML":
         return NcMLReader(uri,t_adjust)
     else:
-        return DirectoryReader(uri, t_adjust)
+        logger.error("Directory Reading is no longer supported without using NCML file to define location")
+        raise Exception("Directory Reading is no longer supported without using NCML file to define location")
+        #return DirectoryReader(uri, t_adjust)
     
     
 class NetCDFFile(object):