Changes made during JC192

backup_core_local

@@ -42,7 +42,7 @@ echo -------------        >> $backuplog
 echo Syncing $root_path to $sync_dir >> $backuplog
 echo Start `date`          >> $backuplog
 
-rsync -v -a --delete -b --backup-dir=$back_dir $root_path $sync_dir  
+rsync -v -a --delete --exclude '._*' --exclude '.DS_Store' -b --backup-dir=$back_dir $root_path $sync_dir  
 
 set how_much1 = `du -sm $sync_dir`
 set how_much2 = `du -sm $back_dir`

commands/mstar_dotcshrc

@@ -24,4 +24,4 @@ set dhome = /local/users/pstar/cruise
 if (! $?cdpath )set cdpath
 set cdpath = (. $dhome/data $dhome $cdpath)
 
-set prompt="$user@`hostname` %/ > "
+set prompt="$user@`hostname` %c3 > "

ctd_linkscript

@@ -2,25 +2,24 @@
 #
 #copy the raw and SBE-processed CTD files from the ship machine
 #then make links to the files to be ingested by mexec using the expected name format
-
 cd /local/users/pstar/cruise/data
-
-set cpre = 'CTD_JC191'
-set cruise = jc191
-#set ctdloc = /local/users/pstar/mounts/mnt_cruise_data/Specific_Equipment/CTD/
-set ctdloc = /local/users/pstar/mounts/mnt_cruise_data/Specific_Equipment/CTD/CTD # jc191 CTD appears twice in the directory name
-
+# May need to edit the following lines on a new cruise
+#set cpre = 'CTD_JC192'
+set cpre = 'JC192_CTD'
+set cruise = jc192
+set ctdloc = /local/users/pstar/mounts/mnt_cruise_data/Specific_Equipment/CTD/
+#set ctdloc = /local/users/pstar/mounts/mnt_cruise_data/Specific_Equipment/CTD/CTD # jc191 CTD appears twice in the directory name
 #bak jc191 we don't want all the cnvs with derived quantities, so explicitly pick up the raw and align_ctm
-rsync -av ${ctdloc}/Processed\ Data/${cpre}_???.cnv ctd/ASCII_FILES/
+rsync -av ${ctdloc}/Processed\ data/${cpre}_???.cnv ctd/ASCII_FILES/
 #rsync -av ${ctdloc}/Processed\ Data/${cpre}_???_Align.cnv ctd/ASCII_FILES/
-rsync -av ${ctdloc}/Processed\ Data/${cpre}_???_Align_CTM.cnv ctd/ASCII_FILES/
-rsync -av ${ctdloc}/Raw\ Data/*.bl ctd/ASCII_FILES/
-rsync -av ${ctdloc}/Processed\ Data/${cpre}*.ros ctd/ASCII_FILES/
-rsync -av ${ctdloc}/Raw\ Data/*.hex ctd/RAW_CTD_FILES/
-rsync -av ${ctdloc}/Raw\ Data/*.XMLCON ctd/RAW_CTD_FILES/
-rsync -av ${ctdloc}/Raw\ Data/*.hdr ctd/RAW_CTD_FILES/
-rsync -av ${ctdloc}/Processed\ Data/${cpre}*.btl ctd/ASCII_FILES/
-
+rsync -av ${ctdloc}/Processed\ data/${cpre}_???_Align_CTM.cnv ctd/ASCII_FILES/
+rsync -av ${ctdloc}/Raw\ data/*.bl ctd/ASCII_FILES/
+rsync -av ${ctdloc}/Processed\ data/${cpre}*.ros ctd/ASCII_FILES/
+rsync -av ${ctdloc}/Raw\ data/*.hex ctd/RAW_CTD_FILES/
+rsync -av ${ctdloc}/Raw\ data/*.XMLCON ctd/RAW_CTD_FILES/
+rsync -av ${ctdloc}/Raw\ data/*.hdr ctd/RAW_CTD_FILES/
+rsync -av ${ctdloc}/Processed\ data/${cpre}*.btl ctd/ASCII_FILES/
+rsync -av ${ctdloc}/SBE35\ data/SBE35_???.cap ctd/ASCII_FILES/SBE35
 cd ctd/ASCII_FILES
 
 foreach i (`ls ${cpre}_???_Align_CTM.cnv`)
@@ -53,4 +52,13 @@ foreach i (`ls ${cpre}_???.cnv`)
    endif
 end
 
-cd ../..
+cd SBE35
+foreach i (`ls SBE35_???.cap`)
+   set num = `awk -v nm="$i" 'BEGIN {print substr(nm,index(nm,".cap")-3,3)}'`
+   set linkfile = sbe35_${cruise}_${num}.asc
+  #echo $linkfile
+   if (! -e $linkfile) then
+      echo Making link $linkfile for raw file $i
+     ln -s $i $linkfile
+   endif
+end

keep_akeake_in_sync

@@ -4,7 +4,7 @@
 #
 
 # The directores to sync
-set dir_list = 'jc174 rapid users'
+set dir_list = 'jc192 rapid users'
 set local_path = /local/users/pstar/rpdmoc/
 set remote_fs = 'pstar@akeake:'
 set remote_path = /local/users/pstar/rpdmoc/
@@ -15,7 +15,7 @@ foreach dd ($dir_list)
   echo Going to sync:  $local_path$dd 
   echo to:  $remote_fs$remote_path
   echo Start `date`     
-  rsync -v -a --delete $local_path$dd $remote_fs$remote_path
+  rsync -v -a --exclude '._*' --exclude '.DS_Store' --delete $local_path$dd $remote_fs$remote_path
 end
 
 # Sync all of the  programs directory
@@ -28,5 +28,5 @@ echo ' -------------- '
 echo Going to sync:  $local_path
 echo to:  $remote_fs$remote_path
 echo Start `date`
-rsync -v -a --delete $local_path $remote_fs$remote_path
+rsync -v -a --exclude '._*' --exclude '.DS_Store' --delete $local_path $remote_fs$remote_path
 

rapid_backup

@@ -14,14 +14,14 @@
 # - $cru
 
 # Variables for pathnames
-set cru  = jc174
-set CRU = JC174
+set cru  = jc192
+set CRU = JC192
 set root = /local/users/pstar/
 set rapiddir = 'rapid'   # Could be osnap
 set usersdir = 'users'
 set progdir = 'programs'
 set deskdir = 'Desktop'
-set exec_loc = ${root}cruise/data/exec/rapid/
+set exec_loc = ${root}programs/mexec-exec/
 
 # Which drive are we using and is it there?
 echo ' '

rapid_get_weather

+# Get some weather forecasts
+#!/bin/csh
+#
+# Map choices are
+# - "canaries" - for the easetern boundary
+# - "arc" - from EB1 to WB6
+# - "Florida" - for the western boundary
+# Other options are
+# "azores", "biscay", ....
+set mapc = 'biscay'
+cd /local/users/pstar/Public/jc192_weather
+set now =  `date +%Y`-`date +%m`-`date +%d`-`date +%H`
+echo $now
+mkdir $now
+cd $now
+# Whole North Atlantic Pressure 
+wget https://www.passageweather.com/maps/natlantic/press/pressure.zip
+# Then our chosen area
+wget https://www.passageweather.com/maps/$mapc/wind/wind.zip
+wget https://www.passageweather.com/maps/$mapc/waves/waves.zip
+
+# Now organsie the plots
+mkdir pressure
+unzip pressure.zip
+mv *.png pressure
+mkdir wind
+unzip wind.zip
+mv *.png wind
+mkdir waves
+unzip waves.zip
+mv *.png waves