Unverified Commit 4eb98b6f authored by thopri's avatar thopri Committed by GitHub
Browse files

Updated order of recipe

parent d28c9815
...@@ -12,6 +12,11 @@ How do I get set up? ...@@ -12,6 +12,11 @@ How do I get set up?
Steps to take to install PyNEMO, creating a specific conda virtual environment is highly recommended. Steps to take to install PyNEMO, creating a specific conda virtual environment is highly recommended.
`click here for more about virtual enviroments <https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html/>`_ `click here for more about virtual enviroments <https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html/>`_
- Install Git (outside scope of this readme)
- Clone PyNEMO repository::
$ git clone https://github.com/NOC-MSM/PyNEMO.git
- Install Conda, either Anaconda or Miniconda (outside scope of this readme) - Install Conda, either Anaconda or Miniconda (outside scope of this readme)
- Create conda environment for PyNEMO:: - Create conda environment for PyNEMO::
...@@ -26,10 +31,6 @@ Steps to take to install PyNEMO, creating a specific conda virtual environment i ...@@ -26,10 +31,6 @@ Steps to take to install PyNEMO, creating a specific conda virtual environment i
$ export LD_LIBRARY_PATH=/path/to/java/library/folder/containing/libjvm.dylib:$LD_LIBARY_PATH # see notes below $ export LD_LIBRARY_PATH=/path/to/java/library/folder/containing/libjvm.dylib:$LD_LIBARY_PATH # see notes below
- Install Git (outside scope of this readme)::
$ git clone https://github.com/NOC-MSM/PyNEMO.git
- Install PyNEMO:: - Install PyNEMO::
$ cd /location/of/pynemo/repo $ cd /location/of/pynemo/repo
...@@ -58,7 +59,7 @@ To use PyNEMO, the following command is entered: (the example will run an benchm ...@@ -58,7 +59,7 @@ To use PyNEMO, the following command is entered: (the example will run an benchm
**Additional NOTES** **Additional NOTES**
for MacOs and Java SDK 13 and JRE 8 the following path should be correct:: For macOS Mojave and Java SDK 13 and JRE 8 the following path for the libjvm library should be correct::
/Library/Java/JavaVirtualMachines/jdk-13.0.1.jdk/Contents/Home/lib/server /Library/Java/JavaVirtualMachines/jdk-13.0.1.jdk/Contents/Home/lib/server
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment