GitLab

Several changes to improve the structure of the code.

Important: uses new libraries for code development!

• devtools: dependency for pryr and config.
• pryr: memory counter.
• config: allows for the code to have a configuration file in the parent directory.

For more information on the new dependencies see the how to install? page in the wiki.

1. Added a configuration file to all scripts: where all the paths to input/output data will reside.
2. Modified all scripts to guide each script into the right path for input/output data.

• Note: this requires that you have an output_data folder in your parent directory to where the data will get save, see configuration file.

3. Modified the call of the rutils functions in all scripts.
4. Added a new bash script in src to gather logging output in a different directory. Similar to the new_run_everything.scr but a bash version of it (used by bea to run things in her laptop). This is not that relevant will be remove later after I finish running things.
5. Added BSUB script in src to explain how I ran the code in JASMIN (this might be different for you @eck and is the part that we need to discuss.)